Prupe.7G029600_v2.0.a1

Ribulose bisphosphate carboxylase large chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0006040
Physical Location & Seq
Reverse (-)
5477979 .. 5478647
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G029600.1

Sequence Viewer

Length: 534 bp
ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTGAAGCAAGTATTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTCCTGACTATGAAACCAAAGACACTGATATCTTGGCAGCATTTCGAGTAACTCCTCAACCTGGAGTTCCACCTGAAGAAGCAGGGGCAGCGGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTATGGACTGAAGGGCTTTCTAATCTTGATCGTTACAAAGGTCGATGCTACCACATCGAGCCCGTTGCTGGAGAAGAAAGTCAATTTATTGCTTATGTAGCTTACCCCTTAGACCTTTTTGAAGAGGGTTCTGTTACTAACATGTTTACTTCCATTGTAGGTAATGTATTTGGGTTCAAGGCCCTGCGCGCTCTACGTCTGGAGGATTTGCGAATCCCTCCTGAAACTTTCCAAGGCCCGCCTCATGGGATCCAAGTTGAGAGAGATAAATTGAACAAGTATGGCCGCCCCCTTTTTCTTTTCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200
Pfam Domains
Protein Families
RuBisCO_large RuBisCO_large_N

Protein Analysis

178

Amino Acids

19.7

Weight (kDa)

4.91

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccII CGCG 1 cut(s) 414
AciI CCGC 3 cut(s) 188, 464, 511
AclWI GGATC 2 cut(s) 469, 482
AcoI YGGCCR 1 cut(s) 508
AcuI CTGAAG 3 cut(s) 63, 192, 255
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 158, 293, 470
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 4 cut(s) 61, 347, 403, 499
AjnI CCWGG 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 36, 68
AluBI AGCT 3 cut(s) 65, 194, 326
AluI AGCT 3 cut(s) 65, 194, 326
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 469, 482
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 3 cut(s) 405, 460, 508
ApeKI GCWGC 3 cut(s) 134, 185, 194
AspLEI GCGC 2 cut(s) 414, 416
AspS9I GGNCC 2 cut(s) 406, 461
AsuHPI GGTGA 1 cut(s) 18
BamHI GGATCC 1 cut(s) 474
BanII GRGCYC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 146, 181, 197
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BciT130I CCWGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 32
BisI GCNGC 4 cut(s) 135, 186, 195, 511
BlsI GCNGC 4 cut(s) 136, 187, 196, 512
Bme1390I CCNGG 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 406, 461
BmiI GGNNCC 1 cut(s) 476
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 260
BoxI GACNNNNGTC 1 cut(s) 22
BpmI CTGGAG 3 cut(s) 180, 315, 446
BsaJI CCNNGG 1 cut(s) 457
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 293, 470
Bse1I ACTGG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 457
BseLI CCNNNNNNNGG 3 cut(s) 158, 293, 470
BseNI ACTGG 1 cut(s) 214
BsePI GCGCGC 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 3 cut(s) 146, 181, 197
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 3 cut(s) 407, 462, 510
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 3 cut(s) 158, 293, 470
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 3 cut(s) 407, 462, 510
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 253, 474
BspACI CCGC 3 cut(s) 188, 464, 511
BspANI GGCC 3 cut(s) 407, 462, 510
BspFNI CGCG 1 cut(s) 414
BspLI GGNNCC 1 cut(s) 476
BspPI GGATC 2 cut(s) 469, 482
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 457
BssHII GCGCGC 1 cut(s) 412
BssMI GATC 2 cut(s) 253, 474
BssT1I CCWWGG 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 414, 464
BstDEI CTNAG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 414
BstHHI GCGC 2 cut(s) 414, 416
BstKTI GATC 2 cut(s) 256, 477
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 253, 474
BstMWI GCNNNNNNNGC 5 cut(s) 185, 191, 194, 323, 413
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 370
BstPAI GACNNNNGTC 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 157
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 3 cut(s) 146, 181, 197
BstX2I RGATCY 1 cut(s) 474
BstYI RGATCY 1 cut(s) 474
BsuRI GGCC 3 cut(s) 407, 462, 510
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 414, 464
CaiI CAGNNNCTG 1 cut(s) 41
CfoI GCGC 2 cut(s) 414, 416
Cfr13I GGNCC 2 cut(s) 406, 461
Csp6I GTAC 1 cut(s) 213
CviAII CATG 3 cut(s) 216, 367, 470
CviJI RGCY 8 cut(s) 65, 194, 241, 286, 326, 407, 462, 510
CviKI_1 RGCY 8 cut(s) 65, 194, 241, 286, 326, 407, 462, 510
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 334
DpnI GATC 2 cut(s) 255, 476
DpnII GATC 2 cut(s) 253, 474
EaeI YGGCCR 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 288
Eco32I GATATC 1 cut(s) 127
Eco57I CTGAAG 3 cut(s) 63, 192, 255
EcoO109I RGGNCCY 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 157
EcoRV GATATC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 3 cut(s) 219, 370, 473
FaqI GGGAC 1 cut(s) 30
FatI CATG 3 cut(s) 215, 366, 469
FauI CCCGC 1 cut(s) 471
Fnu4HI GCNGC 4 cut(s) 135, 186, 195, 511
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 4 cut(s) 135, 186, 195, 511
GlaI GCGC 2 cut(s) 413, 415
GluI GCNGC 4 cut(s) 135, 186, 195, 511
GsuI CTGGAG 3 cut(s) 180, 315, 446
HaeIII GGCC 3 cut(s) 407, 462, 510
HhaI GCGC 2 cut(s) 414, 416
Hin1II CATG 3 cut(s) 219, 370, 473
Hin6I GCGC 2 cut(s) 412, 414
HinP1I GCGC 2 cut(s) 412, 414
HinfI GANTC 3 cut(s) 57, 200, 438
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 372
Hpy188III TCNNGA 4 cut(s) 101, 251, 425, 446
Hpy8I GTNNAC 1 cut(s) 372
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 421
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 191, 194, 323, 413
HpyF3I CTNAG 1 cut(s) 334
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 3 cut(s) 219, 370, 473
HspAI GCGC 2 cut(s) 412, 414
Kzo9I GATC 2 cut(s) 253, 474
Lsp1109I GCAGC 3 cut(s) 146, 181, 197
LweI GCATC 1 cut(s) 260
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 4 cut(s) 24, 145, 257, 358
MalI GATC 2 cut(s) 255, 476
MboI GATC 2 cut(s) 253, 474
MboII GAAGA 4 cut(s) 185, 195, 311, 359
MflI RGATCY 1 cut(s) 474
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 3 cut(s) 83, 308, 494
MnlI CCTC 6 cut(s) 7, 162, 343, 421, 453, 477
MseI TTAA 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 5 cut(s) 185, 191, 194, 323, 413
NdeII GATC 2 cut(s) 253, 474
NlaIII CATG 3 cut(s) 219, 370, 473
NlaIV GGNNCC 1 cut(s) 476
NmuCI GTSAC 1 cut(s) 24
NspI RCATGY 1 cut(s) 370
PauI GCGCGC 1 cut(s) 412
PciI ACATGT 1 cut(s) 366
PfeI GAWTC 3 cut(s) 57, 200, 438
PkrI GCNGC 4 cut(s) 136, 187, 196, 512
PscI ACATGT 1 cut(s) 366
PshAI GACNNNNGTC 1 cut(s) 22
PsiI TTATAA 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 476
PspPI GGNCC 2 cut(s) 406, 461
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 474
PteI GCGCGC 1 cut(s) 412
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 4 cut(s) 135, 186, 195, 511
Sau3AI GATC 2 cut(s) 253, 474
Sau96I GGNCC 2 cut(s) 406, 461
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 288
SetI ASST 9 cut(s) 67, 160, 172, 196, 268, 328, 342, 388, 424
SfaNI GCATC 1 cut(s) 260
Sse9I AATT 3 cut(s) 83, 308, 494
SsiI CCGC 3 cut(s) 188, 464, 511
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 424
TaqI TCGA 3 cut(s) 142, 268, 282
TasI AATT 3 cut(s) 83, 308, 494
TauI GCSGC 1 cut(s) 513
TfiI GAWTC 3 cut(s) 57, 200, 438
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 3 cut(s) 134, 185, 194
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 123
TspRI CASTG 1 cut(s) 127
XceI RCATGY 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.