Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013726

Physical Location & Seq

Genomic Coordinates Forward (+)

86672092 .. 86678446

Gene Structure 6355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTTAGTGGTATGGCTGCAATCTACAAAATTTCACTGTCAAGCACATGAAGCACTTTTTACATCCTCAATCCTGACATTCCAGGGGCTGGAGCTTACAAACAAGCTTTTAAGATTCCTTGGGGCCCCTCTTCAGTACATTGACGAGGTTTGGACTGTTAAGCCACTCTTGCCCTCCGATCCTTACCTCAGATCCCAAGCCAAGTTCTGGGCCGACTTTGTGGACAAGAAGATACATGGTTTGGGGAGGAAGACATGGACAACTAAGGGAGACGAACACGAGGCAGCAAAGAAGGAATACATTGACTGCATTAAGTTGCTAGAAGTGGAGCTTGGGGACAAGCCTTCCTTTGGCGGCAAGACCCTCGGATTTGTTTTGCTTCTGCAGTTGTATGACCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

134

Amino Acids

15.37

Weight (kDa)

6.41

Isoelectric Point (pI)

27.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013726)

Species	Orthologous Gene IDs
malus_domestica	MD10G1196500.v1.1
pyrus_communis	pycom04g12760 pycom06g19880
rosa_chinensis	RchiOBHm_Chr5g0046211
rosa_multiflora	Rmu_sc0001334.1_g000023 Rmu_sc0004463.1_g000002 Rmu_sc0006571.1_g000022 Rmu_sc0039330.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052110 Rroxscaffold_1G00064840 Rroxscaffold_4G00311490
rosa_samantha	Rh2DG175500 Rh2DG257800 Rh5AG537600 Rh7AG425600
rosa_wichuraiana	Rw2G013310 Rw5G006300 Rw5G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	88, 207
AciI	CCGC	1 cut(s)	354
AclWI	GGATC	2 cut(s)	173, 186
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	88, 207, 350
AjnI	CCWGG	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	3 cut(s)	94, 106, 331
AluI	AGCT	3 cut(s)	94, 106, 331
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	2 cut(s)	173, 186
AlwNI	CAGNNNCTG	1 cut(s)	88
AoxI	GGCC	2 cut(s)	123, 210
ApaI	GGGCCC	1 cut(s)	127
ApeKI	GCWGC	2 cut(s)	16, 284
ApoI	RAATTY	1 cut(s)	29
AspS9I	GGNCC	3 cut(s)	123, 124, 210
BaeGI	GKGCMC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	3, 296
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	383
BisI	GCNGC	3 cut(s)	17, 285, 355
BlsI	GCNGC	3 cut(s)	18, 286, 356
Bme1390I	CCNGG	1 cut(s)	83
BmgT120I	GGNCC	3 cut(s)	123, 124, 210
BmiI	GGNNCC	3 cut(s)	124, 125, 126
BmrFI	CCNGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	82, 118, 364
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 207, 350
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	82, 118, 364
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	3 cut(s)	88, 207, 350
BseMII	CTCAG	1 cut(s)	202
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	3, 296
BshFI	GGCC	2 cut(s)	125, 212
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	3 cut(s)	88, 207, 350
BsmAI	GTCTC	1 cut(s)	264
BsmBI	CGTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	125, 212
Bsp120I	GGGCCC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	178, 191
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	2 cut(s)	125, 212
BspCNI	CTCAG	1 cut(s)	201
BspLI	GGNNCC	3 cut(s)	124, 125, 126
BspMAI	CTGCAG	1 cut(s)	387
BspPI	GGATC	2 cut(s)	173, 186
BssECI	CCNNGG	3 cut(s)	82, 118, 364
BssMI	GATC	2 cut(s)	178, 191
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	38, 157
Bst6I	CTCTTC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	188, 264
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	181, 194
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	2 cut(s)	178, 191
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 169
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	383
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	3, 296
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	125, 212
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	88
Cfr13I	GGNCC	3 cut(s)	123, 124, 210
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	3 cut(s)	47, 236, 255
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	188, 264
DpnI	GATC	2 cut(s)	180, 193
DpnII	GATC	2 cut(s)	178, 191
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	116
EcoO109I	RGGNCCY	2 cut(s)	123, 124
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	3 cut(s)	50, 239, 258
FaiI	YATR	5 cut(s)	13, 48, 237, 256, 393
FalI	AAGNNNNNCTT	6 cut(s)	152, 184, 315, 347, 332, 364
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	3 cut(s)	46, 235, 254
Fnu4HI	GCNGC	3 cut(s)	17, 285, 355
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	3 cut(s)	17, 285, 355
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	3 cut(s)	17, 285, 355
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	125, 212
Hin1II	CATG	3 cut(s)	50, 239, 258
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	178, 191, 368
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	286, 354
HpyCH4III	ACNGT	2 cut(s)	38, 157
HpyCH4V	TGCA	3 cut(s)	19, 309, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 169
HpyF3I	CTNAG	2 cut(s)	188, 264
Hsp92II	CATG	3 cut(s)	50, 239, 258
Kzo9I	GATC	2 cut(s)	178, 191
LmnI	GCTCC	2 cut(s)	91, 328
LpnPI	CCDG	5 cut(s)	68, 74, 86, 95, 193
Lsp1109I	GCAGC	2 cut(s)	3, 296
MaeI	CTAG	1 cut(s)	320
MalI	GATC	2 cut(s)	180, 193
MboI	GATC	2 cut(s)	178, 191
MboII	GAAGA	3 cut(s)	122, 241, 262
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	1 cut(s)	29
MnlI	CCTC	8 cut(s)	76, 138, 139, 184, 197, 240, 274, 374
MseI	TTAA	3 cut(s)	110, 159, 312
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	50, 169
NdeII	GATC	2 cut(s)	178, 191
NlaIII	CATG	3 cut(s)	50, 239, 258
NlaIV	GGNNCC	3 cut(s)	124, 125, 126
PfeI	GAWTC	1 cut(s)	114
PflMI	CCANNNNNTGG	2 cut(s)	88, 207
PkrI	GCNGC	3 cut(s)	18, 286, 356
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	3 cut(s)	124, 125, 126
PspOMI	GGGCCC	1 cut(s)	123
PspPI	GGNCC	3 cut(s)	123, 124, 210
PstI	CTGCAG	1 cut(s)	387
PstNI	CAGNNNCTG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SaqAI	TTAA	3 cut(s)	110, 159, 312
SatI	GCNGC	3 cut(s)	17, 285, 355
Sau3AI	GATC	2 cut(s)	178, 191
Sau96I	GGNCC	3 cut(s)	123, 124, 210
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	5 cut(s)	96, 108, 150, 189, 333
SfcI	CTRYAG	1 cut(s)	383
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	354
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	38, 157
TasI	AATT	1 cut(s)	29
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	3 cut(s)	110, 159, 312
Tru9I	TTAA	3 cut(s)	110, 159, 312
TscAI	CASTG	1 cut(s)	41
TseI	GCWGC	2 cut(s)	16, 284
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	41
Van91I	CCANNNNNTGG	2 cut(s)	88, 207
XapI	RAATTY	1 cut(s)	29
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.