Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012665

Physical Location & Seq

Genomic Coordinates Reverse (-)

44142639 .. 44144492

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003078

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTGTCGTATAGAGCAACCACTTACGGTCAGTTGGTTGAGAGCACATTTTTGTGGAAGCTTCATGATTTACGCAGTAATAAGGCAGAAGTGAGGGATGGGATTCGTCTTGTTCTGACCGGGTTTGAGCACGTTTTGGGTGTTAAGCCGCAACAATATGCGCTTCATTGTGTTGCTATAGTAGATGAAGTGAAACTGCCACAGAGTCGTGGAGAAACTAAGCTATCTATAAAGGCGACTAATGAGGGTCGAGTTCATGCTGACCATCCTATGTGTGCTGCTGCTCGAAAGGATGGCAAAACGGTTGTCACGGCTTTGTGGGTTCATCATAGTTTTGATGTTGGACTGCCCCTTGATGCTGCCGCTATTATATACAGACCTCTCAAACATTTGAATGGTATTCCCAGTGCTAAGAATTTATTAATGTGCTTGACTAGATATCAAGGACAAGACAGAGATGACATTATGACAATGGTTGGTTTAATGGGTGCTCAGTTTTCTAAACCATTGGTGGCAAGCAAAGTCACTCCTCTCAGTTGCTATAAATTTGAAGGTGCTCCTCTTAAGTATCTGTTTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

BRCT PHD PTCB-BRCT

Protein Analysis

194

Amino Acids

21.45

Weight (kDa)

9.28

Isoelectric Point (pI)

16.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012665)

Species	Orthologous Gene IDs
malus_domestica	MD11G1233500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0497351 RchiOBHm_Chr5g0036631
rosa_laevigata	RLG00000000377 RLG00000003078 RLG00000035111 RLG00000035829
rosa_roxburghii	Rroxscaffold_3G00234550
rosa_rugosa	Rorug02G0167100 Rorug02G0167200 Rorug02G0444700 Rorug05G0172700 Rorug05G0260600 Rorug07G0123400
rosa_samantha	Rh1DG464600 Rh3AG336000 Rh3BG239800 Rh4BG001500 Rh6AG059400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	149, 363
AcsI	RAATTY	2 cut(s)	415, 545
AflII	CTTAAG	1 cut(s)	563
AgsI	TTSAA	2 cut(s)	394, 551
AluBI	AGCT	2 cut(s)	61, 223
AluI	AGCT	2 cut(s)	61, 223
Alw21I	GWGCWC	4 cut(s)	47, 132, 493, 559
ApeKI	GCWGC	3 cut(s)	278, 281, 359
ApoI	RAATTY	2 cut(s)	415, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
AseI	ATTAAT	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	121
Bbv12I	GWGCWC	4 cut(s)	47, 132, 493, 559
BbvI	GCAGC	3 cut(s)	265, 268, 346
BccI	CCATC	3 cut(s)	92, 273, 287
BceAI	ACGGC	1 cut(s)	327
BcnI	CCSGG	1 cut(s)	121
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	177
BfrI	CTTAAG	1 cut(s)	563
BisI	GCNGC	5 cut(s)	149, 279, 282, 360, 363
BlsI	GCNGC	5 cut(s)	150, 280, 283, 361, 364
Bme1390I	CCNGG	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	405
BseGI	GGATG	3 cut(s)	103, 265, 298
BseMII	CTCAG	2 cut(s)	506, 547
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	2 cut(s)	519, 549
BseXI	GCAGC	3 cut(s)	265, 268, 346
BsiHKAI	GWGCWC	4 cut(s)	47, 132, 493, 559
BsiSI	CCGG	1 cut(s)	120
Bsp1286I	GDGCHC	4 cut(s)	47, 132, 493, 559
BspACI	CCGC	2 cut(s)	149, 363
BspCNI	CTCAG	2 cut(s)	505, 546
BspHI	TCATGA	1 cut(s)	64
BspTI	CTTAAG	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	29, 304
BstAFI	CTTAAG	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	517
BstDEI	CTNAG	4 cut(s)	219, 411, 492, 533
BstF5I	GGATG	3 cut(s)	103, 265, 298
BstHHI	GCGC	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	119
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	265, 268, 346
BtsCI	GGATG	3 cut(s)	103, 265, 298
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	517
CciI	TCATGA	1 cut(s)	64
CfoI	GCGC	1 cut(s)	163
CviAII	CATG	2 cut(s)	65, 257
CviJI	RGCY	4 cut(s)	61, 148, 223, 314
CviKI_1	RGCY	4 cut(s)	61, 148, 223, 314
DdeI	CTNAG	4 cut(s)	219, 411, 492, 533
Eco32I	GATATC	1 cut(s)	440
EcoRV	GATATC	1 cut(s)	440
FaeI	CATG	2 cut(s)	68, 260
FatI	CATG	2 cut(s)	64, 256
Fnu4HI	GCNGC	5 cut(s)	149, 279, 282, 360, 363
FokI	GGATG	3 cut(s)	110, 252, 305
Fsp4HI	GCNGC	5 cut(s)	149, 279, 282, 360, 363
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	5 cut(s)	149, 279, 282, 360, 363
HapII	CCGG	1 cut(s)	120
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	68, 260
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	2 cut(s)	103, 205
HpaII	CCGG	1 cut(s)	120
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	545
HpyCH4III	ACNGT	2 cut(s)	29, 304
HpyCH4IV	ACGT	1 cut(s)	132
HpyF3I	CTNAG	4 cut(s)	219, 411, 492, 533
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	68, 260
HspAI	GCGC	1 cut(s)	161
LmnI	GCTCC	1 cut(s)	562
LpnPI	CCDG	2 cut(s)	133, 418
Lsp1109I	GCAGC	3 cut(s)	265, 268, 346
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	307, 523
MhlI	GDGCHC	4 cut(s)	47, 132, 493, 559
MluCI	AATT	2 cut(s)	415, 545
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	5 cut(s)	87, 238, 390, 540, 570
MseI	TTAA	4 cut(s)	144, 422, 482, 564
MslI	CAYNNNNRTG	2 cut(s)	52, 393
MspCI	CTTAAG	1 cut(s)	563
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	121
NciI	CCSGG	1 cut(s)	121
NlaIII	CATG	2 cut(s)	68, 260
NmuCI	GTSAC	2 cut(s)	307, 523
PagI	TCATGA	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	5 cut(s)	150, 280, 283, 361, 364
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	422
RseI	CAYNNNNRTG	2 cut(s)	52, 393
SaqAI	TTAA	4 cut(s)	144, 422, 482, 564
SatI	GCNGC	5 cut(s)	149, 279, 282, 360, 363
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	4 cut(s)	47, 132, 493, 559
SetI	ASST	5 cut(s)	63, 135, 225, 382, 556
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	177
SmiMI	CAYNNNNRTG	2 cut(s)	52, 393
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	2 cut(s)	415, 545
SsiI	CCGC	2 cut(s)	149, 363
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	29, 304
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	250, 286
TasI	AATT	2 cut(s)	415, 545
TauI	GCSGC	2 cut(s)	151, 365
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	4 cut(s)	144, 422, 482, 564
Tru9I	TTAA	4 cut(s)	144, 422, 482, 564
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	2 cut(s)	307, 523
TseI	GCWGC	3 cut(s)	278, 281, 359
Tsp45I	GTSAC	2 cut(s)	307, 523
TspDTI	ATGAA	5 cut(s)	53, 155, 201, 245, 314
TspRI	CASTG	1 cut(s)	412
Vha464I	CTTAAG	1 cut(s)	563
VspI	ATTAAT	1 cut(s)	422
XapI	RAATTY	2 cut(s)	415, 545
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.