MD11G1233500.v1.1

BRCT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012665
Physical Location & Seq
Forward (+)
34036357 .. 34041004
4648 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1233500.v1.1.491

Sequence Viewer

Length: 339 bp
ATGACGGAGGGAAGTTCACCGGCCAAGACGTTTGTAGGCGTCCGTTTCCTTCTTTTGGGATTCGACCCCTTTGACAAGCACCAGGTTCGATCTAAGCTTGTAGATTGCGGCGGAGAGGATGTTGCCCACTATTCCCCCAATTGCACCCACGTCATTGTGGATAAAATTGTGTATGATGATCCCGTATGTGTTGCTGCTCGAAATGACGCCAAGACTCTTGTCACCGCTTTATGGGTTCATCATAGTTTTGATGTCGAACTCCCCATTGATCCCACTTGGATTGTTTCAACCAAAGAAAAGAGATTCTCCACCACTATGAATTGTTTATTTGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRCT PHD PTCB-BRCT

Protein Analysis

113

Amino Acids

12.48

Weight (kDa)

5.88

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRCT PF00533 9 - 78 2.7e-06 BRCA1 C Terminus (BRCT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 108, 111, 225
AclWI GGATC 2 cut(s) 173, 263
AcoI YGGCCR 1 cut(s) 21
AcyI GRCGYC 2 cut(s) 39, 207
AfiI CCNNNNNNNGG 2 cut(s) 55, 231
AgsI TTSAA 1 cut(s) 288
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
AlwI GGATC 2 cut(s) 173, 263
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 9, 214
BbvI GCAGC 1 cut(s) 181
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciT130I CCWGG 1 cut(s) 83
BisI GCNGC 2 cut(s) 109, 195
BlsI GCNGC 2 cut(s) 110, 196
Bme1390I CCNGG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 83
BoxI GACNNNNGTC 1 cut(s) 218
BsaHI GRCGYC 2 cut(s) 39, 207
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 231
Bse118I RCCGGY 1 cut(s) 19
BseBI CCWGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 2 cut(s) 55, 231
BseXI GCAGC 1 cut(s) 181
BshFI GGCC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 55, 231
BsnI GGCC 1 cut(s) 23
Bsp143I GATC 3 cut(s) 89, 178, 268
BspACI CCGC 3 cut(s) 108, 111, 225
BspANI GGCC 1 cut(s) 23
BspPI GGATC 2 cut(s) 173, 263
BsrFI RCCGGY 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 19
BssMI GATC 3 cut(s) 89, 178, 268
BssNI GRCGYC 2 cut(s) 39, 207
Bst2UI CCWGG 1 cut(s) 83
BstACI GRCGYC 2 cut(s) 39, 207
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 3 cut(s) 92, 181, 271
BstMBI GATC 3 cut(s) 89, 178, 268
BstNI CCWGG 1 cut(s) 83
BstPAI GACNNNNGTC 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 23
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 19
CseI GACGC 2 cut(s) 28, 215
CsiI ACCWGGT 1 cut(s) 81
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviJI RGCY 2 cut(s) 23, 97
CviKI_1 RGCY 2 cut(s) 23, 97
DdeI CTNAG 1 cut(s) 93
DpnI GATC 3 cut(s) 91, 180, 270
DpnII GATC 3 cut(s) 89, 178, 268
EaeI YGGCCR 1 cut(s) 21
EciI GGCGGA 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 81
FaiI YATR 5 cut(s) 174, 187, 232, 243, 317
Fnu4HI GCNGC 2 cut(s) 109, 195
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 109, 195
GluI GCNGC 2 cut(s) 109, 195
HaeIII GGCC 1 cut(s) 23
HapII CCGG 1 cut(s) 20
HgaI GACGC 2 cut(s) 28, 215
Hin1I GRCGYC 2 cut(s) 39, 207
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 3 cut(s) 60, 214, 303
HpaII CCGG 1 cut(s) 20
HphI GGTGA 2 cut(s) 9, 214
Hpy166II GTNNAC 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 59
HpyCH4IV ACGT 2 cut(s) 29, 150
HpyCH4V TGCA 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 2 cut(s) 29, 150
Hsp92I GRCGYC 2 cut(s) 39, 207
Kzo9I GATC 3 cut(s) 89, 178, 268
LpnPI CCDG 3 cut(s) 33, 68, 95
Lsp1109I GCAGC 1 cut(s) 181
MabI ACCWGGT 1 cut(s) 81
MaeII ACGT 2 cut(s) 29, 150
MaeIII GTNAC 1 cut(s) 220
MalI GATC 3 cut(s) 91, 180, 270
MboI GATC 3 cut(s) 89, 178, 268
MfeI CAATTG 1 cut(s) 139
MluCI AATT 3 cut(s) 139, 165, 319
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 1 cut(s) 109
MslI CAYNNNNRTG 1 cut(s) 314
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 83
MunI CAATTG 1 cut(s) 139
MvaI CCWGG 1 cut(s) 83
NdeII GATC 3 cut(s) 89, 178, 268
NmuCI GTSAC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 60, 303
PkrI GCNGC 2 cut(s) 110, 196
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PshAI GACNNNNGTC 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 314
SatI GCNGC 2 cut(s) 109, 195
Sau3AI GATC 3 cut(s) 89, 178, 268
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 83
SetI ASST 4 cut(s) 32, 87, 99, 153
SexAI ACCWGGT 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 314
Sse9I AATT 3 cut(s) 139, 165, 319
SsiI CCGC 3 cut(s) 108, 111, 225
StyD4I CCNGG 1 cut(s) 81
TaiI ACGT 2 cut(s) 32, 153
TaqI TCGA 4 cut(s) 63, 88, 199, 255
TasI AATT 3 cut(s) 139, 165, 319
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 2 cut(s) 60, 303
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 227, 332
TspGWI ACGGA 2 cut(s) 20, 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.