Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005776

Physical Location & Seq

Genomic Coordinates Forward (+)

55027752 .. 55034843

Gene Structure 7092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG351300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4536 bp

ATGGCTTCTGGGTCTTGGATCACGTCCACCTCGTGTTCCTCGCCCGTGACTCAATCCCATGACGACACCTCAGCTCCGGCCATCTTCCAATGGCTGAGATTCGTCTTCCTCTCCCCCTGTCCGCAGAGAGCTCTGTTATCCTCCATTGATCTCTTGTTCCTGCTCACCCTCATCGCCTTCTCAATCCAAAAGCTCTACTCGAGGTTCACCTCCCCCCGCGGCGGCAGCAGCAGCTCGGAACTCGATAAGCCGTTGATAACAAACAGCAGAGCTCGCCGTCCCGGAACGACGCTCTGCTTCAAGCTCTCTCTGACTCTCAGCGTTTTCTTGACACTCTGTTACACCGTAGTGTGCATTTTCGTGTTTACAAGAGGAAGTCCTGACTTCCCATGGAAGATCATAGATGGGTTGTTTTGGCTGGTGCAAGCTATAACTCATGGACTCATTACGGTACTGGTGGCACATGAAAAGAGATTTGAAGCTGTCAAGCACCCGCTTTCGCTTCGTATTTACTGGGTGGCCAATTCCGTTGCTGTTTCTCTGTTTGCAACTTCTGGAGTGATTCGTTTGGTTTACAATGAAGGGGGTTTGAGATTGGATGATGTAGTTTCCATTGTGTCTTTTCCTTTATCGGCTGTTCTTGCTGTTGTTGCGGTTAGAGGATCCACTGGCATTAGAGTGATGAACAGAGAACAATCTAATGGAGGAGAAAACGGTGTGGAGACTAAATTGCATGAACCCCTCTTGAGCAAATCCAATGTGACTGGTTTTGCTTCAGCTTCATTCATTAGTAAAACCTTTTGGGTTTGGATGAATCCTCTGCTCAGTAAAGGGTACAAATCCCCCTTGAAGGTTGATGACGTTCCAACACTTGCTCCACAACACAGAGCCGAAAGAATGTCGGTGATTTTCGAATCCAACTGGCCTAAACCGGAGGAGAAGTCAGAGCATCCGGTTCGAACCACATTGCTCCGGTGCTTCTGGAAAGAAATTGCGTTCACAGCTTCTCTTGCGGTGATCAGGCTGTGTGTCATGTATGTAGGGCCTGTGCTTATCCAGAGCTTTGTGGATTTCACTAATGGGAAACGAAGCTCGCCGTTTGAGGGATACTACCTTGTGTTGATTCTTCTGTGTGCTAAGTTCGTTGAGGTTTTGAGCACTCACCAGTTCAATTTCAACTCACAGAAACTCGGCATGCTCATAAGATCAACTCTCATAACTTCTCTGTACAGGAAGGGCTTGAGGCTGACCTGCTCGGCGCGACAAGCTCATGGTGTTGGACAGATTGTGAATTACATGGCTGTGGATGCTCAGCAGCTCTCTGACATGATGCTGCAGCTTCATGCTATATGGATGATGCCGGTCCAGCTCACCATTGCTTTAATCCTGCTGTACAACAACCTCGGTGCAGCTACAATCACAGCAGTGATTGGAATCATGGGTGTGCTTGTGTTTGTGGTGTTTGGGACGAGAAGGAACAACAGGTTTCAGTTCAATCTGATGAAGCAAAGGGATTCGAGGATGAAGGCGACAAACGAGATGCTTAACTACATGAGGGTGATCAAGTTCCAGGCTTGGGAGGAACACTTCAACAAGAGGATTCAGACTTTTCGTGAGTCGGAGTTTAGCTGGCTGACCAAGTTCATGTACTCCATCTCGGCTAATGTTGTGCTCATGTGGTGCACTCCCATACTTATATCAACCCTCACATTTGCCACTGCCTTGTATTTGGGTGTCAAACTTGATGCTGGGACCGTGTTCACTACCACAACCATTTTCAAAATTCTGCAGGAGCCTATTAGGACATTCCCACAATCTATGATTTCAATTTCTCAAGCTATGATCTCGCTTGGGAGGTTGGACCGGTATATGAGTAGTAGGGAACTAGTGGAGGGTTCGGTTGAGAGAGAAGAAGGTTGTGATAGTAGTGTTGCTGTGGAGGTTAAGAATGGTGCATTTAGCTGGGATGATGAAAGTAATGAAGAGGTTTTGAAGAATATAAACTTGACTATCAACAAAGGTGAGCTAACCGCGATTGTTGGGACAGTAGGATCTGGAAAGTCTTCCCTGCTGGCCTCAATCCTTGGTGAGATGCACAAATTATCCGGAAAGGTAAAAGTTTGCGGGACAACTGCCTATGTGGCTCAAACATCATGGATTCAAAATGGGACAATTGAAGAAAACATCCTATTTGGTTTGCCAATGGACAGAGCGAGATACCAGGAAGTTATGAGGGTCTGTTGCTTGGAAAAGGACATGGAAATGATGGAGTATGGAGATCAAACTGAAATAGGAGAGCGCGGCATCAACCTAAGTGGTGGACAGAAACAAAGGATACAGCTTGCCAGGGCAGTATATCAGGACTGTGACATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGATCAGAAATATTCAAGGAATGTGTACGGGGAGTACTTAAGAACAAGACCATTTTACTTGTAACCCATCAAGTTGACTTCTTGCATAATGTTGATCTTATTGTGGTCATGAGAGAAGGAATGATAGTACAAGCAGGAAAGTACAACGATTTGTTAAGCCTCGATTTCAAAGCACTTGTAGTTGCGCATGAAAGCTCCATGGAGCTTGTAGAAATGAGCACAGCTATGCCTGGTGAAAGTACTTCTCCCAAACCACAGATATCTCGGCAGTCCTCTTCAAAACATGGAGAAGCCAATGGCGAAAACAACTCTCAGCTGGCCGAACCCAAGTCCAAAGACGGAACATCTAAGCTCATCAAAGAAGAGGAGAAAGAATCAGGCAAAGTCAGCTTGCAGAATTACAAAATCTATTGCACAGAGGCTTTTGGATGGTGGGGTGTGGTGCTAGTGTTGTCTCTCTCTCTTTTGTGGCAAGGATCACTAATGGCTGGTGATTATTGGCTGGCCTATGAAACTTCAGAAAAGCGAGCATTGTCATTCGATCCTTCTGTGTTCATTACTGTCTATGCTATTATCGCAGCTGTTTCATTCTTCGTGGTATTGGTAAGAGCATTTTCTGTGACAATTGTGGGGCTTACAACAGCTCAAGTTTTCTTCAAGCAGATTCTTCACAGCATCCTTCATGCCCCCATGTCATTTTTCGATACTACACCTTCTGGAAGAATTTTGAGTAGGGCATCAACTGATCAGACGAATATCGACTTATTTCTTCCCTTCATTTTGGGCATTACCATTGCCATGTATATCACTGTGCTCAGTATCTTTATCGTCGTATGTCAAAACTCATGGCCAACAATCTTCTTACTCATACCACTTCTTTGGCTGAATATCTGGTACCGGGGTTACTATCTTGCATCATCTCGTGAATTAACTCGACTTGATTCAATCACAAAAGCGCCTGTTATCCATCATTTCTCAGAAAGCATATCTGGGGTTATGACAATCCGATCTTTCAGAAACCAGAACAAGTTTACCAAGGAAAATGTTAGGAGAGTGAATGCCAATTTGCGTATGGATTTCCACAATAACGGCTCCAATGAGTGGTTGGGATTCCGTCTAGAACTGCTTGGGAGCTTAATCCTCTGCATTTCCACTTTGTTCATGATCATGCTGCCAAGCAGTATAGTAAAGCCAGAGAATATTGGCTTATCACTCTCCTATGGATTGTCCCTCAACGGTGTACTATTTTGGGCCATATATATGAGCTGCTTCGTAGAAAATAGGATGGTGTCAGTTGAGAGGATAAAGCAGTTTTGTAACATTCCATCAGAAGCAGCATGGAAGATAGTAGATCGTGCCCCTCCGACGAATTGGCCAACTCATGGCAATGTTGAGCTGAAAGACCTACAGGTCAGATATCGTCCGAATACTCCCTTGGTTCTCAAAGGCATTAGTCTGAGCATTCATGGGGGTGAGAAGGTCGGTGTTGTTGGTCGAACGGGGAGTGGGAAATCCACTTTAATTCAGGTGTTCTTTAGGCTGGTGGAACCTTCAGCGGGAAAAATTATCATCGATGGCATCGACATATGCACGATAGGGCTTCATGATCTCCGGTCTAGCTTTGGGATCATTCCTCAAGAACCTGTCCTTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATCGGGGTGTATTCAGATGAAGAGATTTGGAAGAGCTTGGAGCGCTGCCAACTTAAAGATGTTGTTGCTGCAAAACCCAAAAAACTCGATGCTTTAGTGGCCGATGATGGAGATAATTGGAGCGTGGGGCAAAGACAGCTTCTTTGTTTGGGACGAGTTATGTTAAAGCGCAGCAGGCTGTTGTTCATGGATGAGGCCACGGCTTCAGTTGACTCACAGACGGATGCTGCGATACAAAAGATCATCAGAGAGGACTTTGCTGCATGTACAATCATCAGCATTGCTCACAGAATACCAACAGTGATGGACTGCAATAGAGTTTTAGTAGTAGATGCAGGAAGGGCTAAAGAGTTTGACTCACCAACACACTTGCTCGAGAGGCCATCGCTGTTTGGGGCACTGGTTCAGGAGTATGCCAACCGCTCAGCAGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009624 GO:0009628 GO:0009987 GO:0010035 GO:0010118 GO:0012505 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1511

Amino Acids

168.85

Weight (kDa)

8.58

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	336 - 599	4.6e-25	ABC transporter transmembrane region
ABC_tran	PF00005	664 - 797	2.2e-21	ABC transporter
ABC_membrane	PF00664	985 - 1196	3.8e-30	ABC transporter transmembrane region
ABC_tran	PF00005	1286 - 1434	4.1e-26	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47800 AT3G62700
fragaria_vesca	FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570
malus_domestica	MD03G1286300.v1.1 MD11G1313300.v1.1 MD11G1313800.v1.1 MD11G1314300.v1.1
prunus_persica	Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1
pyrus_communis	pycom03g22680 pycom03g22690 pycom11g27270
rosa_chinensis	RchiOBHm_Chr6g0293781
rosa_laevigata	RLG00000011924
rosa_multiflora	Rmu_sc0005641.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173910
rosa_rugosa	Rorug06G0238000
rosa_samantha	Rh6AG351300 Rh6BG358200 Rh6DG352000
rosa_wichuraiana	Rw6G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3824
Acc16I	TGCGCA	1 cut(s)	2601
Acc36I	ACCTGC	1 cut(s)	1259
Acc65I	GGTACC	1 cut(s)	3309
AccB1I	GGYRCC	1 cut(s)	3309
AccB7I	CCANNNNNTGG	2 cut(s)	3516, 3797
AccBSI	CCGCTC	1 cut(s)	4521
AccII	CGCG	4 cut(s)	219, 1261, 2033, 2301
AccIII	TCCGGA	1 cut(s)	2105
AclWI	GGATC	9 cut(s)	26, 657, 670, 2059, 2425, 2899, 2951, 4049, 4088
AcoI	YGGCCR	6 cut(s)	78, 519, 2733, 3263, 3788, 4197
AcsI	RAATTY	3 cut(s)	1782, 3138, 4530
AcuI	CTGAAG	5 cut(s)	759, 2377, 2916, 3951, 4287
AdeI	CACNNNGTG	1 cut(s)	33
AfeI	AGCGCT	1 cut(s)	4142
AfiI	CCNNNNNNNGG	7 cut(s)	221, 850, 1103, 1576, 3516, 3797, 3971
AflII	CTTAAG	1 cut(s)	2453
AgeI	ACCGGT	1 cut(s)	1863
AhlI	ACTAGT	1 cut(s)	1885
AjiI	CACGTC	1 cut(s)	24
AjnI	CCWGG	4 cut(s)	1569, 2220, 2345, 2644
AjuI	GAANNNNNNNTTGG	2 cut(s)	3833, 3865
AleI	CACNNNNGTG	2 cut(s)	347, 1424
Alw21I	GWGCWC	7 cut(s)	133, 274, 1160, 1674, 1685, 2636, 3231
Alw26I	GTCTC	2 cut(s)	716, 2874
Alw44I	GTGCAC	1 cut(s)	1681
AlwI	GGATC	9 cut(s)	26, 657, 670, 2059, 2425, 2899, 2951, 4049, 4088
Ama87I	CYCGRG	2 cut(s)	199, 4472
Aor13HI	TCCGGA	1 cut(s)	2105
Aor51HI	AGCGCT	1 cut(s)	4142
ApaLI	GTGCAC	1 cut(s)	1681
ApoI	RAATTY	3 cut(s)	1782, 3138, 4530
ArsI	GACNNNNNNTTYG	2 cut(s)	4224, 4256
AsiGI	ACCGGT	1 cut(s)	1863
Asp700I	GAANNNNTTC	1 cut(s)	2062
Asp718I	GGTACC	1 cut(s)	3309
AspLEI	GCGC	6 cut(s)	1261, 2301, 2602, 3373, 4143, 4269
AspS9I	GGNCC	5 cut(s)	1043, 1363, 1752, 1861, 3666
AsuC2I	CCSGG	2 cut(s)	282, 3314
AsuII	TTCGAA	2 cut(s)	912, 958
AvaI	CYCGRG	2 cut(s)	199, 4472
AvaII	GGWCC	3 cut(s)	1363, 1752, 1861
BaeGI	GKGCMC	3 cut(s)	1685, 3775, 4498
BaeI	ACNNNNGTAYC	2 cut(s)	3301, 3334
BalI	TGGCCA	3 cut(s)	521, 3265, 3790
BamHI	GGATCC	1 cut(s)	662
BanI	GGYRCC	1 cut(s)	3309
BanII	GRGCYC	2 cut(s)	133, 274
BauI	CACGAG	2 cut(s)	31, 3336
BbsI	GAAGAC	3 cut(s)	97, 2055, 2383
Bbv12I	GWGCWC	7 cut(s)	133, 274, 1160, 1674, 1685, 2636, 3231
BbvCI	CCTCAGC	1 cut(s)	70
BceAI	ACGGC	5 cut(s)	235, 261, 1081, 3520, 4314
BcgI	CGANNNNNNTGC	2 cut(s)	938, 972
BciT130I	CCWGG	4 cut(s)	1571, 2222, 2347, 2646
BciVI	GTATCC	2 cut(s)	1100, 2328
BclI	TGATCA	4 cut(s)	1017, 1560, 3160, 3579
BcnI	CCSGG	2 cut(s)	282, 3314
BcoDI	GTCTC	2 cut(s)	716, 2874
BcuI	ACTAGT	1 cut(s)	1885
BfaI	CTAG	4 cut(s)	1886, 2861, 3533, 4032
BfmI	CTRYAG	3 cut(s)	1334, 1787, 3821
BfoI	RGCGCY	2 cut(s)	3374, 4144
BfrI	CTTAAG	1 cut(s)	2453
BfuAI	ACCTGC	1 cut(s)	1259
BfuI	GTATCC	2 cut(s)	1100, 2328
BglI	GCCNNNNNGGC	1 cut(s)	2141
BlpI	GCTNAGC	2 cut(s)	1311, 4522
BmcAI	AGTACT	2 cut(s)	2451, 2656
Bme1390I	CCNGG	6 cut(s)	282, 1571, 2222, 2347, 2646, 3314
Bme18I	GGWCC	3 cut(s)	1363, 1752, 1861
BmeT110I	CYCGRG	2 cut(s)	199, 4472
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	5 cut(s)	1043, 1363, 1752, 1861, 3666
BmiI	GGNNCC	6 cut(s)	664, 1753, 1794, 3311, 3508, 3963
BmrFI	CCNGG	6 cut(s)	282, 1571, 2222, 2347, 2646, 3314
BmrI	ACTGGG	1 cut(s)	523
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	3 cut(s)	97, 2055, 2383
BplI	GAGNNNNNCTC	2 cut(s)	4439, 4471
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	70
Bpu1102I	GCTNAGC	2 cut(s)	1311, 4522
Bpu14I	TTCGAA	2 cut(s)	912, 958
BpuEI	CTTGAG	5 cut(s)	766, 1261, 1818, 3045, 4035
BpuMI	CCSGG	2 cut(s)	282, 3314
Bsa29I	ATCGAT	1 cut(s)	3987
BsaBI	GATNNNNATC	1 cut(s)	1433
BsaWI	WCCGGW	6 cut(s)	931, 952, 972, 1863, 2105, 4026
BsaXI	ACNNNNNCTCC	6 cut(s)	58, 88, 859, 889, 926, 956
Bsc4I	CCNNNNNNNGG	7 cut(s)	221, 850, 1103, 1576, 3516, 3797, 3971
Bse118I	RCCGGY	2 cut(s)	1360, 1863
Bse1I	ACTGG	8 cut(s)	459, 518, 673, 769, 926, 1165, 2419, 4503
Bse3DI	GCAATG	5 cut(s)	965, 1374, 3207, 3808, 4377
Bse8I	GATNNNNATC	1 cut(s)	1433
BseAI	TCCGGA	1 cut(s)	2105
BseBI	CCWGG	4 cut(s)	1571, 2222, 2347, 2646
BseCI	ATCGAT	1 cut(s)	3987
BseJI	GATNNNNATC	1 cut(s)	1433
BseLI	CCNNNNNNNGG	7 cut(s)	221, 850, 1103, 1576, 3516, 3797, 3971
BseMI	GCAATG	5 cut(s)	965, 1374, 3207, 3808, 4377
BseNI	ACTGG	8 cut(s)	459, 518, 673, 769, 926, 1165, 2419, 4503
BseRI	GAGGAG	3 cut(s)	720, 950, 2795
BseSI	GKGCMC	3 cut(s)	1685, 3775, 4498
BseYI	CCCAGC	2 cut(s)	1748, 1962
BsgI	GTGCAG	1 cut(s)	1428
Bsh1236I	CGCG	4 cut(s)	219, 1261, 2033, 2301
BshNI	GGYRCC	1 cut(s)	3309
BshTI	ACCGGT	1 cut(s)	1863
BshVI	ATCGAT	1 cut(s)	3987
BsiHKAI	GWGCWC	7 cut(s)	133, 274, 1160, 1674, 1685, 2636, 3231
BsiHKCI	CYCGRG	2 cut(s)	199, 4472
BslFI	GGGAC	8 cut(s)	264, 1480, 1765, 2056, 2140, 2182, 3628, 4263
BslI	CCNNNNNNNGG	7 cut(s)	221, 850, 1103, 1576, 3516, 3797, 3971
BsmAI	GTCTC	2 cut(s)	716, 2874
BsmFI	GGGAC	8 cut(s)	264, 1480, 1765, 2056, 2140, 2182, 3628, 4263
BsmI	GAATGC	2 cut(s)	3478, 3876
BsoBI	CYCGRG	2 cut(s)	199, 4472
Bsp119I	TTCGAA	2 cut(s)	912, 958
Bsp1286I	GDGCHC	9 cut(s)	133, 274, 1160, 1674, 1685, 2636, 3231, 3775, 4498
Bsp13I	TCCGGA	1 cut(s)	2105
Bsp1407I	TGTACA	3 cut(s)	1227, 1392, 4364
Bsp1720I	GCTNAGC	2 cut(s)	1311, 4522
Bsp19I	CCATGG	2 cut(s)	389, 2613
BspDI	ATCGAT	1 cut(s)	3987
BspEI	TCCGGA	1 cut(s)	2105
BspFNI	CGCG	4 cut(s)	219, 1261, 2033, 2301
BspHI	TCATGA	3 cut(s)	2523, 3576, 4018
BspLI	GGNNCC	6 cut(s)	664, 1753, 1794, 3311, 3508, 3963
BspMAI	CTGCAG	2 cut(s)	1338, 1791
BspMI	ACCTGC	1 cut(s)	1259
BspPI	GGATC	9 cut(s)	26, 657, 670, 2059, 2425, 2899, 2951, 4049, 4088
BspQI	GCTCTTC	1 cut(s)	4124
BspT104I	TTCGAA	2 cut(s)	912, 958
BspT107I	GGYRCC	1 cut(s)	3309
BspTI	CTTAAG	1 cut(s)	2453
BsrBI	CCGCTC	1 cut(s)	4521
BsrDI	GCAATG	5 cut(s)	965, 1374, 3207, 3808, 4377
BsrFI	RCCGGY	2 cut(s)	1360, 1863
BsrGI	TGTACA	3 cut(s)	1227, 1392, 4364
BsrI	ACTGG	8 cut(s)	459, 518, 673, 769, 926, 1165, 2419, 4503
BssAI	RCCGGY	2 cut(s)	1360, 1863
BssSI	CACGAG	2 cut(s)	31, 3336
BssT1I	CCWWGG	5 cut(s)	389, 2083, 2613, 3450, 3849
Bst2BI	CACGAG	2 cut(s)	31, 3336
Bst2UI	CCWGG	4 cut(s)	1571, 2222, 2347, 2646
Bst6I	CTCTTC	5 cut(s)	1977, 2695, 2772, 4113, 4124
BstAFI	CTTAAG	1 cut(s)	2453
BstAUI	TGTACA	3 cut(s)	1227, 1392, 4364
BstBI	TTCGAA	2 cut(s)	912, 958
BstDSI	CCRYGG	4 cut(s)	217, 389, 2613, 4296
BstFNI	CGCG	4 cut(s)	219, 1261, 2033, 2301
BstH2I	RGCGCY	2 cut(s)	3374, 4144
BstHHI	GCGC	6 cut(s)	1261, 2301, 2602, 3373, 4143, 4269
BstMAI	GTCTC	2 cut(s)	716, 2874
BstNI	CCWGG	4 cut(s)	1571, 2222, 2347, 2646
BstNSI	RCATGY	2 cut(s)	1198, 4365
BstSCI	CCNGG	6 cut(s)	280, 1569, 2220, 2345, 2644, 3312
BstSFI	CTRYAG	3 cut(s)	1334, 1787, 3821
BstSLI	GKGCMC	3 cut(s)	1685, 3775, 4498
BstUI	CGCG	4 cut(s)	219, 1261, 2033, 2301
BstV2I	GAAGAC	3 cut(s)	97, 2055, 2383
BstX2I	RGATCY	2 cut(s)	662, 2051
BstXI	CCANNNNNNTGG	1 cut(s)	3294
BstYI	RGATCY	2 cut(s)	662, 2051
Bsu15I	ATCGAT	1 cut(s)	3987
BsuI	GTATCC	2 cut(s)	1100, 2328
BsuTUI	ATCGAT	1 cut(s)	3987
BtgI	CCRYGG	4 cut(s)	217, 389, 2613, 4296
BtgZI	GCGATG	2 cut(s)	157, 4467
BtrI	CACGTC	1 cut(s)	24
BtsI	GCAGTG	2 cut(s)	1431, 1716
BtsIMutI	CAGTG	7 cut(s)	666, 1431, 1716, 2401, 3222, 4404, 4496
BveI	ACCTGC	1 cut(s)	1259
CciI	TCATGA	3 cut(s)	2523, 3576, 4018
CfoI	GCGC	6 cut(s)	1261, 2301, 2602, 3373, 4143, 4269
Cfr10I	RCCGGY	2 cut(s)	1360, 1863
Cfr13I	GGNCC	5 cut(s)	1043, 1363, 1752, 1861, 3666
Cfr42I	CCGCGG	1 cut(s)	220
ClaI	ATCGAT	1 cut(s)	3987
CseI	GACGC	1 cut(s)	298
CspAI	ACCGGT	1 cut(s)	1863
CspCI	CAANNNNNGTGG	2 cut(s)	2296, 2331
DraIII	CACNNNGTG	1 cut(s)	33
DrdI	GACNNNNNNGTC	1 cut(s)	3824
DseDI	GACNNNNNNGTC	1 cut(s)	3824
EaeI	YGGCCR	6 cut(s)	78, 519, 2733, 3263, 3788, 4197
Eam1104I	CTCTTC	5 cut(s)	1977, 2695, 2772, 4113, 4124
EarI	CTCTTC	5 cut(s)	1977, 2695, 2772, 4113, 4124
Ecl136II	GAGCTC	2 cut(s)	131, 272
Eco130I	CCWWGG	5 cut(s)	389, 2083, 2613, 3450, 3849
Eco24I	GRGCYC	2 cut(s)	133, 274
Eco32I	GATATC	2 cut(s)	2676, 3833
Eco47I	GGWCC	3 cut(s)	1363, 1752, 1861
Eco47III	AGCGCT	1 cut(s)	4142
Eco53kI	GAGCTC	2 cut(s)	131, 272
Eco57I	CTGAAG	5 cut(s)	759, 2377, 2916, 3951, 4287
Eco88I	CYCGRG	2 cut(s)	199, 4472
EcoICRI	GAGCTC	2 cut(s)	131, 272
EcoO109I	RGGNCCY	1 cut(s)	1043
EcoRII	CCWGG	4 cut(s)	1569, 2220, 2345, 2644
EcoRV	GATATC	2 cut(s)	2676, 3833
EcoT14I	CCWWGG	5 cut(s)	389, 2083, 2613, 3450, 3849
EcoT38I	GRGCYC	2 cut(s)	133, 274
ErhI	CCWWGG	5 cut(s)	389, 2083, 2613, 3450, 3849
FaqI	GGGAC	8 cut(s)	264, 1480, 1765, 2056, 2140, 2182, 3628, 4263
FauI	CCCGC	4 cut(s)	224, 501, 2117, 3964
FauNDI	CATATG	1 cut(s)	4001
FbaI	TGATCA	4 cut(s)	1017, 1560, 3160, 3579
FriOI	GRGCYC	2 cut(s)	133, 274
FspBI	CTAG	4 cut(s)	1886, 2861, 3533, 4032
FspI	TGCGCA	1 cut(s)	2601
GlaI	GCGC	6 cut(s)	1260, 2300, 2601, 3372, 4142, 4268
GsaI	CCCAGC	2 cut(s)	1752, 1966
GsuI	CTGGAG	1 cut(s)	576
HaeII	RGCGCY	2 cut(s)	3374, 4144
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	6 cut(s)	1261, 2301, 2602, 3373, 4143, 4269
Hin6I	GCGC	6 cut(s)	1259, 2299, 2600, 3371, 4141, 4267
HinP1I	GCGC	6 cut(s)	1259, 2299, 2600, 3371, 4141, 4267
HincII	GTYRAC	2 cut(s)	2491, 4309
HindII	GTYRAC	2 cut(s)	2491, 4309
Hpy99I	CGWCG	3 cut(s)	292, 3248, 3784
HpyCH4IV	ACGT	2 cut(s)	23, 861
HpySE526I	ACGT	2 cut(s)	23, 861
HspAI	GCGC	6 cut(s)	1259, 2299, 2600, 3371, 4141, 4267
Kpn2I	TCCGGA	1 cut(s)	2105
KpnI	GGTACC	1 cut(s)	3313
Ksp22I	TGATCA	4 cut(s)	1017, 1560, 3160, 3579
KspI	CCGCGG	1 cut(s)	220
LguI	GCTCTTC	1 cut(s)	4124
MaeI	CTAG	4 cut(s)	1886, 2861, 3533, 4032
MaeII	ACGT	2 cut(s)	23, 861
MaeIII	GTNAC	8 cut(s)	46, 338, 760, 2366, 2476, 3034, 3317, 3731
MbiI	CCGCTC	1 cut(s)	4521
MfeI	CAATTG	2 cut(s)	2172, 3039
MflI	RGATCY	2 cut(s)	662, 2051
MhlI	GDGCHC	9 cut(s)	133, 274, 1160, 1674, 1685, 2636, 3231, 3775, 4498
MlsI	TGGCCA	3 cut(s)	521, 3265, 3790
MluNI	TGGCCA	3 cut(s)	521, 3265, 3790
MlyI	GAGTC	6 cut(s)	43, 307, 435, 1625, 4304, 4448
MmeI	TCCRAC	6 cut(s)	890, 942, 1258, 1599, 1839, 3803
Mox20I	TGGCCA	3 cut(s)	521, 3265, 3790
MroI	TCCGGA	1 cut(s)	2105
MroXI	GAANNNNTTC	1 cut(s)	2062
MscI	TGGCCA	3 cut(s)	521, 3265, 3790
Msp20I	TGGCCA	3 cut(s)	521, 3265, 3790
MspA1I	CMGCKG	4 cut(s)	219, 2731, 2996, 3971
MspCI	CTTAAG	1 cut(s)	2453
MspR9I	CCNGG	6 cut(s)	282, 1571, 2222, 2347, 2646, 3314
MunI	CAATTG	2 cut(s)	2172, 3039
Mva1269I	GAATGC	2 cut(s)	3478, 3876
MvaI	CCWGG	4 cut(s)	1571, 2222, 2347, 2646
MvnI	CGCG	4 cut(s)	219, 1261, 2033, 2301
NciI	CCSGG	2 cut(s)	282, 3314
NcoI	CCATGG	2 cut(s)	389, 2613
NdeI	CATATG	1 cut(s)	4001
NlaIV	GGNNCC	6 cut(s)	664, 1753, 1794, 3311, 3508, 3963
NmeAIII	GCCGAG	4 cut(s)	1170, 1235, 1637, 2659
NmuCI	GTSAC	4 cut(s)	46, 760, 2366, 3034
NsbI	TGCGCA	1 cut(s)	2601
NspI	RCATGY	2 cut(s)	1198, 4365
NspV	TTCGAA	2 cut(s)	912, 958
OliI	CACNNNNGTG	2 cut(s)	347, 1424
PaeI	GCATGC	1 cut(s)	1198
PaeR7I	CTCGAG	2 cut(s)	199, 4472
PagI	TCATGA	3 cut(s)	2523, 3576, 4018
PciSI	GCTCTTC	1 cut(s)	4124
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 3993, 4325
PctI	GAATGC	2 cut(s)	3478, 3876
PdmI	GAANNNNTTC	1 cut(s)	2062
PflMI	CCANNNNNTGG	2 cut(s)	3516, 3797
PfoI	TCCNGGA	1 cut(s)	280
PinAI	ACCGGT	1 cut(s)	1863
PleI	GAGTC	6 cut(s)	43, 307, 435, 1624, 4304, 4448
PpsI	GAGTC	6 cut(s)	43, 307, 435, 1624, 4304, 4448
Psp124BI	GAGCTC	2 cut(s)	133, 274
Psp6I	CCWGG	4 cut(s)	1569, 2220, 2345, 2644
PspFI	CCCAGC	2 cut(s)	1748, 1962
PspGI	CCWGG	4 cut(s)	1569, 2220, 2345, 2644
PspN4I	GGNNCC	6 cut(s)	664, 1753, 1794, 3311, 3508, 3963
PspPI	GGNCC	5 cut(s)	1043, 1363, 1752, 1861, 3666
PspXI	VCTCGAGB	1 cut(s)	199
PstI	CTGCAG	2 cut(s)	1338, 1791
PsuI	RGATCY	2 cut(s)	662, 2051
PvuII	CAGCTG	2 cut(s)	2731, 2996
SacI	GAGCTC	2 cut(s)	133, 274
SacII	CCGCGG	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	4124
Sau96I	GGNCC	5 cut(s)	1043, 1363, 1752, 1861, 3666
ScaI	AGTACT	2 cut(s)	2451, 2656
SchI	GAGTC	6 cut(s)	43, 307, 435, 1625, 4304, 4448
ScrFI	CCNGG	6 cut(s)	282, 1571, 2222, 2347, 2646, 3314
SduI	GDGCHC	9 cut(s)	133, 274, 1160, 1674, 1685, 2636, 3231, 3775, 4498
SfcI	CTRYAG	3 cut(s)	1334, 1787, 3821
Sfr274I	CTCGAG	2 cut(s)	199, 4472
Sfr303I	CCGCGG	1 cut(s)	220
SfuI	TTCGAA	2 cut(s)	912, 958
SgrBI	CCGCGG	1 cut(s)	220
SinI	GGWCC	3 cut(s)	1363, 1752, 1861
SlaI	CTCGAG	2 cut(s)	199, 4472
SmlI	CTYRAG	8 cut(s)	199, 745, 1240, 1833, 2453, 3060, 4050, 4472
SmoI	CTYRAG	8 cut(s)	199, 745, 1240, 1833, 2453, 3060, 4050, 4472
SpeI	ACTAGT	1 cut(s)	1885
SphI	GCATGC	1 cut(s)	1198
SspI	AATATT	2 cut(s)	2427, 3616
SspMI	CTAG	4 cut(s)	1886, 2861, 3533, 4032
SstI	GAGCTC	2 cut(s)	133, 274
StyD4I	CCNGG	6 cut(s)	280, 1569, 2220, 2345, 2644, 3312
StyI	CCWWGG	5 cut(s)	389, 2083, 2613, 3450, 3849
TaiI	ACGT	2 cut(s)	26, 864
TatI	WGTACW	9 cut(s)	1227, 1392, 1647, 2449, 2542, 2556, 2654, 3655, 4364
TauI	GCSGC	3 cut(s)	222, 225, 2304
TscAI	CASTG	7 cut(s)	673, 1431, 1723, 2401, 3229, 4404, 4503
TseFI	GTSAC	4 cut(s)	46, 760, 2366, 3034
Tsp45I	GTSAC	4 cut(s)	46, 760, 2366, 3034
TspGWI	ACGGA	4 cut(s)	517, 2769, 3518, 4334
TspRI	CASTG	7 cut(s)	673, 1431, 1723, 2401, 3229, 4404, 4503
Van91I	CCANNNNNTGG	2 cut(s)	3516, 3797
Vha464I	CTTAAG	1 cut(s)	2453
VneI	GTGCAC	1 cut(s)	1681
VpaK11BI	GGWCC	3 cut(s)	1363, 1752, 1861
XapI	RAATTY	3 cut(s)	1782, 3138, 4530
XbaI	TCTAGA	1 cut(s)	3532
XceI	RCATGY	2 cut(s)	1198, 4365
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3484, 3517
XhoI	CTCGAG	2 cut(s)	199, 4472
XmnI	GAANNNNTTC	1 cut(s)	2062
XspI	CTAG	4 cut(s)	1886, 2861, 3533, 4032
ZrmI	AGTACT	2 cut(s)	2451, 2656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.