NADH dehydrogenase (Ubiquinone) iron-sulfur protein
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD11G1233500.v1.1 |
| rosa_chinensis | RchiOBHm_Chr3g0497351 RchiOBHm_Chr5g0036631 |
| rosa_laevigata | RLG00000000377 RLG00000003078 RLG00000035111 RLG00000035829 |
| rosa_roxburghii | Rroxscaffold_3G00234550 |
| rosa_rugosa | Rorug02G0167100 Rorug02G0167200 Rorug02G0444700 Rorug05G0172700 Rorug05G0260600 Rorug07G0123400 |
| rosa_samantha | Rh1DG464600 Rh3AG336000 Rh3BG239800 Rh4BG001500 Rh6AG059400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 104 |
| AclI | AACGTT | 1 cut(s) | 162 |
| AcsI | RAATTY | 1 cut(s) | 323 |
| AcuI | CTGAAG | 1 cut(s) | 299 |
| AgsI | TTSAA | 3 cut(s) | 26, 137, 213 |
| AluBI | AGCT | 1 cut(s) | 340 |
| AluI | AGCT | 1 cut(s) | 340 |
| ApeKI | GCWGC | 2 cut(s) | 229, 353 |
| ApoI | RAATTY | 1 cut(s) | 323 |
| AspLEI | GCGC | 1 cut(s) | 234 |
| AsuHPI | GGTGA | 1 cut(s) | 311 |
| BbvI | GCAGC | 2 cut(s) | 241, 340 |
| BccI | CCATC | 1 cut(s) | 170 |
| BclI | TGATCA | 1 cut(s) | 97 |
| BfaI | CTAG | 1 cut(s) | 272 |
| BisI | GCNGC | 2 cut(s) | 230, 354 |
| BlsI | GCNGC | 2 cut(s) | 231, 355 |
| BmrI | ACTGGG | 1 cut(s) | 135 |
| BmsI | GCATC | 1 cut(s) | 336 |
| BmuI | ACTGGG | 1 cut(s) | 135 |
| BpmI | CTGGAG | 1 cut(s) | 92 |
| Bpu10I | CCTNAGC | 1 cut(s) | 119 |
| Bse1I | ACTGG | 1 cut(s) | 130 |
| BseNI | ACTGG | 1 cut(s) | 130 |
| BseRI | GAGGAG | 1 cut(s) | 415 |
| BseXI | GCAGC | 2 cut(s) | 241, 340 |
| BsgI | GTGCAG | 2 cut(s) | 234, 248 |
| Bsh1236I | CGCG | 1 cut(s) | 104 |
| BslFI | GGGAC | 1 cut(s) | 344 |
| BsmFI | GGGAC | 1 cut(s) | 344 |
| BsmI | GAATGC | 1 cut(s) | 49 |
| Bsp143I | GATC | 1 cut(s) | 97 |
| BspFNI | CGCG | 1 cut(s) | 104 |
| BspHI | TCATGA | 1 cut(s) | 145 |
| BsrI | ACTGG | 1 cut(s) | 130 |
| BssMI | GATC | 1 cut(s) | 97 |
| Bst4CI | ACNGT | 1 cut(s) | 383 |
| BstC8I | GCNNGC | 1 cut(s) | 351 |
| BstDEI | CTNAG | 2 cut(s) | 39, 119 |
| BstFNI | CGCG | 1 cut(s) | 104 |
| BstHHI | GCGC | 1 cut(s) | 234 |
| BstKTI | GATC | 1 cut(s) | 100 |
| BstMBI | GATC | 1 cut(s) | 97 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 13, 346 |
| BstUI | CGCG | 1 cut(s) | 104 |
| BstV1I | GCAGC | 2 cut(s) | 241, 340 |
| Cac8I | GCNNGC | 1 cut(s) | 351 |
| CciI | TCATGA | 1 cut(s) | 145 |
| CfoI | GCGC | 1 cut(s) | 234 |
| CviAII | CATG | 1 cut(s) | 146 |
| CviJI | RGCY | 2 cut(s) | 7, 340 |
| CviKI_1 | RGCY | 2 cut(s) | 7, 340 |
| DdeI | CTNAG | 2 cut(s) | 39, 119 |
| DpnI | GATC | 1 cut(s) | 99 |
| DpnII | GATC | 1 cut(s) | 97 |
| Eco57I | CTGAAG | 1 cut(s) | 299 |
| FaeI | CATG | 1 cut(s) | 149 |
| FaiI | YATR | 4 cut(s) | 32, 147, 245, 423 |
| FaqI | GGGAC | 1 cut(s) | 344 |
| FatI | CATG | 1 cut(s) | 145 |
| FbaI | TGATCA | 1 cut(s) | 97 |
| Fnu4HI | GCNGC | 2 cut(s) | 230, 354 |
| Fsp4HI | GCNGC | 2 cut(s) | 230, 354 |
| FspBI | CTAG | 1 cut(s) | 272 |
| GlaI | GCGC | 1 cut(s) | 233 |
| GluI | GCNGC | 2 cut(s) | 230, 354 |
| GsuI | CTGGAG | 1 cut(s) | 92 |
| HhaI | GCGC | 1 cut(s) | 234 |
| Hin1II | CATG | 1 cut(s) | 149 |
| Hin6I | GCGC | 1 cut(s) | 232 |
| HinP1I | GCGC | 1 cut(s) | 232 |
| HinfI | GANTC | 3 cut(s) | 140, 209, 240 |
| HphI | GGTGA | 1 cut(s) | 311 |
| Hpy166II | GTNNAC | 2 cut(s) | 302, 388 |
| Hpy188I | TCNGA | 1 cut(s) | 156 |
| Hpy188III | TCNNGA | 5 cut(s) | 71, 86, 146, 206, 317 |
| Hpy8I | GTNNAC | 2 cut(s) | 302, 388 |
| Hpy99I | CGWCG | 1 cut(s) | 22 |
| HpyAV | CCTTC | 1 cut(s) | 403 |
| HpyCH4III | ACNGT | 1 cut(s) | 383 |
| HpyCH4IV | ACGT | 1 cut(s) | 162 |
| HpyCH4V | TGCA | 2 cut(s) | 229, 251 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 13, 346 |
| HpyF3I | CTNAG | 2 cut(s) | 39, 119 |
| HpySE526I | ACGT | 1 cut(s) | 162 |
| Hsp92II | CATG | 1 cut(s) | 149 |
| HspAI | GCGC | 1 cut(s) | 232 |
| Ksp22I | TGATCA | 1 cut(s) | 97 |
| Kzo9I | GATC | 1 cut(s) | 97 |
| LmnI | GCTCC | 2 cut(s) | 73, 281 |
| LpnPI | CCDG | 4 cut(s) | 56, 99, 111, 302 |
| Lsp1109I | GCAGC | 2 cut(s) | 241, 340 |
| LweI | GCATC | 1 cut(s) | 336 |
| MaeI | CTAG | 1 cut(s) | 272 |
| MaeII | ACGT | 1 cut(s) | 162 |
| MalI | GATC | 1 cut(s) | 99 |
| MboI | GATC | 1 cut(s) | 97 |
| MboII | GAAGA | 2 cut(s) | 38, 149 |
| MluCI | AATT | 3 cut(s) | 219, 294, 323 |
| MnlI | CCTC | 7 cut(s) | 18, 47, 178, 191, 377, 393, 429 |
| MseI | TTAA | 1 cut(s) | 218 |
| Mva1269I | GAATGC | 1 cut(s) | 49 |
| MvnI | CGCG | 1 cut(s) | 104 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 13, 346 |
| NdeII | GATC | 1 cut(s) | 97 |
| NlaIII | CATG | 1 cut(s) | 149 |
| PagI | TCATGA | 1 cut(s) | 145 |
| PctI | GAATGC | 1 cut(s) | 49 |
| PfeI | GAWTC | 3 cut(s) | 140, 209, 240 |
| PkrI | GCNGC | 2 cut(s) | 231, 355 |
| Psp1406I | AACGTT | 1 cut(s) | 162 |
| SaqAI | TTAA | 1 cut(s) | 218 |
| SatI | GCNGC | 2 cut(s) | 230, 354 |
| Sau3AI | GATC | 1 cut(s) | 97 |
| SetI | ASST | 5 cut(s) | 68, 165, 189, 202, 342 |
| SfaNI | GCATC | 1 cut(s) | 336 |
| SmlI | CTYRAG | 1 cut(s) | 9 |
| SmoI | CTYRAG | 1 cut(s) | 9 |
| Sse9I | AATT | 3 cut(s) | 219, 294, 323 |
| SspMI | CTAG | 1 cut(s) | 272 |
| TaaI | ACNGT | 1 cut(s) | 383 |
| TaiI | ACGT | 1 cut(s) | 165 |
| TaqI | TCGA | 1 cut(s) | 196 |
| TasI | AATT | 3 cut(s) | 219, 294, 323 |
| TfiI | GAWTC | 3 cut(s) | 140, 209, 240 |
| Tru1I | TTAA | 1 cut(s) | 218 |
| Tru9I | TTAA | 1 cut(s) | 218 |
| TseI | GCWGC | 2 cut(s) | 229, 353 |
| TspDTI | ATGAA | 2 cut(s) | 17, 162 |
| XapI | RAATTY | 1 cut(s) | 323 |
| XspI | CTAG | 1 cut(s) | 272 |