BRCT domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD11G1233500.v1.1 |
| rosa_chinensis | RchiOBHm_Chr3g0497351 RchiOBHm_Chr5g0036631 |
| rosa_laevigata | RLG00000000377 RLG00000003078 RLG00000035111 RLG00000035829 |
| rosa_roxburghii | Rroxscaffold_3G00234550 |
| rosa_rugosa | Rorug02G0167100 Rorug02G0167200 Rorug02G0444700 Rorug05G0172700 Rorug05G0260600 Rorug07G0123400 |
| rosa_samantha | Rh1DG464600 Rh3AG336000 Rh3BG239800 Rh4BG001500 Rh6AG059400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 149, 222, 390 |
| AfaI | GTAC | 1 cut(s) | 259 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 271 |
| AluBI | AGCT | 2 cut(s) | 61, 211 |
| AluI | AGCT | 2 cut(s) | 61, 211 |
| Alw21I | GWGCWC | 1 cut(s) | 47 |
| Alw26I | GTCTC | 1 cut(s) | 245 |
| ApeKI | GCWGC | 4 cut(s) | 211, 305, 308, 386 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 318, 350 |
| AsuHPI | GGTGA | 1 cut(s) | 254 |
| Bbv12I | GWGCWC | 1 cut(s) | 47 |
| BbvI | GCAGC | 4 cut(s) | 198, 292, 295, 373 |
| BccI | CCATC | 2 cut(s) | 92, 300 |
| BceAI | ACGGC | 1 cut(s) | 354 |
| BcoDI | GTCTC | 1 cut(s) | 245 |
| BfaI | CTAG | 1 cut(s) | 215 |
| BfmI | CTRYAG | 1 cut(s) | 177 |
| BisI | GCNGC | 6 cut(s) | 149, 212, 306, 309, 387, 390 |
| BlsI | GCNGC | 6 cut(s) | 150, 213, 307, 310, 388, 391 |
| BsaI | GGTCTC | 1 cut(s) | 245 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 271 |
| Bse1I | ACTGG | 1 cut(s) | 201 |
| BseGI | GGATG | 2 cut(s) | 136, 292 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BseNI | ACTGG | 1 cut(s) | 201 |
| BseXI | GCAGC | 4 cut(s) | 198, 292, 295, 373 |
| BsiHKAI | GWGCWC | 1 cut(s) | 47 |
| BslFI | GGGAC | 1 cut(s) | 115 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BsmAI | GTCTC | 1 cut(s) | 245 |
| BsmFI | GGGAC | 1 cut(s) | 115 |
| Bso31I | GGTCTC | 1 cut(s) | 245 |
| Bsp1286I | GDGCHC | 1 cut(s) | 47 |
| Bsp143I | GATC | 1 cut(s) | 203 |
| BspACI | CCGC | 3 cut(s) | 149, 222, 390 |
| BspHI | TCATGA | 1 cut(s) | 64 |
| BspTNI | GGTCTC | 1 cut(s) | 245 |
| BsrI | ACTGG | 1 cut(s) | 201 |
| BssMI | GATC | 1 cut(s) | 203 |
| Bst4CI | ACNGT | 3 cut(s) | 29, 77, 331 |
| BstDEI | CTNAG | 1 cut(s) | 207 |
| BstF5I | GGATG | 2 cut(s) | 136, 292 |
| BstKTI | GATC | 1 cut(s) | 206 |
| BstMAI | GTCTC | 1 cut(s) | 245 |
| BstMBI | GATC | 1 cut(s) | 203 |
| BstSFI | CTRYAG | 1 cut(s) | 177 |
| BstV1I | GCAGC | 4 cut(s) | 198, 292, 295, 373 |
| BtsCI | GGATG | 2 cut(s) | 136, 292 |
| CciI | TCATGA | 1 cut(s) | 64 |
| Csp6I | GTAC | 1 cut(s) | 258 |
| CviAII | CATG | 2 cut(s) | 65, 383 |
| CviJI | RGCY | 5 cut(s) | 61, 148, 211, 341, 435 |
| CviKI_1 | RGCY | 5 cut(s) | 61, 148, 211, 341, 435 |
| CviQI | GTAC | 1 cut(s) | 258 |
| DdeI | CTNAG | 1 cut(s) | 207 |
| DpnI | GATC | 1 cut(s) | 205 |
| DpnII | GATC | 1 cut(s) | 203 |
| Eco31I | GGTCTC | 1 cut(s) | 245 |
| EcoT22I | ATGCAT | 1 cut(s) | 163 |
| FaeI | CATG | 2 cut(s) | 68, 386 |
| FaiI | YATR | 9 cut(s) | 12, 66, 159, 179, 288, 357, 384, 415, 420 |
| FaqI | GGGAC | 1 cut(s) | 115 |
| FatI | CATG | 2 cut(s) | 64, 382 |
| Fnu4HI | GCNGC | 6 cut(s) | 149, 212, 306, 309, 387, 390 |
| FokI | GGATG | 2 cut(s) | 143, 279 |
| Fsp4HI | GCNGC | 6 cut(s) | 149, 212, 306, 309, 387, 390 |
| FspBI | CTAG | 1 cut(s) | 215 |
| GluI | GCNGC | 6 cut(s) | 149, 212, 306, 309, 387, 390 |
| Hin1II | CATG | 2 cut(s) | 68, 386 |
| HindIII | AAGCTT | 1 cut(s) | 59 |
| HinfI | GANTC | 1 cut(s) | 103 |
| HphI | GGTGA | 1 cut(s) | 254 |
| Hpy188I | TCNGA | 1 cut(s) | 117 |
| Hpy188III | TCNNGA | 1 cut(s) | 65 |
| HpyAV | CCTTC | 3 cut(s) | 309, 314, 389 |
| HpyCH4III | ACNGT | 3 cut(s) | 29, 77, 331 |
| HpyCH4V | TGCA | 1 cut(s) | 161 |
| HpyF3I | CTNAG | 1 cut(s) | 207 |
| Hsp92II | CATG | 2 cut(s) | 68, 386 |
| Kzo9I | GATC | 1 cut(s) | 203 |
| LpnPI | CCDG | 2 cut(s) | 182, 309 |
| Lsp1109I | GCAGC | 4 cut(s) | 198, 292, 295, 373 |
| MaeI | CTAG | 1 cut(s) | 215 |
| MaeIII | GTNAC | 1 cut(s) | 334 |
| MalI | GATC | 1 cut(s) | 205 |
| MboI | GATC | 1 cut(s) | 203 |
| MfeI | CAATTG | 1 cut(s) | 32 |
| MhlI | GDGCHC | 1 cut(s) | 47 |
| MluCI | AATT | 2 cut(s) | 32, 253 |
| MlyI | GAGTC | 1 cut(s) | 97 |
| MmeI | TCCRAC | 1 cut(s) | 349 |
| MnlI | CCTC | 2 cut(s) | 121, 275 |
| Mph1103I | ATGCAT | 1 cut(s) | 163 |
| MseI | TTAA | 1 cut(s) | 144 |
| MslI | CAYNNNNRTG | 1 cut(s) | 52 |
| MspA1I | CMGCKG | 1 cut(s) | 392 |
| MunI | CAATTG | 1 cut(s) | 32 |
| NdeII | GATC | 1 cut(s) | 203 |
| NlaIII | CATG | 2 cut(s) | 68, 386 |
| NmuCI | GTSAC | 1 cut(s) | 334 |
| NsiI | ATGCAT | 1 cut(s) | 163 |
| PagI | TCATGA | 1 cut(s) | 64 |
| PkrI | GCNGC | 6 cut(s) | 150, 213, 307, 310, 388, 391 |
| PleI | GAGTC | 1 cut(s) | 97 |
| PpsI | GAGTC | 1 cut(s) | 97 |
| RsaI | GTAC | 1 cut(s) | 259 |
| RsaNI | GTAC | 1 cut(s) | 258 |
| RseI | CAYNNNNRTG | 1 cut(s) | 52 |
| SaqAI | TTAA | 1 cut(s) | 144 |
| SatI | GCNGC | 6 cut(s) | 149, 212, 306, 309, 387, 390 |
| Sau3AI | GATC | 1 cut(s) | 203 |
| SchI | GAGTC | 1 cut(s) | 97 |
| SduI | GDGCHC | 1 cut(s) | 47 |
| SetI | ASST | 4 cut(s) | 63, 213, 267, 287 |
| SfcI | CTRYAG | 1 cut(s) | 177 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 52 |
| Sse9I | AATT | 2 cut(s) | 32, 253 |
| SsiI | CCGC | 3 cut(s) | 149, 222, 390 |
| SspMI | CTAG | 1 cut(s) | 215 |
| TaaI | ACNGT | 3 cut(s) | 29, 77, 331 |
| TaqI | TCGA | 2 cut(s) | 202, 313 |
| TasI | AATT | 2 cut(s) | 32, 253 |
| TatI | WGTACW | 1 cut(s) | 257 |
| TauI | GCSGC | 2 cut(s) | 151, 392 |
| Tru1I | TTAA | 1 cut(s) | 144 |
| Tru9I | TTAA | 1 cut(s) | 144 |
| TseFI | GTSAC | 1 cut(s) | 334 |
| TseI | GCWGC | 4 cut(s) | 211, 305, 308, 386 |
| Tsp45I | GTSAC | 1 cut(s) | 334 |
| TspDTI | ATGAA | 4 cut(s) | 53, 155, 201, 371 |
| XspI | CTAG | 1 cut(s) | 215 |
| Zsp2I | ATGCAT | 1 cut(s) | 163 |