Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004463.1

Orthogroup ID

OG0013726

Physical Location & Seq

Genomic Coordinates Reverse (-)

3709 .. 6738

Gene Structure 3030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004463.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgttagcagtaaggatagcagtggatatatgtctacacaactgttcattttctccaatcggaatcaaatatcgaattcaagcatacaaagaggcagagctcaatgaagggatcaattctgataccttacttgtcgccgttcactgtctgagtcgtcggaaaactcagaaaacccgccgagagcaccgaagcttccccgcttcaattctctctcctgccttatcatctggacaaaccaacaccatggataggttgcgacagctcgagaggaagcttctgacaccgaagatacgactgggatccacctcgcgccgactagatgaagcgaatcagactgatccgacttcaggaagtgaccggaaaattgagaaaggatggggtttcccttcgcgggaaaacgggtcagcgagtgtcggtttggaaaaccacttctcagacgaccgcaaagccaccatctttgctgcagaaccaaggttagtgcaattgaattttcagggtattgacgaaagaaagggagaacagaacggggaagaaggaagagaaggagaagagacagactggaagctcttgattaaaagaatacaagtggaagaagcaaagaaaagaaaagaagcagaaaagaagaagaagaaaaaggagaaggaaacgggaagaatttcactaaacactgacagcgaagtagaggtcgatagcaaggtttggatccggtttgggagggatctttcagcaggagaagagatacatggtttggggaggaagacatggacaactaagggagacgaacaggaggcagcaaagaaggagtacattgactgcattaagttgctagaagtggagcttggggacaagccttcctttggcggcgagaccctcggatttgttttgcttctgcagctgtatgaccaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

303

Amino Acids

34.34

Weight (kDa)

8.52

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013726)

Species	Orthologous Gene IDs
malus_domestica	MD10G1196500.v1.1
pyrus_communis	pycom04g12760 pycom06g19880
rosa_chinensis	RchiOBHm_Chr5g0046211
rosa_multiflora	Rmu_sc0001334.1_g000023 Rmu_sc0004463.1_g000002 Rmu_sc0006571.1_g000022 Rmu_sc0039330.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052110 Rroxscaffold_1G00064840 Rroxscaffold_4G00311490
rosa_samantha	Rh2DG175500 Rh2DG257800 Rh5AG537600 Rh7AG425600
rosa_wichuraiana	Rw2G013310 Rw5G006300 Rw5G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	34
AccII	CGCG	2 cut(s)	310, 391
AciI	CCGC	5 cut(s)	175, 198, 391, 442, 861
AclWI	GGATC	7 cut(s)	119, 294, 307, 332, 697, 710, 726
AcsI	RAATTY	3 cut(s)	75, 487, 654
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	1 cut(s)	806
AfiI	CCNNNNNNNGG	4 cut(s)	249, 347, 391, 857
AgsI	TTSAA	3 cut(s)	80, 204, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	822, 854
AluBI	AGCT	7 cut(s)	100, 192, 262, 274, 565, 838, 895
AluI	AGCT	7 cut(s)	100, 192, 262, 274, 565, 838, 895
Alw21I	GWGCWC	2 cut(s)	102, 186
Alw26I	GTCTC	3 cut(s)	545, 771, 860
AlwI	GGATC	7 cut(s)	119, 294, 307, 332, 697, 710, 726
Ama87I	CYCGRG	1 cut(s)	263
ApeKI	GCWGC	3 cut(s)	461, 791, 892
ApoI	RAATTY	3 cut(s)	75, 487, 654
ArsI	GACNNNNNNTTYG	2 cut(s)	669, 701
Asp700I	GAANNNNTTC	1 cut(s)	655
AspLEI	GCGC	1 cut(s)	312
AvaI	CYCGRG	1 cut(s)	263
BamHI	GGATCC	2 cut(s)	299, 702
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	764
Bbv12I	GWGCWC	2 cut(s)	102, 186
BbvI	GCAGC	3 cut(s)	448, 803, 904
BccI	CCATC	2 cut(s)	369, 461
BceAI	ACGGC	1 cut(s)	122
BcoDI	GTCTC	3 cut(s)	545, 771, 860
BfaI	CTAG	2 cut(s)	317, 827
BfmI	CTRYAG	2 cut(s)	462, 890
BisI	GCNGC	4 cut(s)	462, 792, 862, 893
BlsI	GCNGC	4 cut(s)	463, 793, 863, 894
BmeT110I	CYCGRG	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	301, 704
BmrI	ACTGGG	1 cut(s)	305
BmuI	ACTGGG	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	764
BsaI	GGTCTC	1 cut(s)	860
BsaJI	CCNNGG	3 cut(s)	243, 470, 871
BsaWI	WCCGGW	2 cut(s)	357, 705
Bsc4I	CCNNNNNNNGG	4 cut(s)	249, 347, 391, 857
Bse1I	ACTGG	2 cut(s)	300, 563
BseDI	CCNNGG	3 cut(s)	243, 470, 871
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	4 cut(s)	249, 347, 391, 857
BseMII	CTCAG	3 cut(s)	140, 179, 447
BseNI	ACTGG	2 cut(s)	300, 563
BseXI	GCAGC	3 cut(s)	448, 803, 904
Bsh1236I	CGCG	2 cut(s)	310, 391
Bsh1285I	CGRYCG	1 cut(s)	442
BsiEI	CGRYCG	1 cut(s)	442
BsiHKAI	GWGCWC	2 cut(s)	102, 186
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	358, 706
BslFI	GGGAC	1 cut(s)	857
BslI	CCNNNNNNNGG	4 cut(s)	249, 347, 391, 857
BsmAI	GTCTC	3 cut(s)	545, 771, 860
BsmBI	CGTCTC	1 cut(s)	771
BsmFI	GGGAC	1 cut(s)	857
Bso31I	GGTCTC	1 cut(s)	860
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	102, 186
Bsp143I	GATC	5 cut(s)	111, 299, 337, 702, 718
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	5 cut(s)	175, 198, 391, 442, 861
BspCNI	CTCAG	3 cut(s)	141, 178, 446
BspFNI	CGCG	2 cut(s)	310, 391
BspLI	GGNNCC	2 cut(s)	301, 704
BspMAI	CTGCAG	2 cut(s)	466, 894
BspPI	GGATC	7 cut(s)	119, 294, 307, 332, 697, 710, 726
BspTNI	GGTCTC	1 cut(s)	860
BsrI	ACTGG	2 cut(s)	300, 563
BssECI	CCNNGG	3 cut(s)	243, 470, 871
BssMI	GATC	5 cut(s)	111, 299, 337, 702, 718
BssT1I	CCWWGG	2 cut(s)	243, 470
Bst4CI	ACNGT	2 cut(s)	44, 146
Bst6I	CTCTTC	3 cut(s)	532, 543, 729
BstDEI	CTNAG	4 cut(s)	149, 165, 433, 771
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	380
BstFNI	CGCG	2 cut(s)	310, 391
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	5 cut(s)	114, 302, 340, 705, 721
BstMAI	GTCTC	3 cut(s)	545, 771, 860
BstMBI	GATC	5 cut(s)	111, 299, 337, 702, 718
BstMCI	CGRYCG	1 cut(s)	442
BstMWI	GCNNNNNNNGC	1 cut(s)	892
BstSFI	CTRYAG	2 cut(s)	462, 890
BstUI	CGCG	2 cut(s)	310, 391
BstV1I	GCAGC	3 cut(s)	448, 803, 904
BstV2I	GAAGAC	1 cut(s)	764
BstX2I	RGATCY	3 cut(s)	299, 702, 718
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	3 cut(s)	299, 702, 718
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	380
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	3 cut(s)	27, 142, 666
CfoI	GCGC	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	805
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	3 cut(s)	244, 743, 762
CviJI	RGCY	9 cut(s)	100, 192, 262, 274, 449, 565, 838, 850, 895
CviKI_1	RGCY	9 cut(s)	100, 192, 262, 274, 449, 565, 838, 850, 895
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	4 cut(s)	149, 165, 433, 771
DpnI	GATC	5 cut(s)	113, 301, 339, 704, 720
DpnII	GATC	5 cut(s)	111, 299, 337, 702, 718
Eam1104I	CTCTTC	3 cut(s)	532, 543, 729
EarI	CTCTTC	3 cut(s)	532, 543, 729
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	243, 470
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	860
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	75
EcoT14I	CCWWGG	2 cut(s)	243, 470
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	2 cut(s)	243, 470
Esp3I	CGTCTC	1 cut(s)	771
FaeI	CATG	3 cut(s)	247, 746, 765
FaiI	YATR	7 cut(s)	29, 31, 85, 245, 744, 763, 900
FalI	AAGNNNNNCTT	4 cut(s)	822, 854, 839, 871
FaqI	GGGAC	1 cut(s)	857
FatI	CATG	3 cut(s)	243, 742, 761
FauI	CCCGC	3 cut(s)	182, 205, 384
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	4 cut(s)	462, 792, 862, 893
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	4 cut(s)	462, 792, 862, 893
FspBI	CTAG	2 cut(s)	317, 827
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	4 cut(s)	462, 792, 862, 893
HapII	CCGG	2 cut(s)	358, 706
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	3 cut(s)	247, 746, 765
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HindIII	AAGCTT	2 cut(s)	190, 272
HinfI	GANTC	3 cut(s)	63, 151, 328
HpaII	CCGG	2 cut(s)	358, 706
Hpy166II	GTNNAC	2 cut(s)	35, 142
Hpy188III	TCNNGA	4 cut(s)	228, 265, 348, 568
Hpy8I	GTNNAC	2 cut(s)	35, 142
Hpy99I	CGWCG	1 cut(s)	159
HpyAV	CCTTC	7 cut(s)	101, 396, 527, 536, 634, 793, 861
HpyCH4III	ACNGT	2 cut(s)	44, 146
HpyCH4V	TGCA	4 cut(s)	464, 481, 816, 892
HpyF10VI	GCNNNNNNNGC	1 cut(s)	892
HpyF3I	CTNAG	4 cut(s)	149, 165, 433, 771
Hsp92II	CATG	3 cut(s)	247, 746, 765
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	111, 299, 337, 702, 718
LmnI	GCTCC	1 cut(s)	835
Lsp1109I	GCAGC	3 cut(s)	448, 803, 904
MaeI	CTAG	2 cut(s)	317, 827
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	5 cut(s)	113, 301, 339, 704, 720
MboI	GATC	5 cut(s)	111, 299, 337, 702, 718
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	3 cut(s)	299, 702, 718
MhlI	GDGCHC	2 cut(s)	102, 186
MluCI	AATT	7 cut(s)	75, 115, 204, 363, 482, 487, 654
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	2 cut(s)	137, 365
MnlI	CCTC	8 cut(s)	85, 261, 316, 676, 708, 747, 781, 881
MroXI	GAANNNNTTC	1 cut(s)	655
MseI	TTAA	2 cut(s)	573, 819
MspA1I	CMGCKG	1 cut(s)	895
MspI	CCGG	2 cut(s)	358, 706
MunI	CAATTG	1 cut(s)	482
MvnI	CGCG	2 cut(s)	310, 391
MwoI	GCNNNNNNNGC	1 cut(s)	892
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	5 cut(s)	111, 299, 337, 702, 718
NlaIII	CATG	3 cut(s)	247, 746, 765
NlaIV	GGNNCC	2 cut(s)	301, 704
NmeAIII	GCCGAG	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	655
PfeI	GAWTC	2 cut(s)	63, 328
PkrI	GCNGC	4 cut(s)	463, 793, 863, 894
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	301, 704
PstI	CTGCAG	2 cut(s)	466, 894
PsuI	RGATCY	3 cut(s)	299, 702, 718
PvuII	CAGCTG	1 cut(s)	895
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	573, 819
SatI	GCNGC	4 cut(s)	462, 792, 862, 893
Sau3AI	GATC	5 cut(s)	111, 299, 337, 702, 718
SchI	GAGTC	1 cut(s)	160
SduI	GDGCHC	2 cut(s)	102, 186
SfcI	CTRYAG	2 cut(s)	462, 890
Sfr274I	CTCGAG	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	7 cut(s)	75, 115, 204, 363, 482, 487, 654
SsiI	CCGC	5 cut(s)	175, 198, 391, 442, 861
SspMI	CTAG	2 cut(s)	317, 827
SstI	GAGCTC	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	243, 470
TaaI	ACNGT	2 cut(s)	44, 146
TaqI	TCGA	3 cut(s)	73, 264, 687
TasI	AATT	7 cut(s)	75, 115, 204, 363, 482, 487, 654
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	1 cut(s)	864
TfiI	GAWTC	2 cut(s)	63, 328
Tru1I	TTAA	2 cut(s)	573, 819
Tru9I	TTAA	2 cut(s)	573, 819
TscAI	CASTG	3 cut(s)	27, 149, 673
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	3 cut(s)	461, 791, 892
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	3 cut(s)	36, 120, 336
TspRI	CASTG	3 cut(s)	27, 149, 673
XapI	RAATTY	3 cut(s)	75, 487, 654
XhoI	CTCGAG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	655
XspI	CTAG	2 cut(s)	317, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.