Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006571.1

Orthogroup ID

OG0013726

Physical Location & Seq

Genomic Coordinates Reverse (-)

80827 .. 82798

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006571.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgcgcatcctcattgctgatgctactgtcatggtcaccttgctgtgggattatggtgttattatcttcttgagagttgagatctcagatctacaatacaaaagcattgcactagataatttccttgttccatcaagcatcatttcccaagtcttcacagtcatcacctctgcagaaaaagaaaaagtgaaagaagaagctccttggcaagtgcgcctcgtgagtatacatggtttggggaggaagacatggacaactaaggcagacgaacatgtggcagcaaagaaggaatacattgactgcattaagttgctagaagtggagcttggggacaagccttcctttggcggcgagaccctcagatttgttttgcttctgcagttgtatgaccaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

132

Amino Acids

15.03

Weight (kDa)

5.2

Isoelectric Point (pI)

25.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013726)

Species	Orthologous Gene IDs
malus_domestica	MD10G1196500.v1.1
pyrus_communis	pycom04g12760 pycom06g19880
rosa_chinensis	RchiOBHm_Chr5g0046211
rosa_multiflora	Rmu_sc0001334.1_g000023 Rmu_sc0004463.1_g000002 Rmu_sc0006571.1_g000022 Rmu_sc0039330.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052110 Rroxscaffold_1G00064840 Rroxscaffold_4G00311490
rosa_samantha	Rh2DG175500 Rh2DG257800 Rh5AG537600 Rh7AG425600
rosa_wichuraiana	Rw2G013310 Rw5G006300 Rw5G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	226
AciI	CCGC	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	45, 344
AflIII	ACRYGT	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	2 cut(s)	200, 325
AluI	AGCT	2 cut(s)	200, 325
Alw26I	GTCTC	1 cut(s)	347
ApeKI	GCWGC	1 cut(s)	278
AspLEI	GCGC	2 cut(s)	6, 216
AsuHPI	GGTGA	2 cut(s)	28, 157
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	2 cut(s)	145, 251
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	2 cut(s)	113, 314
BfmI	CTRYAG	2 cut(s)	171, 377
BglII	AGATCT	2 cut(s)	81, 88
BisI	GCNGC	2 cut(s)	279, 349
BlsI	GCNGC	2 cut(s)	280, 350
BmsI	GCATC	3 cut(s)	10, 15, 147
BpiI	GAAGAC	2 cut(s)	145, 251
BpuEI	CTTGAG	1 cut(s)	91
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 344
Bse3DI	GCAATG	2 cut(s)	12, 105
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	6
BseLI	CCNNNNNNNGG	2 cut(s)	45, 344
BseMI	GCAATG	2 cut(s)	12, 105
BseMII	CTCAG	2 cut(s)	99, 373
BseXI	GCAGC	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	45, 344
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	344
Bso31I	GGTCTC	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	81, 88
BspACI	CCGC	1 cut(s)	348
BspCNI	CTCAG	2 cut(s)	98, 372
BspMAI	CTGCAG	2 cut(s)	175, 381
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	2 cut(s)	12, 105
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	2 cut(s)	81, 88
BssNAI	GTATAC	1 cut(s)	227
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	203
Bst1107I	GTATAC	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	28, 160
BstDEI	CTNAG	3 cut(s)	85, 258, 359
BstEII	GGTNACC	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	6, 216
BstKTI	GATC	2 cut(s)	84, 91
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	2 cut(s)	81, 88
BstNSI	RCATGY	1 cut(s)	275
BstPI	GGTNACC	1 cut(s)	34
BstSFI	CTRYAG	2 cut(s)	171, 377
BstV1I	GCAGC	1 cut(s)	290
BstV2I	GAAGAC	2 cut(s)	145, 251
BstX2I	RGATCY	2 cut(s)	81, 88
BstYI	RGATCY	2 cut(s)	81, 88
BstZ17I	GTATAC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	6
CfoI	GCGC	2 cut(s)	6, 216
CviAII	CATG	4 cut(s)	31, 230, 249, 272
CviJI	RGCY	3 cut(s)	200, 325, 337
CviKI_1	RGCY	3 cut(s)	200, 325, 337
DdeI	CTNAG	3 cut(s)	85, 258, 359
DpnI	GATC	2 cut(s)	83, 90
DpnII	GATC	2 cut(s)	81, 88
Eco130I	CCWWGG	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	347
Eco91I	GGTNACC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	4 cut(s)	34, 233, 252, 275
FaiI	YATR	7 cut(s)	32, 54, 227, 231, 250, 273, 387
FalI	AAGNNNNNCTT	4 cut(s)	309, 341, 326, 358
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	4 cut(s)	30, 229, 248, 271
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	279, 349
Fsp4HI	GCNGC	2 cut(s)	279, 349
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	2 cut(s)	113, 314
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 215
GluI	GCNGC	2 cut(s)	279, 349
HhaI	GCGC	2 cut(s)	6, 216
Hin1II	CATG	4 cut(s)	34, 233, 252, 275
Hin6I	GCGC	2 cut(s)	4, 214
HinP1I	GCGC	2 cut(s)	4, 214
HphI	GGTGA	2 cut(s)	28, 157
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	88, 362
Hpy188III	TCNNGA	2 cut(s)	70, 220
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	280, 348
HpyCH4III	ACNGT	2 cut(s)	28, 160
HpyCH4V	TGCA	4 cut(s)	110, 173, 303, 379
HpyF3I	CTNAG	3 cut(s)	85, 258, 359
Hsp92II	CATG	4 cut(s)	34, 233, 252, 275
HspAI	GCGC	2 cut(s)	4, 214
Kzo9I	GATC	2 cut(s)	81, 88
LmnI	GCTCC	2 cut(s)	205, 322
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	3 cut(s)	10, 15, 147
MaeI	CTAG	2 cut(s)	113, 314
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	83, 90
MboI	GATC	2 cut(s)	81, 88
MboII	GAAGA	4 cut(s)	58, 145, 206, 256
MflI	RGATCY	2 cut(s)	81, 88
MluCI	AATT	1 cut(s)	118
MnlI	CCTC	5 cut(s)	20, 178, 227, 234, 368
MseI	TTAA	1 cut(s)	306
NdeII	GATC	2 cut(s)	81, 88
NlaIII	CATG	4 cut(s)	34, 233, 252, 275
NmuCI	GTSAC	1 cut(s)	34
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	275
PciI	ACATGT	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	280, 350
PscI	ACATGT	1 cut(s)	271
PspEI	GGTNACC	1 cut(s)	34
PstI	CTGCAG	2 cut(s)	175, 381
PsuI	RGATCY	2 cut(s)	81, 88
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	2 cut(s)	279, 349
Sau3AI	GATC	2 cut(s)	81, 88
SetI	ASST	4 cut(s)	41, 170, 202, 327
SfaNI	GCATC	3 cut(s)	10, 15, 147
SfcI	CTRYAG	2 cut(s)	171, 377
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	1 cut(s)	348
SspMI	CTAG	2 cut(s)	113, 314
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	28, 160
TasI	AATT	1 cut(s)	118
TauI	GCSGC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	226
XspI	CTAG	2 cut(s)	113, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.