Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012665

Physical Location & Seq

Genomic Coordinates Reverse (-)

770363 .. 770868

Gene Structure 506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000377

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCAAGATGCCAGCGGAATGATCGGCCGGACAGAGGCTAGGGCTGCTTCCTTCCCACCGCGTCCTTCCTTGTGTGTCGGAGATATAAAGCGAGTGCACCGGAAAAGAACGGGAACTGGGTCGATCTATTCTATGGCGAAGCATCCGAAGCATAACTGCGCACTCACACGATATCTTTGCCGAGAGATAGGAGCATTCGGTGGAACCGGTGAACTACACTTGCTTCTGGATAGATGTGTGGGACAGAGGGCTCGTGGTACCTGCTGCCCACCCTTCCTCCTCTGCTTTGAGAACCGCGTGAACGGAGAGTGGGCAGAAGGGAAGGAGAAAGGGAAGGCAGAGGTAGTACTTCGAATGGCGAAGAGAGGCGGCTCGGCAGGGAAGGAATGGGATATCATCAAGGATGACTTCTTTGTTGGCGAAACGAAGGGTCCAAAGGACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Complex1_49kDa

Protein Analysis

149

Amino Acids

16.28

Weight (kDa)

9.42

Isoelectric Point (pI)

15.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012665)

Species	Orthologous Gene IDs
malus_domestica	MD11G1233500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0497351 RchiOBHm_Chr5g0036631
rosa_laevigata	RLG00000000377 RLG00000003078 RLG00000035111 RLG00000035829
rosa_roxburghii	Rroxscaffold_3G00234550
rosa_rugosa	Rorug02G0167100 Rorug02G0167200 Rorug02G0444700 Rorug05G0172700 Rorug05G0260600 Rorug07G0123400
rosa_samantha	Rh1DG464600 Rh3AG336000 Rh3BG239800 Rh4BG001500 Rh6AG059400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	269
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AccII	CGCG	2 cut(s)	61, 297
AciI	CCGC	4 cut(s)	15, 59, 295, 369
AcoI	YGGCCR	1 cut(s)	25
AfaI	GTAC	2 cut(s)	259, 348
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgeI	ACCGGT	1 cut(s)	206
Alw21I	GWGCWC	1 cut(s)	99
Alw44I	GTGCAC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	25
ApaLI	GTGCAC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	44, 264
AsiGI	ACCGGT	1 cut(s)	206
Asp718I	GGTACC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	431, 439
AsuHPI	GGTGA	1 cut(s)	221
AsuII	TTCGAA	1 cut(s)	352
AvaII	GGWCC	2 cut(s)	431, 439
BaeGI	GKGCMC	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	253
BauI	CACGAG	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	31, 251
BcgI	CGANNNNNNTGC	2 cut(s)	159, 193
BfaI	CTAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	45, 265, 370
BlsI	GCNGC	3 cut(s)	46, 266, 371
BmcAI	AGTACT	1 cut(s)	348
Bme18I	GGWCC	2 cut(s)	431, 439
BmgT120I	GGNCC	2 cut(s)	431, 439
BmiI	GGNNCC	3 cut(s)	205, 259, 432
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	352
BsaWI	WCCGGW	2 cut(s)	99, 206
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	121
BseGI	GGATG	2 cut(s)	142, 409
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	99
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	31, 251
Bsh1236I	CGCG	2 cut(s)	61, 297
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	257
BshTI	ACCGGT	1 cut(s)	206
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	3 cut(s)	28, 100, 207
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	352
Bsp1286I	GDGCHC	2 cut(s)	99, 253
Bsp143I	GATC	2 cut(s)	21, 123
BspACI	CCGC	4 cut(s)	15, 59, 295, 369
BspANI	GGCC	1 cut(s)	27
BspFNI	CGCG	2 cut(s)	61, 297
BspLI	GGNNCC	3 cut(s)	205, 259, 432
BspMI	ACCTGC	1 cut(s)	269
BspT104I	TTCGAA	1 cut(s)	352
BspT107I	GGYRCC	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	206
BssMI	GATC	2 cut(s)	21, 123
BssSI	CACGAG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	356
BstBI	TTCGAA	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	142, 409
BstFNI	CGCG	2 cut(s)	61, 297
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	24, 126
BstMBI	GATC	2 cut(s)	21, 123
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 148
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	2 cut(s)	61, 297
BstV1I	GCAGC	2 cut(s)	31, 251
BstZI	CGGCCG	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	142, 409
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	431, 439
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	258, 347
CspAI	ACCGGT	1 cut(s)	206
CviJI	RGCY	5 cut(s)	27, 38, 44, 251, 372
CviKI_1	RGCY	5 cut(s)	27, 38, 44, 251, 372
CviQI	GTAC	2 cut(s)	258, 347
DpnI	GATC	2 cut(s)	23, 125
DpnII	GATC	2 cut(s)	21, 123
EaeI	YGGCCR	1 cut(s)	25
EagI	CGGCCG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
EclXI	CGGCCG	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	253
Eco32I	GATATC	2 cut(s)	173, 394
Eco47I	GGWCC	2 cut(s)	431, 439
Eco52I	CGGCCG	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRV	GATATC	2 cut(s)	173, 394
EcoT38I	GRGCYC	1 cut(s)	253
FaiI	YATR	3 cut(s)	86, 134, 153
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	45, 265, 370
FokI	GGATG	2 cut(s)	129, 416
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	3 cut(s)	45, 265, 370
FspBI	CTAG	1 cut(s)	39
FspI	TGCGCA	1 cut(s)	160
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	3 cut(s)	45, 265, 370
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	3 cut(s)	28, 100, 207
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HpaII	CCGG	3 cut(s)	28, 100, 207
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	3 cut(s)	97, 212, 301
Hpy188I	TCNGA	2 cut(s)	80, 147
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	3 cut(s)	97, 212, 301
HpyAV	CCTTC	8 cut(s)	61, 75, 283, 311, 316, 328, 376, 421
HpyCH4V	TGCA	2 cut(s)	4, 97
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 148
HspAI	GCGC	1 cut(s)	159
KpnI	GGTACC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	21, 123
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	8 cut(s)	25, 41, 102, 113, 212, 220, 274, 363
Lsp1109I	GCAGC	2 cut(s)	31, 251
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	39
MalI	GATC	2 cut(s)	23, 125
MboI	GATC	2 cut(s)	21, 123
MboII	GAAGA	1 cut(s)	373
MhlI	GDGCHC	2 cut(s)	99, 253
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	6 cut(s)	28, 240, 287, 290, 334, 359
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	3 cut(s)	28, 100, 207
Mva1269I	GAATGC	1 cut(s)	194
MvnI	CGCG	2 cut(s)	61, 297
MwoI	GCNNNNNNNGC	2 cut(s)	44, 148
NdeII	GATC	2 cut(s)	21, 123
NlaIV	GGNNCC	3 cut(s)	205, 259, 432
NmeAIII	GCCGAG	2 cut(s)	206, 353
NsbI	TGCGCA	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	352
PctI	GAATGC	1 cut(s)	194
PinAI	ACCGGT	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	46, 266, 371
PpuMI	RGGWCCY	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	439
PspN4I	GGNNCC	3 cut(s)	205, 259, 432
PspPI	GGNCC	2 cut(s)	431, 439
PspPPI	RGGWCCY	1 cut(s)	439
RsaI	GTAC	2 cut(s)	259, 348
RsaNI	GTAC	2 cut(s)	258, 347
SatI	GCNGC	3 cut(s)	45, 265, 370
Sau3AI	GATC	2 cut(s)	21, 123
Sau96I	GGNCC	2 cut(s)	431, 439
ScaI	AGTACT	1 cut(s)	348
SduI	GDGCHC	2 cut(s)	99, 253
SetI	ASST	3 cut(s)	263, 345, 444
SfaNI	GCATC	1 cut(s)	151
SfuI	TTCGAA	1 cut(s)	352
SinI	GGWCC	2 cut(s)	431, 439
SsiI	CCGC	4 cut(s)	15, 59, 295, 369
SspMI	CTAG	1 cut(s)	39
TaqI	TCGA	2 cut(s)	122, 352
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	1 cut(s)	372
TseI	GCWGC	2 cut(s)	44, 264
TspGWI	ACGGA	1 cut(s)	318
VneI	GTGCAC	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	431, 439
XspI	CTAG	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.