Rorug05G0172700

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012665
Physical Location & Seq
Forward (+)
16117234 .. 16122150
4917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0172700.1

Sequence Viewer

Length: 975 bp
ATGACAGAATCAGATAAAAGGAAGAAAGGTTGTTGTCTCGTCTTTGCTCTACTCGATCACTCACTCAAGCTATCACTGTGTCAATTCAGCTCAGTGGCAGATATGGAATCATCAGCTTTGTTATACAATCAGCTCAAGACAGCAGAGCCGTTTTTCTTATTAGCGGGTCCGAATGTGATTGAATCCGAGGAGCACATTTTCCGGATGGCCAAGCACATAAAGACTATTGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGCGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTGAGAAGGTTAAAATAGCTTATGACCTCCCTATAGTTACAGATGTACACGAATCTATACAGTGCGAAGAAGTTGGCAAAGTTGCAGATATCATTCAGATTCCTGCATTTTTATGCCGTCAGACCGATCTTCTAGTTGCAGCAGCCAAGACTGGAAAGATTGTCAATATTAAGAAGGGTCAATTCTGTGCACCTTCTGTCATGGTAAATTCTGCTGAGAAGATTAGACTGGCAGGAAATCCAAATGTGATGGTTTGTGAGAGGGGAACTATGTTTGGTTATAATGATTTAATTGTTGATCCGCGTAATTTGGAGTGGATCAGAGAAGCTAATTGTCCTGTTGTTGCTGATGTTACACATGCATTGCAACAGCCTGCTGGGAGAAAGTTGGATGACGGAGGTGTTGCCAGTGGTGGTCTTCGTGAATTGATACCATGTATTGCAAGGACAGCAGTTGCTGTTGGGGTGGATGGAATTTTCATGGAGGTACATGATGATCCTTCTAATGCGCCAGTTGATGGTCCAACCCAATGGCCGTTGCGCCATTTGGAGGAACTACTGGTAGAGCTTATTGCAATTGCTAGGGTAAGCAAGGGGAAGCAACGCTTCAACATTGATCTCTCACCCTATCGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

324

Amino Acids

35.51

Weight (kDa)

7.03

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAHP_synth_1 PF00793 49 - 299 1.6e-65 DAHP synthetase I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
AccB7I CCANNNNNTGG 1 cut(s) 854
AccII CGCG 2 cut(s) 306, 640
AccIII TCCGGA 1 cut(s) 201
AciI CCGC 4 cut(s) 164, 304, 306, 638
AclWI GGATC 4 cut(s) 328, 629, 662, 827
AcoI YGGCCR 2 cut(s) 207, 869
AcsI RAATTY 2 cut(s) 544, 810
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 3 cut(s) 286, 384, 825
AfiI CCNNNNNNNGG 4 cut(s) 316, 343, 854, 886
AgsI TTSAA 3 cut(s) 182, 259, 946
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 9 cut(s) 70, 90, 116, 133, 267, 278, 356, 665, 904
AluI AGCT 9 cut(s) 70, 90, 116, 133, 267, 278, 356, 665, 904
Alw21I GWGCWC 2 cut(s) 195, 529
Alw26I GTCTC 1 cut(s) 41
Alw44I GTGCAC 1 cut(s) 525
AlwI GGATC 4 cut(s) 328, 629, 662, 827
AlwNI CAGNNNCTG 1 cut(s) 794
Aor13HI TCCGGA 1 cut(s) 201
AoxI GGCC 3 cut(s) 207, 307, 869
ApaLI GTGCAC 1 cut(s) 525
ApeKI GCWGC 2 cut(s) 476, 479
ApoI RAATTY 2 cut(s) 544, 810
AspLEI GCGC 2 cut(s) 847, 879
AspS9I GGNCC 3 cut(s) 167, 308, 857
AsuHPI GGTGA 1 cut(s) 951
AvaII GGWCC 2 cut(s) 167, 857
BaeGI GKGCMC 1 cut(s) 529
BalI TGGCCA 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 746
Bbv12I GWGCWC 2 cut(s) 195, 529
BbvI GCAGC 2 cut(s) 488, 491
BccI CCATC 4 cut(s) 199, 580, 800, 848
BceAI ACGGC 3 cut(s) 133, 438, 856
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 2 cut(s) 470, 918
BfmI CTRYAG 1 cut(s) 369
BisI GCNGC 3 cut(s) 307, 477, 480
BlsI GCNGC 3 cut(s) 308, 478, 481
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 2 cut(s) 167, 857
BmgT120I GGNCC 3 cut(s) 167, 308, 857
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 746
BpuEI CTTGAG 3 cut(s) 50, 119, 359
BsaJI CCNNGG 3 cut(s) 186, 304, 310
BsaWI WCCGGW 1 cut(s) 201
Bsc4I CCNNNNNNNGG 4 cut(s) 316, 343, 854, 886
Bse1I ACTGG 6 cut(s) 255, 493, 570, 744, 848, 900
Bse3DI GCAATG 1 cut(s) 698
BseAI TCCGGA 1 cut(s) 201
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 186, 304, 310
BseGI GGATG 4 cut(s) 210, 287, 733, 811
BseLI CCNNNNNNNGG 4 cut(s) 316, 343, 854, 886
BseMI GCAATG 1 cut(s) 698
BseMII CTCAG 2 cut(s) 105, 543
BseNI ACTGG 6 cut(s) 255, 493, 570, 744, 848, 900
BseRI GAGGAG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 529
BseXI GCAGC 2 cut(s) 488, 491
BseYI CCCAGC 1 cut(s) 713
Bsh1236I CGCG 2 cut(s) 306, 640
BshFI GGCC 3 cut(s) 209, 309, 871
BsiHKAI GWGCWC 2 cut(s) 195, 529
BsiSI CCGG 1 cut(s) 202
BslI CCNNNNNNNGG 4 cut(s) 316, 343, 854, 886
BsmAI GTCTC 1 cut(s) 41
BsnI GGCC 3 cut(s) 209, 309, 871
Bsp1286I GDGCHC 2 cut(s) 195, 529
Bsp13I TCCGGA 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 382
Bsp143I GATC 7 cut(s) 55, 333, 463, 634, 654, 832, 952
BspACI CCGC 4 cut(s) 164, 304, 306, 638
BspANI GGCC 3 cut(s) 209, 309, 871
BspCNI CTCAG 2 cut(s) 104, 544
BspEI TCCGGA 1 cut(s) 201
BspFNI CGCG 2 cut(s) 306, 640
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 4 cut(s) 328, 629, 662, 827
BsrDI GCAATG 1 cut(s) 698
BsrGI TGTACA 1 cut(s) 382
BsrI ACTGG 6 cut(s) 255, 493, 570, 744, 848, 900
BssECI CCNNGG 3 cut(s) 186, 304, 310
BssMI GATC 7 cut(s) 55, 333, 463, 634, 654, 832, 952
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 3 cut(s) 78, 284, 399
BstAUI TGTACA 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 711
BstDEI CTNAG 2 cut(s) 91, 552
BstDSI CCRYGG 1 cut(s) 304
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 4 cut(s) 210, 287, 733, 811
BstFNI CGCG 2 cut(s) 306, 640
BstHHI GCGC 2 cut(s) 847, 879
BstKTI GATC 7 cut(s) 58, 336, 466, 637, 657, 835, 955
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 7 cut(s) 55, 333, 463, 634, 654, 832, 952
BstMWI GCNNNNNNNGC 2 cut(s) 312, 785
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 369
BstSLI GKGCMC 1 cut(s) 529
BstUI CGCG 2 cut(s) 306, 640
BstV1I GCAGC 2 cut(s) 488, 491
BstV2I GAAGAC 1 cut(s) 746
BstX2I RGATCY 1 cut(s) 333
BstXI CCANNNNNNTGG 1 cut(s) 867
BstYI RGATCY 1 cut(s) 333
BsuRI GGCC 3 cut(s) 209, 309, 871
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 4 cut(s) 210, 287, 733, 811
BtsIMutI CAGTG 5 cut(s) 74, 99, 248, 404, 751
Cac8I GCNNGC 1 cut(s) 711
CaiI CAGNNNCTG 1 cut(s) 794
CfoI GCGC 2 cut(s) 847, 879
Cfr13I GGNCC 3 cut(s) 167, 308, 857
Cfr42I CCGCGG 1 cut(s) 307
Csp6I GTAC 3 cut(s) 285, 383, 824
CviAII CATG 6 cut(s) 316, 538, 695, 771, 817, 827
CviQI GTAC 3 cut(s) 285, 383, 824
DdeI CTNAG 2 cut(s) 91, 552
DpnI GATC 7 cut(s) 57, 335, 465, 636, 656, 834, 954
DpnII GATC 7 cut(s) 55, 333, 463, 634, 654, 832, 952
EaeI YGGCCR 2 cut(s) 207, 869
Eco32I GATATC 1 cut(s) 427
Eco47I GGWCC 2 cut(s) 167, 857
Eco57I CTGAAG 1 cut(s) 342
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 310
EcoRV GATATC 1 cut(s) 427
EcoT22I ATGCAT 1 cut(s) 700
FaeI CATG 6 cut(s) 319, 541, 698, 774, 820, 830
FalI AAGNNNNNCTT 4 cut(s) 251, 283, 926, 958
FatI CATG 6 cut(s) 315, 537, 694, 770, 816, 826
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 307, 477, 480
FokI GGATG 4 cut(s) 217, 274, 740, 818
Fsp4HI GCNGC 3 cut(s) 307, 477, 480
FspBI CTAG 2 cut(s) 470, 918
GlaI GCGC 2 cut(s) 846, 878
GluI GCNGC 3 cut(s) 307, 477, 480
GsaI CCCAGC 1 cut(s) 717
HaeIII GGCC 3 cut(s) 209, 309, 871
HapII CCGG 1 cut(s) 202
HhaI GCGC 2 cut(s) 847, 879
Hin1II CATG 6 cut(s) 319, 541, 698, 774, 820, 830
Hin6I GCGC 2 cut(s) 845, 877
HinP1I GCGC 2 cut(s) 845, 877
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 5 cut(s) 8, 107, 182, 389, 436
HpaII CCGG 1 cut(s) 202
HphI GGTGA 1 cut(s) 951
Hpy166II GTNNAC 2 cut(s) 385, 527
Hpy188I TCNGA 6 cut(s) 13, 171, 187, 435, 459, 659
Hpy188III TCNNGA 4 cut(s) 136, 202, 758, 968
Hpy8I GTNNAC 2 cut(s) 385, 527
HpyAV CCTTC 5 cut(s) 317, 337, 505, 540, 846
HpyCH4III ACNGT 3 cut(s) 78, 284, 399
HpyCH4V TGCA 8 cut(s) 422, 443, 476, 527, 698, 703, 779, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 312, 785
HpyF3I CTNAG 2 cut(s) 91, 552
Hsp92II CATG 6 cut(s) 319, 541, 698, 774, 820, 830
HspAI GCGC 2 cut(s) 845, 877
Kpn2I TCCGGA 1 cut(s) 201
KspI CCGCGG 1 cut(s) 307
Kzo9I GATC 7 cut(s) 55, 333, 463, 634, 654, 832, 952
LmnI GCTCC 1 cut(s) 190
Lsp1109I GCAGC 2 cut(s) 488, 491
MaeI CTAG 2 cut(s) 470, 918
MaeIII GTNAC 2 cut(s) 373, 688
MalI GATC 7 cut(s) 57, 335, 465, 636, 656, 834, 954
MboI GATC 7 cut(s) 55, 333, 463, 634, 654, 832, 952
MboII GAAGA 5 cut(s) 34, 416, 458, 568, 746
MfeI CAATTG 1 cut(s) 912
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 2 cut(s) 195, 529
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 9 cut(s) 83, 518, 544, 627, 643, 667, 761, 810, 912
MluNI TGGCCA 1 cut(s) 209
MmeI TCCRAC 3 cut(s) 220, 705, 884
MnlI CCTC 7 cut(s) 181, 301, 374, 591, 728, 814, 880
Mox20I TGGCCA 1 cut(s) 209
Mph1103I ATGCAT 1 cut(s) 700
MroI TCCGGA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 209
MseI TTAA 4 cut(s) 329, 348, 507, 626
MslI CAYNNNNRTG 1 cut(s) 448
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 312
MunI CAATTG 1 cut(s) 912
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 2 cut(s) 306, 640
MwoI GCNNNNNNNGC 2 cut(s) 312, 785
NdeII GATC 7 cut(s) 55, 333, 463, 634, 654, 832, 952
NlaIII CATG 6 cut(s) 319, 541, 698, 774, 820, 830
NlaIV GGNNCC 1 cut(s) 168
NsiI ATGCAT 1 cut(s) 700
NspI RCATGY 1 cut(s) 698
PfeI GAWTC 5 cut(s) 8, 107, 182, 389, 436
PflMI CCANNNNNTGG 1 cut(s) 854
PkrI GCNGC 3 cut(s) 308, 478, 481
PsiI TTATAA 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 713
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 3 cut(s) 167, 308, 857
PstNI CAGNNNCTG 1 cut(s) 794
PsuI RGATCY 1 cut(s) 333
RsaI GTAC 3 cut(s) 286, 384, 825
RsaNI GTAC 3 cut(s) 285, 383, 824
RseI CAYNNNNRTG 1 cut(s) 448
SacII CCGCGG 1 cut(s) 307
SaqAI TTAA 4 cut(s) 329, 348, 507, 626
SatI GCNGC 3 cut(s) 307, 477, 480
Sau3AI GATC 7 cut(s) 55, 333, 463, 634, 654, 832, 952
Sau96I GGNCC 3 cut(s) 167, 308, 857
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 2 cut(s) 195, 529
SfcI CTRYAG 1 cut(s) 369
Sfr303I CCGCGG 1 cut(s) 307
SgrBI CCGCGG 1 cut(s) 307
SinI GGWCC 2 cut(s) 167, 857
SmiMI CAYNNNNRTG 1 cut(s) 448
SmlI CTYRAG 3 cut(s) 65, 134, 338
SmoI CTYRAG 3 cut(s) 65, 134, 338
Sse9I AATT 9 cut(s) 83, 518, 544, 627, 643, 667, 761, 810, 912
SsiI CCGC 4 cut(s) 164, 304, 306, 638
SspI AATATT 1 cut(s) 505
SspMI CTAG 2 cut(s) 470, 918
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 3 cut(s) 78, 284, 399
TaqI TCGA 1 cut(s) 54
TaqII GACCGA 1 cut(s) 476
TasI AATT 9 cut(s) 83, 518, 544, 627, 643, 667, 761, 810, 912
TatI WGTACW 1 cut(s) 382
TauI GCSGC 1 cut(s) 309
TfiI GAWTC 5 cut(s) 8, 107, 182, 389, 436
Tru1I TTAA 4 cut(s) 329, 348, 507, 626
Tru9I TTAA 4 cut(s) 329, 348, 507, 626
TscAI CASTG 5 cut(s) 81, 99, 255, 404, 751
TseI GCWGC 2 cut(s) 476, 479
TspDTI ATGAA 1 cut(s) 805
TspGWI ACGGA 1 cut(s) 747
TspRI CASTG 5 cut(s) 81, 99, 255, 404, 751
Van91I CCANNNNNTGG 1 cut(s) 854
VneI GTGCAC 1 cut(s) 525
VpaK11BI GGWCC 2 cut(s) 167, 857
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 2 cut(s) 544, 810
XceI RCATGY 1 cut(s) 698
XspI CTAG 2 cut(s) 470, 918
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.