Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0012665

Physical Location & Seq

Genomic Coordinates Reverse (-)

48912765 .. 48946018

Gene Structure 33254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG336000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTCGAGTTCCCGGTTGTGCATCCTCCTTGGAGTTATCAATTGTCTGGTGCTTAGGACAGGGATTACTGAAGAATCTCACGAACATCAAAATAACGCTCTGTTTACAGATGGTAATGAGGATGGTATTCGAGAAACCACGCCTCTATACTCTGCCCTCATCATAGGTCACAAGATCCCTACTCCAAGGAGAAGCCGTAGCCTCCATCTTCCATCAAATCATCTTCCATCATCCTGTCGTACTCCTGCTTTGAAGACGCCTCAAGCTTTCTTGAACAATAATCAAAGTGAGATTGTGATATCTACTACCCTCTACGAGTTATTAGGTGAAGGGTTGATACCTTCTCTGCAACATGCGCATGACATATTGTTGGTGGAGAGTCCTGAAATGGTGTCGTATAGAGCAACCACTTACGGTCAGTTGGTTGAAAGCACATTTTTGTGGAAGCTTCGTGATTTACGCAGTAATAAGGCAGAAGTGAATGATGGGATTCATCTTGTTCTGACCGGGTTTGAGGACGTTTTGTGTGTTAAGCCGCAACAATATGTGTTTCATTGTGATGCTATAGCAGATGAAGTGAAACTGCTGTCAGAACCCTTCAAGATCTTTGAATTTGATTTTTCGAAACTGCCACAGAGTCGTGGAGAAACTGAGCTATCTATAAAGGCGACTAATGAGGTTCGAGTTCATGCTATTATATACAGACCTCTCAAACATTTGAATGGTATTCTCGGTGCCAAGAATTTATTAATGTGCTTGACTGGATATCAAGGACAAGATAGAGATGACATTATGACAATAGTTGGTTTAATAGGTGCTCAGTTTTCTAAACCATTGGTGGCAAGCAAAGTCACTCATCTCATTTGCTATAAATTTGAAGTGATCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019918 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035241 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PrmA

Protein Analysis

296

Amino Acids

33.15

Weight (kDa)

6.46

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTCB-BRCT	PF12738	249 - 293	5.2e-09	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012665)

Species	Orthologous Gene IDs
malus_domestica	MD11G1233500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0497351 RchiOBHm_Chr5g0036631
rosa_laevigata	RLG00000000377 RLG00000003078 RLG00000035111 RLG00000035829
rosa_roxburghii	Rroxscaffold_3G00234550
rosa_rugosa	Rorug02G0167100 Rorug02G0167200 Rorug02G0444700 Rorug05G0172700 Rorug05G0260600 Rorug07G0123400
rosa_samantha	Rh1DG464600 Rh3AG336000 Rh3BG239800 Rh4BG001500 Rh6AG059400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	357
AccB1I	GGYRCC	1 cut(s)	734
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	1 cut(s)	169
AcsI	RAATTY	3 cut(s)	611, 742, 872
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	257
AfaI	GTAC	1 cut(s)	241
AgsI	TTSAA	7 cut(s)	253, 274, 428, 601, 611, 721, 878
AluBI	AGCT	3 cut(s)	266, 448, 655
AluI	AGCT	3 cut(s)	266, 448, 655
Alw21I	GWGCWC	1 cut(s)	820
AlwI	GGATC	1 cut(s)	169
ApoI	RAATTY	3 cut(s)	611, 742, 872
AseI	ATTAAT	1 cut(s)	749
AspLEI	GCGC	1 cut(s)	358
AsuC2I	CCSGG	2 cut(s)	13, 508
AsuHPI	GGTGA	1 cut(s)	338
AsuII	TTCGAA	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	734
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	820
BccI	CCATC	6 cut(s)	104, 116, 213, 220, 235, 479
BceAI	ACGGC	1 cut(s)	180
BclI	TGATCA	1 cut(s)	882
BcnI	CCSGG	2 cut(s)	13, 508
BfmI	CTRYAG	1 cut(s)	564
BglII	AGATCT	1 cut(s)	603
BisI	GCNGC	1 cut(s)	536
BlsI	GCNGC	1 cut(s)	537
Bme1390I	CCNGG	2 cut(s)	13, 508
BmiI	GGNNCC	1 cut(s)	736
BmrFI	CCNGG	2 cut(s)	13, 508
BmsI	GCATC	2 cut(s)	30, 550
BpiI	GAAGAC	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	623
BpuEI	CTTGAG	1 cut(s)	246
BpuMI	CCSGG	2 cut(s)	13, 508
BsaHI	GRCGYC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	28, 185
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bse1I	ACTGG	1 cut(s)	766
BseDI	CCNNGG	2 cut(s)	28, 185
BseGI	GGATG	3 cut(s)	21, 127, 230
BseMII	CTCAG	2 cut(s)	642, 833
BseNI	ACTGG	1 cut(s)	766
BshNI	GGYRCC	1 cut(s)	734
BsiHKAI	GWGCWC	1 cut(s)	820
BsiSI	CCGG	2 cut(s)	13, 507
Bsp119I	TTCGAA	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	820
Bsp143I	GATC	3 cut(s)	174, 603, 882
BspACI	CCGC	1 cut(s)	536
BspCNI	CTCAG	2 cut(s)	643, 832
BspLI	GGNNCC	1 cut(s)	736
BspPI	GGATC	1 cut(s)	169
BspT104I	TTCGAA	1 cut(s)	623
BspT107I	GGYRCC	1 cut(s)	734
BsrI	ACTGG	1 cut(s)	766
BssECI	CCNNGG	2 cut(s)	28, 185
BssMI	GATC	3 cut(s)	174, 603, 882
BssNI	GRCGYC	1 cut(s)	257
BssT1I	CCWWGG	2 cut(s)	28, 185
Bst4CI	ACNGT	1 cut(s)	416
BstACI	GRCGYC	1 cut(s)	257
BstBI	TTCGAA	1 cut(s)	623
BstC8I	GCNNGC	1 cut(s)	844
BstDEI	CTNAG	3 cut(s)	53, 651, 819
BstF5I	GGATG	3 cut(s)	21, 127, 230
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	3 cut(s)	177, 606, 885
BstMBI	GATC	3 cut(s)	174, 603, 882
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	2 cut(s)	11, 506
BstSFI	CTRYAG	1 cut(s)	564
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	2 cut(s)	174, 603
BstYI	RGATCY	2 cut(s)	174, 603
BtsCI	GGATG	3 cut(s)	21, 127, 230
Cac8I	GCNNGC	1 cut(s)	844
CfoI	GCGC	1 cut(s)	358
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	3 cut(s)	353, 359, 689
CviJI	RGCY	6 cut(s)	195, 201, 266, 448, 535, 655
CviKI_1	RGCY	6 cut(s)	195, 201, 266, 448, 535, 655
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	3 cut(s)	53, 651, 819
DpnI	GATC	3 cut(s)	176, 605, 884
DpnII	GATC	3 cut(s)	174, 603, 882
Eco130I	CCWWGG	2 cut(s)	28, 185
Eco32I	GATATC	2 cut(s)	300, 767
Eco57I	CTGAAG	1 cut(s)	90
EcoRV	GATATC	2 cut(s)	300, 767
EcoT14I	CCWWGG	2 cut(s)	28, 185
ErhI	CCWWGG	2 cut(s)	28, 185
FaeI	CATG	3 cut(s)	356, 362, 692
FatI	CATG	3 cut(s)	352, 358, 688
FbaI	TGATCA	1 cut(s)	882
Fnu4HI	GCNGC	1 cut(s)	536
FokI	GGATG	3 cut(s)	8, 134, 217
Fsp4HI	GCNGC	1 cut(s)	536
FspAI	RTGCGCAY	1 cut(s)	357
FspI	TGCGCA	1 cut(s)	357
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	536
HapII	CCGG	2 cut(s)	13, 507
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	3 cut(s)	356, 362, 692
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HindIII	AAGCTT	2 cut(s)	264, 446
HinfI	GANTC	4 cut(s)	74, 379, 490, 637
HpaII	CCGG	2 cut(s)	13, 507
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	2 cut(s)	504, 592
Hpy188III	TCNNGA	6 cut(s)	80, 131, 271, 383, 452, 601
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	3 cut(s)	323, 351, 607
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	2 cut(s)	21, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	3 cut(s)	53, 651, 819
HpySE526I	ACGT	1 cut(s)	519
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	3 cut(s)	356, 362, 692
HspAI	GCGC	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	882
Kzo9I	GATC	3 cut(s)	174, 603, 882
LpnPI	CCDG	8 cut(s)	26, 32, 45, 247, 258, 396, 520, 747
LweI	GCATC	2 cut(s)	30, 550
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	2 cut(s)	167, 850
MalI	GATC	3 cut(s)	176, 605, 884
MboI	GATC	3 cut(s)	174, 603, 882
MboII	GAAGA	4 cut(s)	83, 200, 215, 265
MfeI	CAATTG	1 cut(s)	40
MflI	RGATCY	2 cut(s)	174, 603
MhlI	GDGCHC	1 cut(s)	820
MluCI	AATT	4 cut(s)	40, 611, 742, 872
MlyI	GAGTC	2 cut(s)	388, 646
MseI	TTAA	3 cut(s)	531, 749, 809
MslI	CAYNNNNRTG	4 cut(s)	357, 439, 558, 720
MspI	CCGG	2 cut(s)	13, 507
MspR9I	CCNGG	2 cut(s)	13, 508
MunI	CAATTG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	355
NciI	CCSGG	2 cut(s)	13, 508
NdeII	GATC	3 cut(s)	174, 603, 882
NlaIII	CATG	3 cut(s)	356, 362, 692
NlaIV	GGNNCC	1 cut(s)	736
NmuCI	GTSAC	2 cut(s)	167, 850
NsbI	TGCGCA	1 cut(s)	357
NspI	RCATGY	1 cut(s)	356
NspV	TTCGAA	1 cut(s)	623
PfeI	GAWTC	2 cut(s)	74, 490
PkrI	GCNGC	1 cut(s)	537
PleI	GAGTC	2 cut(s)	387, 645
PpsI	GAGTC	2 cut(s)	387, 645
PshBI	ATTAAT	1 cut(s)	749
PspN4I	GGNNCC	1 cut(s)	736
PsuI	RGATCY	2 cut(s)	174, 603
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
RseI	CAYNNNNRTG	4 cut(s)	357, 439, 558, 720
SaqAI	TTAA	3 cut(s)	531, 749, 809
SatI	GCNGC	1 cut(s)	536
Sau3AI	GATC	3 cut(s)	174, 603, 882
SchI	GAGTC	2 cut(s)	388, 646
ScrFI	CCNGG	2 cut(s)	13, 508
SduI	GDGCHC	1 cut(s)	820
SfaNI	GCATC	2 cut(s)	30, 550
SfcI	CTRYAG	1 cut(s)	564
SfuI	TTCGAA	1 cut(s)	623
SmiMI	CAYNNNNRTG	4 cut(s)	357, 439, 558, 720
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	4 cut(s)	40, 611, 742, 872
SsiI	CCGC	1 cut(s)	536
StyD4I	CCNGG	2 cut(s)	11, 506
StyI	CCWWGG	2 cut(s)	28, 185
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	4 cut(s)	5, 130, 623, 682
TasI	AATT	4 cut(s)	40, 611, 742, 872
TauI	GCSGC	1 cut(s)	538
TfiI	GAWTC	2 cut(s)	74, 490
Tru1I	TTAA	3 cut(s)	531, 749, 809
Tru9I	TTAA	3 cut(s)	531, 749, 809
TseFI	GTSAC	2 cut(s)	167, 850
Tsp45I	GTSAC	2 cut(s)	167, 850
TspDTI	ATGAA	4 cut(s)	482, 542, 588, 677
VspI	ATTAAT	1 cut(s)	749
XapI	RAATTY	3 cut(s)	611, 742, 872
XceI	RCATGY	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.