Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006040

Physical Location & Seq

Genomic Coordinates Reverse (-)

41342953 .. 41344486

Gene Structure 1534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1294900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCATGATTACTTAACATGGGGATTCACTGCAAATACTAGCTTGGCTCATTATTGCCGAGATAATGGTTTACTTCTTCACATCCACTGTGCAATGCATGCAGTTATCGATAGACAGAAGAATCATGGTATACACTTTCGTGTACGAGCTAAAGCGTTACGTAAATTTGAAGGGGAAAGAGAGATTACTTTAGGCTTTGTTGATTTACTACGTGATGATTTTGTTGAAAAAGATCGAAGCCGCTGTATTTATTTCACTCAAGATTGGGTCTCTCTGCCAAGTGTTTTGCCTGTGGCTTCAGGGGGTATTCACGTTTGGCATATGCCTGCTCTGATCGAGATCTTTGGAGATGATTCTGTACTACAATTTGGTGGCGGAACTTTAGGACACCCTTGGGGAAATGCACTTGGTGCCGCTAGTAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAATATGGAAGGAGATCAAATTCGAATTCGAAGCAATGGATACTTTGGGCAAGAAAAGTTCTATGGAAAAATGGTGGTTCGATTCGATGTTGTTTAACGAGGAGTTAGAATACAGGTGTAGGCTAAGTAAATCAATGGACAGTCTTGGTCCTTTTGAAAATACCAGTGTAAGTGAAGATCCAATTTTAAATGATATGGATAAAGACATTTTTAATTTTAGTGACAAGTCTAATTACAGTAATGTTGATCATTTAGTCGGCGACAGATACATTCAGAATTTCATAACTGATGACACTTTTTTCGTAAGGGATAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00630 ko00640 ko00710 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00630 map00640 map00710 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

RuBisCO_large RuBisCO_large_N

Protein Analysis

257

Amino Acids

29.46

Weight (kDa)

5.33

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuBisCO_large	PF00016	1 - 141	1.7e-47	Ribulose bisphosphate carboxylase large chain, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00490
malus_domestica	MD02G1049600.v1.1 MD11G1294900.v1.1 MD11G1295000.v1.1
prunus_persica	Prupe.7G029600_v2.0.a1
pyrus_communis	pycom08g13270 pycom12397g00250
rosa_chinensis	RchiOBHm_Chr5g0043011 RchiOBHm_CPg0502111
rosa_laevigata	RLG00000000069 RLG00000000106 RLG00000000163 RLG00000000221 RLG00000000257 RLG00000000267 RLG00000000290 RLG00000000329 RLG00000000350 RLG00000037105
rosa_roxburghii	Rroxscaffold_2G00087120 Rroxscaffold_3G00220720
rosa_rugosa	RorugMtG0002400.1
rosa_samantha	Rh2AG282300 Rh2BG293600 Rh2DG288500 Rh5BG295000 Rh5DG304800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	130
AciI	CCGC	3 cut(s)	241, 375, 414
AclWI	GGATC	1 cut(s)	623
AcsI	RAATTY	4 cut(s)	164, 470, 476, 727
AcuI	CTGAAG	1 cut(s)	282
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	2 cut(s)	144, 360
AgsI	TTSAA	3 cut(s)	170, 227, 608
AleI	CACNNNNGTG	1 cut(s)	138
AluBI	AGCT	3 cut(s)	42, 149, 440
AluI	AGCT	3 cut(s)	42, 149, 440
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	623
ApeKI	GCWGC	2 cut(s)	440, 443
ApoI	RAATTY	4 cut(s)	164, 470, 476, 727
ArsI	GACNNNNNNTTYG	2 cut(s)	734, 766
AspS9I	GGNCC	1 cut(s)	599
AsuII	TTCGAA	2 cut(s)	474, 480
AvaII	GGWCC	1 cut(s)	599
BanI	GGYRCC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	427, 430
BciVI	GTATCC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	697
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	3 cut(s)	39, 417, 437
BfuI	GTATCC	1 cut(s)	484
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	4 cut(s)	241, 414, 441, 444
BlsI	GCNGC	4 cut(s)	242, 415, 442, 445
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	412
Bpu14I	TTCGAA	2 cut(s)	474, 480
BpuEI	CTTGAG	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	108
BsaAI	YACGTR	2 cut(s)	161, 212
BsaBI	GATNNNNATC	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	615
Bse3DI	GCAATG	2 cut(s)	99, 492
Bse8I	GATNNNNATC	1 cut(s)	338
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	81
BseJI	GATNNNNATC	1 cut(s)	338
BseMI	GCAATG	2 cut(s)	99, 492
BseNI	ACTGG	1 cut(s)	615
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	427, 430
BshNI	GGYRCC	1 cut(s)	410
BshVI	ATCGAT	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	274
Bso31I	GGTCTC	1 cut(s)	274
Bsp119I	TTCGAA	2 cut(s)	474, 480
Bsp143I	GATC	6 cut(s)	232, 333, 339, 465, 628, 697
BspACI	CCGC	3 cut(s)	241, 375, 414
BspDI	ATCGAT	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	412
BspPI	GGATC	1 cut(s)	623
BspT104I	TTCGAA	2 cut(s)	474, 480
BspT107I	GGYRCC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	274
BsrDI	GCAATG	2 cut(s)	99, 492
BsrI	ACTGG	1 cut(s)	615
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	6 cut(s)	232, 333, 339, 465, 628, 697
BssNAI	GTATAC	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	392
Bst1107I	GTATAC	1 cut(s)	131
Bst4CI	ACNGT	3 cut(s)	89, 593, 689
BstAPI	GCANNNNNTGC	2 cut(s)	98, 410
BstBAI	YACGTR	2 cut(s)	161, 212
BstBI	TTCGAA	2 cut(s)	474, 480
BstC8I	GCNNGC	2 cut(s)	99, 327
BstDEI	CTNAG	1 cut(s)	575
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	6 cut(s)	235, 336, 342, 468, 631, 700
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	6 cut(s)	232, 333, 339, 465, 628, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 410
BstNSI	RCATGY	1 cut(s)	101
BstSNI	TACGTA	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	427, 430
BstX2I	RGATCY	2 cut(s)	339, 628
BstYI	RGATCY	2 cut(s)	339, 628
BstZ17I	GTATAC	1 cut(s)	131
Bsu15I	ATCGAT	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	484
BsuTUI	ATCGAT	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	3 cut(s)	27, 85, 622
Cac8I	GCNNGC	2 cut(s)	99, 327
Cfr13I	GGNCC	1 cut(s)	599
ClaI	ATCGAT	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	143, 359
CviAII	CATG	4 cut(s)	5, 18, 98, 125
CviJI	RGCY	8 cut(s)	42, 47, 149, 195, 240, 296, 440, 574
CviKI_1	RGCY	8 cut(s)	42, 47, 149, 195, 240, 296, 440, 574
CviQI	GTAC	2 cut(s)	143, 359
DdeI	CTNAG	1 cut(s)	575
DpnI	GATC	6 cut(s)	234, 335, 341, 467, 630, 699
DpnII	GATC	6 cut(s)	232, 333, 339, 465, 628, 697
DraI	TTTAAA	1 cut(s)	639
DraIII	CACNNNGTG	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	390
Eco105I	TACGTA	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	392
Eco31I	GGTCTC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	392
EcoT22I	ATGCAT	2 cut(s)	6, 99
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	4 cut(s)	8, 21, 101, 128
FatI	CATG	4 cut(s)	4, 17, 97, 124
FauNDI	CATATG	1 cut(s)	321
FbaI	TGATCA	1 cut(s)	697
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	4 cut(s)	241, 414, 441, 444
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	4 cut(s)	241, 414, 441, 444
FspBI	CTAG	3 cut(s)	39, 417, 437
GluI	GCNGC	4 cut(s)	241, 414, 441, 444
Hin1II	CATG	4 cut(s)	8, 21, 101, 128
HinfI	GANTC	5 cut(s)	24, 121, 353, 427, 533
Hpy166II	GTNNAC	3 cut(s)	71, 131, 143
Hpy188I	TCNGA	2 cut(s)	333, 726
Hpy188III	TCNNGA	3 cut(s)	260, 337, 431
Hpy8I	GTNNAC	3 cut(s)	71, 131, 143
HpyAV	CCTTC	2 cut(s)	164, 454
HpyCH4III	ACNGT	3 cut(s)	89, 593, 689
HpyCH4IV	ACGT	3 cut(s)	160, 211, 312
HpyCH4V	TGCA	6 cut(s)	4, 32, 92, 97, 101, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 410
HpyF3I	CTNAG	1 cut(s)	575
HpySE526I	ACGT	3 cut(s)	160, 211, 312
Hsp92II	CATG	4 cut(s)	8, 21, 101, 128
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	6 cut(s)	232, 333, 339, 465, 628, 697
LpnPI	CCDG	6 cut(s)	285, 303, 339, 444, 550, 628
Lsp1109I	GCAGC	2 cut(s)	427, 430
MaeI	CTAG	3 cut(s)	39, 417, 437
MaeII	ACGT	3 cut(s)	160, 211, 312
MaeIII	GTNAC	2 cut(s)	156, 671
MalI	GATC	6 cut(s)	234, 335, 341, 467, 630, 699
MboI	GATC	6 cut(s)	232, 333, 339, 465, 628, 697
MboII	GAAGA	3 cut(s)	68, 130, 638
MflI	RGATCY	2 cut(s)	339, 628
MluCI	AATT	8 cut(s)	164, 365, 470, 476, 633, 664, 682, 727
MlyI	GAGTC	1 cut(s)	436
MnlI	CCTC	1 cut(s)	544
Mph1103I	ATGCAT	2 cut(s)	6, 99
MseI	TTAA	4 cut(s)	14, 546, 638, 663
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	98, 410
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	6 cut(s)	232, 333, 339, 465, 628, 697
NlaIII	CATG	4 cut(s)	8, 21, 101, 128
NlaIV	GGNNCC	1 cut(s)	412
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	1 cut(s)	671
NsiI	ATGCAT	2 cut(s)	6, 99
NspI	RCATGY	1 cut(s)	101
NspV	TTCGAA	2 cut(s)	474, 480
OliI	CACNNNNGTG	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	101
PfeI	GAWTC	4 cut(s)	24, 121, 353, 533
PkrI	GCNGC	4 cut(s)	242, 415, 442, 445
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
Ppu21I	YACGTR	2 cut(s)	161, 212
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	339, 628
RsaI	GTAC	2 cut(s)	144, 360
RsaNI	GTAC	2 cut(s)	143, 359
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	4 cut(s)	14, 546, 638, 663
SatI	GCNGC	4 cut(s)	241, 414, 441, 444
Sau3AI	GATC	6 cut(s)	232, 333, 339, 465, 628, 697
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	1 cut(s)	436
SetI	ASST	7 cut(s)	44, 151, 163, 214, 315, 442, 569
SfuI	TTCGAA	2 cut(s)	474, 480
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
SnaBI	TACGTA	1 cut(s)	161
SphI	GCATGC	1 cut(s)	101
Sse9I	AATT	8 cut(s)	164, 365, 470, 476, 633, 664, 682, 727
SsiI	CCGC	3 cut(s)	241, 375, 414
SspMI	CTAG	3 cut(s)	39, 417, 437
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	3 cut(s)	89, 593, 689
TaiI	ACGT	3 cut(s)	163, 214, 315
TaqI	TCGA	7 cut(s)	108, 235, 336, 474, 480, 531, 536
TasI	AATT	8 cut(s)	164, 365, 470, 476, 633, 664, 682, 727
TatI	WGTACW	1 cut(s)	358
TauI	GCSGC	2 cut(s)	243, 416
TfiI	GAWTC	4 cut(s)	24, 121, 353, 533
Tru1I	TTAA	4 cut(s)	14, 546, 638, 663
Tru9I	TTAA	4 cut(s)	14, 546, 638, 663
TscAI	CASTG	3 cut(s)	34, 92, 622
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	2 cut(s)	440, 443
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	1 cut(s)	721
TspRI	CASTG	3 cut(s)	34, 92, 622
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	4 cut(s)	164, 470, 476, 727
XceI	RCATGY	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	130
XspI	CTAG	3 cut(s)	39, 417, 437
Zsp2I	ATGCAT	2 cut(s)	6, 99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.