Rh4BG001500

BRCT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012665
Physical Location & Seq
Reverse (-)
290018 .. 292851
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG001500.1

Sequence Viewer

Length: 921 bp
ATGGTGTCGTATAGAGCAACCACTTACGGTCAGTTGGTTGAGAGCACATTTTTGTGGAAGCTTCGTGATTTACGCTGTAATAAGGCAGAAGTGAGTGATGGGATTCATCTTGTTATGATCGGGTTTGAGGACGTTTTGGGTGTTAAGCCGCAACAAATGCGTTTCATTGTGATGCATGCTATAGCAGATGAAGTGAAACTGCTGTCGGAACCCTTCAAGATCTTTGAATTTGATTTATTGAAACGGCCACAGAGTCGTGGAGAAACTGAACTATCTATAAAGGCGACTAATGAGGGTCGAGTTCATGCTGTTCGATCTAAGCTGCTAGATTGCGGTGGGTCTAATGTTGGTCTCTATTCCCCAAATTGCACTCACCTCATTGTGGATAGGATTGCCTATGACCATCCTGTGTGTGCTGCTGCTCGAAAGGACGGCAAAACGGTTGTCACGGCTTTGTGGGTTCTTCATAGTTTTGATGTTGGACTGCCCCTTGATGCTGCTGCTATTATATACAGACCTCTCAAACATTTGAATGGTATTCTTGGTGCCAAGAATTTATTAATGTGCTTGACTGGATATCAAGGACAAGATAGAGATGACATTATGACAATGGTTGGTTTAATGGGTGCTCAGTTTTCTAAACCATTGGTGGCAAGCAAAGTCACTCATCTCATTTGCTATAAATTTGAAGAAAAGCTAGTGCCTAAAAAGGTTTCCAAGAAGAAGGAGAAGGATGTCAAATCTGTCCCCATTAACCACAAACATAATGACCAGGGCAAGTTGGCTGAGGTGGTAGATAATGCAAAACTGGAAGAAGATCAAGCTCATGTGCATGATGACCCTATAGGGTATATAGATTTGACAACAAAGCGAGAAAAATCAAAGGTATATATGTTGGTATATGAAACTAGTGCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRCT PHD PTCB-BRCT

Protein Analysis

306

Amino Acids

34.33

Weight (kDa)

8.72

Isoelectric Point (pI)

27.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTCB-BRCT PF12738 186 - 230 6.6e-10 twin BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 545
AciI CCGC 2 cut(s) 149, 333
AcoI YGGCCR 1 cut(s) 245
AcsI RAATTY 3 cut(s) 227, 553, 683
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 5 cut(s) 217, 227, 241, 532, 689
AhlI ACTAGT 1 cut(s) 908
AjnI CCWGG 1 cut(s) 771
AluBI AGCT 4 cut(s) 61, 322, 697, 824
AluI AGCT 4 cut(s) 61, 322, 697, 824
Alw21I GWGCWC 2 cut(s) 47, 631
Alw26I GTCTC 1 cut(s) 356
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 5 cut(s) 322, 416, 419, 497, 500
ApoI RAATTY 3 cut(s) 227, 553, 683
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
AseI ATTAAT 1 cut(s) 560
AsuHPI GGTGA 1 cut(s) 365
BanI GGYRCC 1 cut(s) 545
Bbv12I GWGCWC 2 cut(s) 47, 631
BbvCI CCTCAGC 1 cut(s) 786
BbvI GCAGC 5 cut(s) 309, 403, 406, 484, 487
BccI CCATC 2 cut(s) 92, 411
BceAI ACGGC 3 cut(s) 260, 448, 465
BciT130I CCWGG 1 cut(s) 773
BcoDI GTCTC 1 cut(s) 356
BcuI ACTAGT 1 cut(s) 908
BfaI CTAG 3 cut(s) 326, 698, 909
BfmI CTRYAG 2 cut(s) 180, 843
BglII AGATCT 1 cut(s) 219
BisI GCNGC 6 cut(s) 149, 323, 417, 420, 498, 501
BlsI GCNGC 6 cut(s) 150, 324, 418, 421, 499, 502
Bme1390I CCNGG 1 cut(s) 773
BmiI GGNNCC 2 cut(s) 210, 547
BmrFI CCNGG 1 cut(s) 773
BmsI GCATC 2 cut(s) 162, 484
Bpu10I CCTNAGC 1 cut(s) 786
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 772
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 2 cut(s) 577, 813
BseBI CCWGG 1 cut(s) 773
BseDI CCNNGG 1 cut(s) 772
BseGI GGATG 2 cut(s) 403, 739
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 2 cut(s) 644, 777
BseNI ACTGG 2 cut(s) 577, 813
BseXI GCAGC 5 cut(s) 309, 403, 406, 484, 487
BshFI GGCC 1 cut(s) 247
BshNI GGYRCC 1 cut(s) 545
BsiHKAI GWGCWC 2 cut(s) 47, 631
BslFI GGGAC 1 cut(s) 731
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 731
BsnI GGCC 1 cut(s) 247
Bso31I GGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 47, 631
Bsp143I GATC 4 cut(s) 117, 219, 314, 817
BspACI CCGC 2 cut(s) 149, 333
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 2 cut(s) 643, 778
BspLI GGNNCC 2 cut(s) 210, 547
BspT107I GGYRCC 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 356
BsrI ACTGG 2 cut(s) 577, 813
BssECI CCNNGG 1 cut(s) 772
BssMI GATC 4 cut(s) 117, 219, 314, 817
Bst2UI CCWGG 1 cut(s) 773
Bst4CI ACNGT 2 cut(s) 29, 442
BstAPI GCANNNNNTGC 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 177, 655
BstDEI CTNAG 3 cut(s) 318, 630, 786
BstF5I GGATG 2 cut(s) 403, 739
BstKTI GATC 4 cut(s) 120, 222, 317, 820
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 4 cut(s) 117, 219, 314, 817
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 773
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 771
BstSFI CTRYAG 2 cut(s) 180, 843
BstV1I GCAGC 5 cut(s) 309, 403, 406, 484, 487
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 2 cut(s) 403, 739
Cac8I GCNNGC 2 cut(s) 177, 655
CviAII CATG 4 cut(s) 176, 305, 827, 833
CviJI RGCY 8 cut(s) 61, 148, 247, 322, 452, 697, 785, 824
CviKI_1 RGCY 8 cut(s) 61, 148, 247, 322, 452, 697, 785, 824
DdeI CTNAG 3 cut(s) 318, 630, 786
DpnI GATC 4 cut(s) 119, 221, 316, 819
DpnII GATC 4 cut(s) 117, 219, 314, 817
EaeI YGGCCR 1 cut(s) 245
Eco31I GGTCTC 1 cut(s) 356
Eco32I GATATC 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 771
EcoRV GATATC 1 cut(s) 578
EcoT22I ATGCAT 1 cut(s) 177
FaeI CATG 4 cut(s) 179, 308, 830, 836
FaqI GGGAC 1 cut(s) 731
FatI CATG 4 cut(s) 175, 304, 826, 832
Fnu4HI GCNGC 6 cut(s) 149, 323, 417, 420, 498, 501
FokI GGATG 2 cut(s) 390, 746
Fsp4HI GCNGC 6 cut(s) 149, 323, 417, 420, 498, 501
FspBI CTAG 3 cut(s) 326, 698, 909
GluI GCNGC 6 cut(s) 149, 323, 417, 420, 498, 501
HaeIII GGCC 1 cut(s) 247
Hin1II CATG 4 cut(s) 179, 308, 830, 836
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 2 cut(s) 103, 253
HphI GGTGA 1 cut(s) 365
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 65, 217
HpyAV CCTTC 3 cut(s) 223, 718, 724
HpyCH4III ACNGT 2 cut(s) 29, 442
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 5 cut(s) 175, 369, 803, 832, 914
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 3 cut(s) 318, 630, 786
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 4 cut(s) 179, 308, 830, 836
Kzo9I GATC 4 cut(s) 117, 219, 314, 817
LpnPI CCDG 5 cut(s) 420, 558, 758, 785, 794
Lsp1109I GCAGC 5 cut(s) 309, 403, 406, 484, 487
LweI GCATC 2 cut(s) 162, 484
MaeI CTAG 3 cut(s) 326, 698, 909
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 2 cut(s) 445, 661
MalI GATC 4 cut(s) 119, 221, 316, 819
MboI GATC 4 cut(s) 117, 219, 314, 817
MboII GAAGA 5 cut(s) 455, 701, 733, 824, 827
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 2 cut(s) 47, 631
MluCI AATT 4 cut(s) 227, 364, 553, 683
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 2 cut(s) 186, 460
MnlI CCTC 5 cut(s) 121, 286, 386, 528, 781
Mph1103I ATGCAT 1 cut(s) 177
MseI TTAA 4 cut(s) 144, 560, 620, 753
MslI CAYNNNNRTG 4 cut(s) 52, 170, 531, 831
MspR9I CCNGG 1 cut(s) 773
MvaI CCWGG 1 cut(s) 773
MwoI GCNNNNNNNGC 1 cut(s) 157
NdeII GATC 4 cut(s) 117, 219, 314, 817
NlaIII CATG 4 cut(s) 179, 308, 830, 836
NlaIV GGNNCC 2 cut(s) 210, 547
NmuCI GTSAC 2 cut(s) 445, 661
NsiI ATGCAT 1 cut(s) 177
NspI RCATGY 1 cut(s) 179
PaeI GCATGC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 6 cut(s) 150, 324, 418, 421, 499, 502
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PshBI ATTAAT 1 cut(s) 560
Psp6I CCWGG 1 cut(s) 771
PspGI CCWGG 1 cut(s) 771
PspN4I GGNNCC 2 cut(s) 210, 547
PsuI RGATCY 1 cut(s) 219
RseI CAYNNNNRTG 4 cut(s) 52, 170, 531, 831
SaqAI TTAA 4 cut(s) 144, 560, 620, 753
SatI GCNGC 6 cut(s) 149, 323, 417, 420, 498, 501
Sau3AI GATC 4 cut(s) 117, 219, 314, 817
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 773
SduI GDGCHC 2 cut(s) 47, 631
SfaNI GCATC 2 cut(s) 162, 484
SfcI CTRYAG 2 cut(s) 180, 843
SmiMI CAYNNNNRTG 4 cut(s) 52, 170, 531, 831
SpeI ACTAGT 1 cut(s) 908
SphI GCATGC 1 cut(s) 179
Sse9I AATT 4 cut(s) 227, 364, 553, 683
SsiI CCGC 2 cut(s) 149, 333
SspMI CTAG 3 cut(s) 326, 698, 909
StyD4I CCNGG 1 cut(s) 771
TaaI ACNGT 2 cut(s) 29, 442
TaiI ACGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 298, 313, 424
TasI AATT 4 cut(s) 227, 364, 553, 683
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 4 cut(s) 144, 560, 620, 753
Tru9I TTAA 4 cut(s) 144, 560, 620, 753
TseFI GTSAC 2 cut(s) 445, 661
TseI GCWGC 5 cut(s) 322, 416, 419, 497, 500
Tsp45I GTSAC 2 cut(s) 445, 661
TspDTI ATGAA 6 cut(s) 95, 154, 204, 293, 455, 918
VspI ATTAAT 1 cut(s) 560
XapI RAATTY 3 cut(s) 227, 553, 683
XceI RCATGY 1 cut(s) 179
XspI CTAG 3 cut(s) 326, 698, 909
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.