Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0012665

Physical Location & Seq

Genomic Coordinates Reverse (-)

8953224 .. 8955800

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG059400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTCCTTAACCTCTTCACTCTCTGAGCCCCGCCACCACCTCCGCACAAAGCTCCAAAACAAACCACCTCCAATCCGTAAAGACACCCTAGACTTCCCCCTCACAGAAAGCATCTACATACCCTCACAGGACTGGTCGCCATCCTCATTTACATCATTGGAGTCTCCAATCTCTGTTAGTGAGATATTGGATTCAGAGTTATTAGGTGAAGGGTTGATACCTTCTCTGCAACATGCACATGACATATTGTTGGTGGAGAGTCCTGAAATGGTGTCATATAGAGCAACCACTTACGGTCAGTTGGTTGAGAGCACATTTTTGTGGAAGCTTCGTGATTTACGCAGTAATAAGGCAGAAGTGAGTGATGGGATTCATCTTGTTCTGACTGGGTTTGAGGACGTTTTAGGTGTTAAGCCGCAACAATATGCGTTTCATTGTGATGCTATAGCAGATGAAGTGAAACTGGACCATCATGTGTGTGCTGCTGCTCGAAAGGACGGCAAAACGGTTGTCACGGCTTTGTGGCTTCATCATAGTTTTGATGTTGGACTGCCCCTTGATGCTGCTGCTACAATGGTTGGTTTAATGGGTGCTCAGTTTTCTAAACCATTGGTGGCAAGCAAAGTCACTCATCTCATTTGCTATAAATTTGAAGGTGCTCCTCTTAAGTATCTGTTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019918 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035241 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PrmA

Protein Analysis

227

Amino Acids

25.15

Weight (kDa)

5.85

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0012665)

Species	Orthologous Gene IDs
malus_domestica	MD11G1233500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0497351 RchiOBHm_Chr5g0036631
rosa_laevigata	RLG00000000377 RLG00000003078 RLG00000035111 RLG00000035829
rosa_roxburghii	Rroxscaffold_3G00234550
rosa_rugosa	Rorug02G0167100 Rorug02G0167200 Rorug02G0444700 Rorug05G0172700 Rorug05G0260600 Rorug07G0123400
rosa_samantha	Rh1DG464600 Rh3AG336000 Rh3BG239800 Rh4BG001500 Rh6AG059400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	31, 43, 416
AcsI	RAATTY	1 cut(s)	647
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	1 cut(s)	653
AluBI	AGCT	2 cut(s)	52, 328
AluI	AGCT	2 cut(s)	52, 328
Alw21I	GWGCWC	3 cut(s)	314, 595, 661
Alw26I	GTCTC	1 cut(s)	168
ApeKI	GCWGC	4 cut(s)	482, 485, 563, 566
ApoI	RAATTY	1 cut(s)	647
ArsI	GACNNNNNNTTYG	2 cut(s)	495, 527
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	30
BarI	GAAGNNNNNNTAC	2 cut(s)	201, 233
Bbv12I	GWGCWC	3 cut(s)	314, 595, 661
BbvI	GCAGC	4 cut(s)	469, 472, 550, 553
BccI	CCATC	3 cut(s)	148, 359, 477
BceAI	ACGGC	2 cut(s)	514, 531
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	444
BfrI	CTTAAG	1 cut(s)	665
BisI	GCNGC	5 cut(s)	416, 483, 486, 564, 567
BlsI	GCNGC	5 cut(s)	417, 484, 487, 565, 568
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	466
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	3 cut(s)	120, 430, 550
BmuI	ACTGGG	1 cut(s)	396
Bse1I	ACTGG	3 cut(s)	137, 391, 468
BseGI	GGATG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	15, 608
BseNI	ACTGG	3 cut(s)	137, 391, 468
BseRI	GAGGAG	1 cut(s)	651
BseXI	GCAGC	4 cut(s)	469, 472, 550, 553
BsiHKAI	GWGCWC	3 cut(s)	314, 595, 661
BsmAI	GTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	4 cut(s)	30, 314, 595, 661
BspACI	CCGC	3 cut(s)	31, 43, 416
BspCNI	CTCAG	2 cut(s)	16, 607
BspTI	CTTAAG	1 cut(s)	665
BsrI	ACTGG	3 cut(s)	137, 391, 468
Bst4CI	ACNGT	2 cut(s)	296, 508
Bst6I	CTCTTC	1 cut(s)	19
BstAFI	CTTAAG	1 cut(s)	665
BstC8I	GCNNGC	1 cut(s)	619
BstDEI	CTNAG	2 cut(s)	24, 594
BstF5I	GGATG	1 cut(s)	140
BstMAI	GTCTC	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	4 cut(s)	469, 472, 550, 553
BtsCI	GGATG	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	619
Cfr13I	GGNCC	1 cut(s)	466
CviAII	CATG	3 cut(s)	233, 239, 473
CviJI	RGCY	6 cut(s)	28, 52, 328, 415, 518, 526
CviKI_1	RGCY	6 cut(s)	28, 52, 328, 415, 518, 526
DdeI	CTNAG	2 cut(s)	24, 594
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	3 cut(s)	236, 242, 476
FatI	CATG	3 cut(s)	232, 238, 472
FauI	CCCGC	1 cut(s)	38
Fnu4HI	GCNGC	5 cut(s)	416, 483, 486, 564, 567
FokI	GGATG	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	5 cut(s)	416, 483, 486, 564, 567
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	5 cut(s)	416, 483, 486, 564, 567
Hin1II	CATG	3 cut(s)	236, 242, 476
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	4 cut(s)	161, 191, 259, 370
HphI	GGTGA	1 cut(s)	218
Hpy188I	TCNGA	3 cut(s)	25, 196, 384
Hpy188III	TCNNGA	2 cut(s)	263, 332
HpyAV	CCTTC	3 cut(s)	203, 231, 647
HpyCH4III	ACNGT	2 cut(s)	296, 508
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	2 cut(s)	229, 236
HpyF3I	CTNAG	2 cut(s)	24, 594
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	236, 242, 476
LmnI	GCTCC	2 cut(s)	57, 664
LpnPI	CCDG	5 cut(s)	113, 118, 276, 372, 449
Lsp1109I	GCAGC	4 cut(s)	469, 472, 550, 553
LweI	GCATC	3 cut(s)	120, 430, 550
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	511, 625
MboII	GAAGA	1 cut(s)	6
MhlI	GDGCHC	4 cut(s)	30, 314, 595, 661
MluCI	AATT	1 cut(s)	647
MlyI	GAGTC	2 cut(s)	170, 268
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	8 cut(s)	22, 50, 78, 110, 133, 154, 388, 672
MseI	TTAA	4 cut(s)	8, 411, 584, 666
MslI	CAYNNNNRTG	4 cut(s)	237, 319, 438, 477
MspCI	CTTAAG	1 cut(s)	665
NlaIII	CATG	3 cut(s)	236, 242, 476
NmuCI	GTSAC	2 cut(s)	511, 625
NspI	RCATGY	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	191, 370
PkrI	GCNGC	5 cut(s)	417, 484, 487, 565, 568
PleI	GAGTC	2 cut(s)	169, 267
PpsI	GAGTC	2 cut(s)	169, 267
PspPI	GGNCC	1 cut(s)	466
RseI	CAYNNNNRTG	4 cut(s)	237, 319, 438, 477
SaqAI	TTAA	4 cut(s)	8, 411, 584, 666
SatI	GCNGC	5 cut(s)	416, 483, 486, 564, 567
Sau96I	GGNCC	1 cut(s)	466
SchI	GAGTC	2 cut(s)	170, 268
SduI	GDGCHC	4 cut(s)	30, 314, 595, 661
SfaNI	GCATC	3 cut(s)	120, 430, 550
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	4 cut(s)	237, 319, 438, 477
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
Sse9I	AATT	1 cut(s)	647
SsiI	CCGC	3 cut(s)	31, 43, 416
SspMI	CTAG	1 cut(s)	89
TaaI	ACNGT	2 cut(s)	296, 508
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	1 cut(s)	490
TasI	AATT	1 cut(s)	647
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	2 cut(s)	191, 370
Tru1I	TTAA	4 cut(s)	8, 411, 584, 666
Tru9I	TTAA	4 cut(s)	8, 411, 584, 666
TseFI	GTSAC	2 cut(s)	511, 625
TseI	GCWGC	4 cut(s)	482, 485, 563, 566
Tsp45I	GTSAC	2 cut(s)	511, 625
TspDTI	ATGAA	5 cut(s)	362, 422, 468, 518, 669
TspGWI	ACGGA	1 cut(s)	65
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	1 cut(s)	236
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.