Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006040

Physical Location & Seq

Genomic Coordinates Reverse (-)

11895448 .. 11895660

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCATGCTTTGACCGAGATATTTAGAGATGATTTTGTACTACAATTTGGTGGCGGAACTTTAGGACACCCTTGGGGAAATGAACTTGGTGCCATAGCTAATCGAGGAGCTCTAAAAACATGTATGCATGCTTGTAATGAGGGATGTGATCTTGCTCATGAGGGTAATGAAATTATTCATGAGGCTAGTAAATGGAGTCTTGAACTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RuBisCO_large

Protein Analysis

71

Amino Acids

7.59

Weight (kDa)

5.09

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuBisCO_large	PF00016	1 - 62	7.8e-12	Ribulose bisphosphate carboxylase large chain, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00490
malus_domestica	MD02G1049600.v1.1 MD11G1294900.v1.1 MD11G1295000.v1.1
prunus_persica	Prupe.7G029600_v2.0.a1
pyrus_communis	pycom08g13270 pycom12397g00250
rosa_chinensis	RchiOBHm_Chr5g0043011 RchiOBHm_CPg0502111
rosa_laevigata	RLG00000000069 RLG00000000106 RLG00000000163 RLG00000000221 RLG00000000257 RLG00000000267 RLG00000000290 RLG00000000329 RLG00000000350 RLG00000037105
rosa_roxburghii	Rroxscaffold_2G00087120 Rroxscaffold_3G00220720
rosa_rugosa	RorugMtG0002400.1
rosa_samantha	Rh2AG282300 Rh2BG293600 Rh2DG288500 Rh5BG295000 Rh5DG304800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	39
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	2 cut(s)	98, 110
AluI	AGCT	2 cut(s)	98, 110
Alw21I	GWGCWC	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	112
BfaI	CTAG	2 cut(s)	186, 206
BmiI	GGNNCC	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	54
BspHI	TCATGA	2 cut(s)	157, 178
BspLI	GGNNCC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	6, 129
BstF5I	GGATG	1 cut(s)	149
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstNSI	RCATGY	3 cut(s)	8, 123, 131
BtsCI	GGATG	1 cut(s)	149
Cac8I	GCNNGC	2 cut(s)	6, 129
CciI	TCATGA	2 cut(s)	157, 178
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	5 cut(s)	5, 120, 128, 158, 179
CviJI	RGCY	3 cut(s)	98, 110, 185
CviKI_1	RGCY	3 cut(s)	98, 110, 185
CviQI	GTAC	1 cut(s)	38
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	71
EcoT22I	ATGCAT	2 cut(s)	6, 129
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	5 cut(s)	8, 123, 131, 161, 182
FaiI	YATR	7 cut(s)	6, 95, 121, 125, 129, 159, 180
FatI	CATG	5 cut(s)	4, 119, 127, 157, 178
FokI	GGATG	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	112
FspBI	CTAG	2 cut(s)	186, 206
Hin1II	CATG	5 cut(s)	8, 123, 131, 161, 182
HinfI	GANTC	1 cut(s)	196
Hpy188III	TCNNGA	3 cut(s)	158, 179, 200
HpyCH4V	TGCA	2 cut(s)	4, 127
Hsp92II	CATG	5 cut(s)	8, 123, 131, 161, 182
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	107
MaeI	CTAG	2 cut(s)	186, 206
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	2 cut(s)	44, 171
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	4 cut(s)	98, 133, 154, 175
Mph1103I	ATGCAT	2 cut(s)	6, 129
MroXI	GAANNNNTTC	1 cut(s)	174
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	5 cut(s)	8, 123, 131, 161, 182
NlaIV	GGNNCC	1 cut(s)	91
NsiI	ATGCAT	2 cut(s)	6, 129
NspI	RCATGY	3 cut(s)	8, 123, 131
PaeI	GCATGC	2 cut(s)	8, 131
PagI	TCATGA	2 cut(s)	157, 178
PciI	ACATGT	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	174
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PscI	ACATGT	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	91
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	112
Sau3AI	GATC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	3 cut(s)	100, 112, 211
SphI	GCATGC	2 cut(s)	8, 131
Sse9I	AATT	2 cut(s)	44, 171
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	2 cut(s)	186, 206
SstI	GAGCTC	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	71
TaqI	TCGA	1 cut(s)	103
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	44, 171
TatI	WGTACW	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	96, 167, 183
XceI	RCATGY	3 cut(s)	8, 123, 131
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	2 cut(s)	186, 206
Zsp2I	ATGCAT	2 cut(s)	6, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.