Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005776

Physical Location & Seq

Genomic Coordinates Forward (+)

42666045 .. 42666634

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1314300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 144 bp

ATGCCTGGGAGTTTACTTTTCTGCATTTCCACTATGTTCATGATCTTGTTGCCAAGCAGTATTATAAAGCCAGAGAATGTTGGTTTAACTGTCTCCTACGGACTGTCCCTTAATGGTGTGCTGTTCTGGGGTCATATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009624 GO:0009628 GO:0009987 GO:0010035 GO:0010118 GO:0012505 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

48

Amino Acids

5.15

Weight (kDa)

6.5

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47800 AT3G62700
fragaria_vesca	FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570
malus_domestica	MD03G1286300.v1.1 MD11G1313300.v1.1 MD11G1313800.v1.1 MD11G1314300.v1.1
prunus_persica	Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1
pyrus_communis	pycom03g22680 pycom03g22690 pycom11g27270
rosa_chinensis	RchiOBHm_Chr6g0293781
rosa_laevigata	RLG00000011924
rosa_multiflora	Rmu_sc0005641.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173910
rosa_rugosa	Rorug06G0238000
rosa_samantha	Rh6AG351300 Rh6BG358200 Rh6DG352000
rosa_wichuraiana	Rw6G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	4
Alw26I	GTCTC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	91, 105
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
CciI	TCATGA	1 cut(s)	39
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	1 cut(s)	70
CviKI_1	RGCY	1 cut(s)	70
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	4
FaeI	CATG	1 cut(s)	43
FaiI	YATR	5 cut(s)	35, 41, 65, 135, 137
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	39
Hin1II	CATG	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	14
HpyCH4III	ACNGT	2 cut(s)	91, 105
HpyCH4V	TGCA	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	3 cut(s)	18, 84, 112
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MseI	TTAA	2 cut(s)	86, 111
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	43
PagI	TCATGA	1 cut(s)	39
PsiI	TTATAA	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	86, 111
Sau3AI	GATC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	6
SgeI	CNNG	7 cut(s)	17, 18, 52, 58, 66, 83, 139
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	2 cut(s)	91, 105
Tru1I	TTAA	2 cut(s)	86, 111
Tru9I	TTAA	2 cut(s)	86, 111
TspDTI	ATGAA	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.