Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006040

Physical Location & Seq

Genomic Coordinates Forward (+)

9219126 .. 9221688

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTTGAGAAAGAAAACTGTTGAGCCAGCTAATCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCCCGCTCGTGAGGGTAATGAAATTATTCGTGAGGCTGGTAAATGGAATCCTGAACTAGCTGCCGCTTGTGAGCGTGCATTGAGTTCAGTTCAGGAGTTTCCTCATAAGCAAACTACTCAGATAGAGCTGTTTGGAGTTTTGAATCATCTCAGCCTCTTTTACGTATTCAGGATTGCACTTGAGATGAGTATCTATGGAAAACTTACAAAGAGGGCTGTGGAGACTGATATGCCCGTCATGGTTCAGGTTGCAATTGAGACCTCTTATGATTATGATGCTCCTCTTAATGAGTATGACATTTGTGTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00630 ko00640 ko00710 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00630 map00640 map00710 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

RuBisCO_large RuBisCO_large_N

Protein Analysis

130

Amino Acids

14.76

Weight (kDa)

5.45

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00490
malus_domestica	MD02G1049600.v1.1 MD11G1294900.v1.1 MD11G1295000.v1.1
prunus_persica	Prupe.7G029600_v2.0.a1
pyrus_communis	pycom08g13270 pycom12397g00250
rosa_chinensis	RchiOBHm_Chr5g0043011 RchiOBHm_CPg0502111
rosa_laevigata	RLG00000000069 RLG00000000106 RLG00000000163 RLG00000000221 RLG00000000257 RLG00000000267 RLG00000000290 RLG00000000329 RLG00000000350 RLG00000037105
rosa_roxburghii	Rroxscaffold_2G00087120 Rroxscaffold_3G00220720
rosa_rugosa	RorugMtG0002400.1
rosa_samantha	Rh2AG282300 Rh2BG293600 Rh2DG288500 Rh5BG295000 Rh5DG304800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AccBSI	CCGCTC	1 cut(s)	86
AciI	CCGC	2 cut(s)	84, 144
AclWI	GGATC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	77
AluBI	AGCT	5 cut(s)	29, 41, 62, 140, 208
AluI	AGCT	5 cut(s)	29, 41, 62, 140, 208
Alw26I	GTCTC	2 cut(s)	296, 332
AlwI	GGATC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	2 cut(s)	39, 71
BauI	CACGAG	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	296, 332
BfaI	CTAG	2 cut(s)	44, 137
BisI	GCNGC	2 cut(s)	141, 144
BlsI	GCNGC	2 cut(s)	142, 145
BmgBI	CACGTC	1 cut(s)	77
BmsI	GCATC	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	332
Bse8I	GATNNNNATC	1 cut(s)	269
BseJI	GATNNNNATC	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	212, 244
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	87
BsmAI	GTCTC	2 cut(s)	296, 332
BsmFI	GGGAC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	332
Bsp1407I	TGTACA	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	2 cut(s)	84, 144
BspCNI	CTCAG	2 cut(s)	211, 243
BspPI	GGATC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	86
BsrGI	TGTACA	1 cut(s)	55
BssMI	GATC	1 cut(s)	79
BssSI	CACGAG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	19
BstAUI	TGTACA	1 cut(s)	55
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	27, 156
BstDEI	CTNAG	2 cut(s)	198, 230
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	2 cut(s)	296, 332
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	54
BstSNI	TACGTA	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	127
BtrI	CACGTC	1 cut(s)	77
Cac8I	GCNNGC	2 cut(s)	27, 156
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	2 cut(s)	51, 319
CviJI	RGCY	9 cut(s)	25, 29, 41, 62, 116, 140, 208, 234, 296
CviKI_1	RGCY	9 cut(s)	25, 29, 41, 62, 116, 140, 208, 234, 296
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	198, 230
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Eco105I	TACGTA	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	332
FaeI	CATG	2 cut(s)	54, 322
FaiI	YATR	8 cut(s)	52, 186, 276, 311, 320, 348, 354, 375
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	2 cut(s)	50, 318
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	141, 144
Fsp4HI	GCNGC	2 cut(s)	141, 144
FspBI	CTAG	2 cut(s)	44, 137
GluI	GCNGC	2 cut(s)	141, 144
Hin1II	CATG	2 cut(s)	54, 322
HinfI	GANTC	2 cut(s)	127, 223
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	6 cut(s)	44, 89, 110, 131, 173, 250
Hpy8I	GTNNAC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	2 cut(s)	76, 243
HpyCH4V	TGCA	3 cut(s)	158, 257, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	2 cut(s)	198, 230
HpySE526I	ACGT	2 cut(s)	76, 243
Hsp92II	CATG	2 cut(s)	54, 322
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	6 cut(s)	39, 102, 144, 158, 235, 311
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	2 cut(s)	44, 137
MaeII	ACGT	2 cut(s)	76, 243
MalI	GATC	1 cut(s)	81
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	1 cut(s)	79
MfeI	CAATTG	1 cut(s)	333
MluCI	AATT	2 cut(s)	102, 333
MnlI	CCTC	8 cut(s)	64, 85, 106, 192, 245, 285, 352, 372
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	1 cut(s)	366
MunI	CAATTG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	54, 322
NspI	RCATGY	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	127, 223
PkrI	GCNGC	2 cut(s)	142, 145
Ppu21I	YACGTR	1 cut(s)	244
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	2 cut(s)	141, 144
Sau3AI	GATC	1 cut(s)	79
SetI	ASST	9 cut(s)	31, 43, 64, 79, 142, 210, 246, 330, 344
SfaNI	GCATC	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SnaBI	TACGTA	1 cut(s)	244
Sse9I	AATT	2 cut(s)	102, 333
SsiI	CCGC	2 cut(s)	84, 144
SspMI	CTAG	2 cut(s)	44, 137
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	2 cut(s)	79, 246
TaqI	TCGA	1 cut(s)	34
TasI	AATT	2 cut(s)	102, 333
TatI	WGTACW	1 cut(s)	55
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	127, 223
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	114
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	2 cut(s)	44, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.