Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013726

Physical Location & Seq

Genomic Coordinates Forward (+)

34011632 .. 34017883

Gene Structure 6252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGATGAGGTGTATAATTTTAAGATTCCTTGGGTCCCCTCTTCAGTACATTGACGAGGTTTGGACTGTTAAGCCACTCTTGCCCTCCGATCCTTACCTCAGATCCCAAGCCAAGTTCTGGGCCGACTTTGTGGACAAGAAGATACATGGTTTGGGGAGAAAAACATGGACAACTAAGGGAGACGAACATGAGGTAGCAAAGAAGGAATACATTGACTGCATTAAGTTGCTAGAAGTGGAGCTTGGGGACAAGCCTTCCTTTGGCGGCGAGACCCTCGGATTTGTTTTGCTTCTGCAGTTGTATGACCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

104

Amino Acids

12.05

Weight (kDa)

5.66

Isoelectric Point (pI)

24.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013726)

Species	Orthologous Gene IDs
malus_domestica	MD10G1196500.v1.1
pyrus_communis	pycom04g12760 pycom06g19880
rosa_chinensis	RchiOBHm_Chr5g0046211
rosa_multiflora	Rmu_sc0001334.1_g000023 Rmu_sc0004463.1_g000002 Rmu_sc0006571.1_g000022 Rmu_sc0039330.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052110 Rroxscaffold_1G00064840 Rroxscaffold_4G00311490
rosa_samantha	Rh2DG175500 Rh2DG257800 Rh5AG537600 Rh7AG425600
rosa_wichuraiana	Rw2G013310 Rw5G006300 Rw5G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	117
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	2 cut(s)	83, 96
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	117, 260
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Alw26I	GTCTC	2 cut(s)	174, 263
AlwI	GGATC	2 cut(s)	83, 96
AoxI	GGCC	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	33, 120
AvaII	GGWCC	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	174, 263
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	293
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	33, 120
BmiI	GGNNCC	2 cut(s)	34, 35
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	28, 274
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 260
BseDI	CCNNGG	2 cut(s)	28, 274
BseLI	CCNNNNNNNGG	2 cut(s)	117, 260
BseMII	CTCAG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	122
BslFI	GGGAC	2 cut(s)	19, 260
BslI	CCNNNNNNNGG	2 cut(s)	117, 260
BsmAI	GTCTC	2 cut(s)	174, 263
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	2 cut(s)	19, 260
BsnI	GGCC	1 cut(s)	122
Bso31I	GGTCTC	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	88, 101
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	34, 35
BspMAI	CTGCAG	1 cut(s)	297
BspPI	GGATC	2 cut(s)	83, 96
BspTNI	GGTCTC	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	28, 274
BssMI	GATC	2 cut(s)	88, 101
BssT1I	CCWWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	98, 174
BstKTI	GATC	2 cut(s)	91, 104
BstMAI	GTCTC	2 cut(s)	174, 263
BstMBI	GATC	2 cut(s)	88, 101
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	33, 120
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	3 cut(s)	146, 165, 188
CviJI	RGCY	5 cut(s)	73, 110, 122, 241, 253
CviKI_1	RGCY	5 cut(s)	73, 110, 122, 241, 253
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	98, 174
DpnI	GATC	2 cut(s)	90, 103
DpnII	GATC	2 cut(s)	88, 101
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	28
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	3 cut(s)	149, 168, 191
FaiI	YATR	5 cut(s)	14, 147, 166, 189, 303
FalI	AAGNNNNNCTT	6 cut(s)	62, 94, 225, 257, 242, 274
FaqI	GGGAC	2 cut(s)	19, 260
FatI	CATG	3 cut(s)	145, 164, 187
Fnu4HI	GCNGC	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	149, 168, 191
HinfI	GANTC	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	88, 101, 278
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	196, 264
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	219, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	98, 174
Hsp92II	CATG	3 cut(s)	149, 168, 191
KflI	GGGWCCC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	88, 101
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	1 cut(s)	103
MaeI	CTAG	1 cut(s)	230
MalI	GATC	2 cut(s)	90, 103
MboI	GATC	2 cut(s)	88, 101
MboII	GAAGA	2 cut(s)	32, 151
MflI	RGATCY	1 cut(s)	101
MluCI	AATT	1 cut(s)	15
MnlI	CCTC	6 cut(s)	48, 49, 94, 107, 184, 284
MseI	TTAA	3 cut(s)	20, 69, 222
MwoI	GCNNNNNNNGC	1 cut(s)	79
NdeII	GATC	2 cut(s)	88, 101
NlaIII	CATG	3 cut(s)	149, 168, 191
NlaIV	GGNNCC	2 cut(s)	34, 35
PfeI	GAWTC	1 cut(s)	24
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	34, 35
PspPI	GGNCC	2 cut(s)	33, 120
PspPPI	RGGWCCY	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	101
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	20, 69, 222
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	2 cut(s)	88, 101
Sau96I	GGNCC	2 cut(s)	33, 120
SetI	ASST	5 cut(s)	11, 60, 99, 195, 243
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	33
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	67
TasI	AATT	1 cut(s)	15
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	3 cut(s)	20, 69, 222
Tru9I	TTAA	3 cut(s)	20, 69, 222
Van91I	CCANNNNNTGG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	33
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.