Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006040

Physical Location & Seq

Genomic Coordinates Reverse (-)

41344535 .. 41345282

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1295000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCACCACAAATAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTCCTGACTATGAAACTAAAGATACTGATATTTTGGCAGCATTTCGAGTAACTCCTGAACCTGGAGTTCCACCTGAGGAAGCAGGGGCCGCGGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGGCCCGCCTCATGGTATCCAAGTTAAGAGAGATAAATTGAACAAGTATGGCCGCCCTCTATTGGGATGTACTATAAAACCAAAATTGGGGTTATCCGCTAAGAATTATGGTAGAGCAGTTTATGAATGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAGAATGTTAATTCCCAACCATTTATGCATTGGAGAGACCGTTTCTTATTTTTTGCCGAAGCAATTTATAAAGCACAGGCTGAAACAGGTGAAATCAAAGGGCATTACTTAAACGCTACTGCAAGTACATGCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000312 GO:0000313 GO:0000314 GO:0001101 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0010033 GO:0010035 GO:0010038 GO:0010287 GO:0015935 GO:0016020 GO:0022626 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0055035 GO:0071944 GO:0097305 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RuBisCO_large RuBisCO_large_N

Protein Analysis

168

Amino Acids

18.4

Weight (kDa)

6.83

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuBisCO_large_N	PF02788	24 - 68	4.2e-14	Ribulose bisphosphate carboxylase large chain, N-terminal domain
RuBisCO_large	PF00016	73 - 167	1e-45	Ribulose bisphosphate carboxylase large chain, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00490
malus_domestica	MD02G1049600.v1.1 MD11G1294900.v1.1 MD11G1295000.v1.1
prunus_persica	Prupe.7G029600_v2.0.a1
pyrus_communis	pycom08g13270 pycom12397g00250
rosa_chinensis	RchiOBHm_Chr5g0043011 RchiOBHm_CPg0502111
rosa_laevigata	RLG00000000069 RLG00000000106 RLG00000000163 RLG00000000221 RLG00000000257 RLG00000000267 RLG00000000290 RLG00000000329 RLG00000000350 RLG00000037105
rosa_roxburghii	Rroxscaffold_2G00087120 Rroxscaffold_3G00220720
rosa_rugosa	RorugMtG0002400.1
rosa_samantha	Rh2AG282300 Rh2BG293600 Rh2DG288500 Rh5BG295000 Rh5DG304800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	60, 435
AccI	GTMKAC	1 cut(s)	334
AccII	CGCG	2 cut(s)	167, 339
AciI	CCGC	6 cut(s)	165, 167, 209, 256, 300, 339
AcoI	YGGCCR	1 cut(s)	253
AfaI	GTAC	3 cut(s)	193, 274, 493
AfiI	CCNNNNNNNGG	5 cut(s)	137, 215, 265, 266, 290
AgsI	TTSAA	2 cut(s)	40, 244
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	2 cut(s)	44, 173
AluI	AGCT	2 cut(s)	44, 173
Alw26I	GTCTC	2 cut(s)	11, 396
AoxI	GGCC	3 cut(s)	162, 205, 253
ApeKI	GCWGC	2 cut(s)	113, 173
AspS9I	GGNCC	2 cut(s)	162, 206
AsuHPI	GGTGA	1 cut(s)	467
AxyI	CCTNAGG	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	125, 160
BciT130I	CCWGG	1 cut(s)	138
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	11, 396
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	4 cut(s)	114, 165, 174, 256
BlsI	GCNGC	4 cut(s)	115, 166, 175, 257
Bme1390I	CCNGG	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	162, 206
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bsc4I	CCNNNNNNNGG	5 cut(s)	137, 215, 265, 266, 290
Bse1I	ACTGG	2 cut(s)	193, 208
Bse21I	CCTNAGG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	5 cut(s)	137, 215, 265, 266, 290
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	193, 208
BseXI	GCAGC	2 cut(s)	125, 160
Bsh1236I	CGCG	2 cut(s)	167, 339
BshFI	GGCC	3 cut(s)	164, 207, 255
BslI	CCNNNNNNNGG	5 cut(s)	137, 215, 265, 266, 290
BsmAI	GTCTC	2 cut(s)	11, 396
BsnI	GGCC	3 cut(s)	164, 207, 255
Bso31I	GGTCTC	1 cut(s)	396
BspACI	CCGC	6 cut(s)	165, 167, 209, 256, 300, 339
BspANI	GGCC	3 cut(s)	164, 207, 255
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	2 cut(s)	167, 339
BspLI	GGNNCC	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	193, 208
BssECI	CCNNGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	150, 303
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	275
BstFNI	CGCG	2 cut(s)	167, 339
BstMAI	GTCTC	2 cut(s)	11, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 170, 173
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	136
BstUI	CGCG	2 cut(s)	167, 339
BstV1I	GCAGC	2 cut(s)	125, 160
Bsu36I	CCTNAGG	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	3 cut(s)	164, 207, 255
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	162, 206
Cfr42I	CCGCGG	1 cut(s)	168
Csp6I	GTAC	3 cut(s)	192, 273, 492
CviAII	CATG	3 cut(s)	195, 215, 495
CviJI	RGCY	6 cut(s)	44, 164, 173, 207, 255, 446
CviKI_1	RGCY	6 cut(s)	44, 164, 173, 207, 255, 446
CviQI	GTAC	3 cut(s)	192, 273, 492
DdeI	CTNAG	2 cut(s)	150, 303
EaeI	YGGCCR	1 cut(s)	253
Eco31I	GGTCTC	1 cut(s)	396
Eco81I	CCTNAGG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	396
FaeI	CATG	3 cut(s)	198, 218, 498
FatI	CATG	3 cut(s)	194, 214, 494
FauI	CCCGC	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	334
Fnu4HI	GCNGC	4 cut(s)	114, 165, 174, 256
FokI	GGATG	1 cut(s)	282
Fsp4HI	GCNGC	4 cut(s)	114, 165, 174, 256
GluI	GCNGC	4 cut(s)	114, 165, 174, 256
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	164, 207, 255
Hin1II	CATG	3 cut(s)	198, 218, 498
HinfI	GANTC	2 cut(s)	36, 179
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	335, 344
Hpy188III	TCNNGA	2 cut(s)	80, 131
Hpy8I	GTNNAC	2 cut(s)	335, 344
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	2 cut(s)	394, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 170, 173
HpyF3I	CTNAG	2 cut(s)	150, 303
Hsp92II	CATG	3 cut(s)	198, 218, 498
KspI	CCGCGG	1 cut(s)	168
Lsp1109I	GCAGC	2 cut(s)	125, 160
MaeIII	GTNAC	2 cut(s)	3, 124
MboII	GAAGA	1 cut(s)	174
MluCI	AATT	6 cut(s)	62, 239, 287, 307, 376, 429
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	145, 222, 270
Mph1103I	ATGCAT	1 cut(s)	396
MseI	TTAA	4 cut(s)	51, 228, 375, 476
MspA1I	CMGCKG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
MvnI	CGCG	2 cut(s)	167, 339
MwoI	GCNNNNNNNGC	3 cut(s)	164, 170, 173
NlaIII	CATG	3 cut(s)	198, 218, 498
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	3
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	36, 179
PkrI	GCNGC	4 cut(s)	115, 166, 175, 257
PsiI	TTATAA	2 cut(s)	60, 435
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	162, 206
RsaI	GTAC	3 cut(s)	193, 274, 493
RsaNI	GTAC	3 cut(s)	192, 273, 492
SacII	CCGCGG	1 cut(s)	168
SaqAI	TTAA	4 cut(s)	51, 228, 375, 476
SatI	GCNGC	4 cut(s)	114, 165, 174, 256
Sau96I	GGNCC	2 cut(s)	162, 206
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	5 cut(s)	46, 139, 151, 175, 457
Sfr303I	CCGCGG	1 cut(s)	168
SgrBI	CCGCGG	1 cut(s)	168
Sse9I	AATT	6 cut(s)	62, 239, 287, 307, 376, 429
SsiI	CCGC	6 cut(s)	165, 167, 209, 256, 300, 339
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	407
TaqI	TCGA	1 cut(s)	121
TasI	AATT	6 cut(s)	62, 239, 287, 307, 376, 429
TatI	WGTACW	2 cut(s)	272, 491
TauI	GCSGC	2 cut(s)	167, 258
TfiI	GAWTC	2 cut(s)	36, 179
Tru1I	TTAA	4 cut(s)	51, 228, 375, 476
Tru9I	TTAA	4 cut(s)	51, 228, 375, 476
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	2 cut(s)	113, 173
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	102, 342
XceI	RCATGY	1 cut(s)	498
XcmI	CCANNNNNNNNNTGG	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	334
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.