Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005776

Physical Location & Seq

Genomic Coordinates Forward (+)

54663974 .. 54670949

Gene Structure 6976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G030560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4539 bp

ATGGCTTCTGGGTCTTGGATCACGTCCACCTCGTGTTCCTCGCCCGTGACTCAATCCCAAGACGACACCTCAGCTCCGGCCATCTTCCAATGGCTGAGATTCGTCTTCCTCTCCCCCTGTCCCCAGAGAGCTCTGTTATCCTCCATTGATCTCTTGTTCCTGCTCACCCTCATCGCCTTCTCAATCCAAAAGCTCTACTCGAGGTTCACCTCCCCCCGCGGCGGCAGCAGCAGCAGCTCGGAACTCGATAAGCCGTTGATAACAAACAGCAGAGCTCGCCGTCCCGGAACGACGCTCTGTTTCAAGCTCTCTCTGACTCTCAGCGTTTTCTTGACACTCTGCTACACCGTAGTGTGCATTTTCGTGTTTACAAGAGGAAGTCCTGACTTCCCATGGAAGATCATAGATGGGTTGTTTTGGCTGGTGCAAGCTATAACTCATGGACTCATTACGGTACTGGTGGCACATGAAAAGAGATTTGAAGCTGTCAAGCACCCGCTTTCGCTTCGTATTTACTGGGTGGCCAATTCCGTTGCTGTTTCTCTGTTTGCAACTTCTGGAGTGATTCGTTTGGTTTACAGTGAAGGAGGTTTGAGATTGGATGATGTAGTTTCCATTGTGTCTTTTCCTTTATCGGCTGTTCTTGCTGTTGTTGCGGTTAGAGGATCCACTGGCATTAGAGTGATGAACAGAGAACAATCTAATGGAGGAGAAAACGGTGTGGAGACTAAATTGCATGAACCCCTCTTGAGCAAATCCAATGTGACTGGTTTTGCTTCAGCTTCATTCATTAATAAAACCTTTTGGGTCTGGATGAATCCTCTGCTCAGTAAAGGGTACAAATCCCCCTTGAAGGTTGATGACGTTCCAACACTTGCTCCACAACACAGAGCCGAAAGAATGTCGGTGATTTTCGAATCCAACTGGCCTAAACCGGAGGAGAAGTCAGAGCATCCGGTTCGAACCACATTGCTCCGGTGCTTCTGGAAAGAAATTGCGTTCACAGCTTCTCTTGCGGTGATCAGGCTGTGTGTCATGTATGTAGGGCCTGTGCTTATCCAGAGCTTTGTGGATTTCACTAATGGGAAACGAAGCTCGCCGTTTGAGGGATACTTCCTTGTGTTGATTCTTCTGTGTGCTAAGTTCGTTGAGGTTTTGAGCACTCACCAGTTCAATTTCAACTCACAGAAACTCGGCATGCTCATAAGATCAACTCTCATAACTTCTCTGTACAGGAAGGGCTTGAGGCTGACCTGCTCGGCGAGACAAGCTCATGGTGTTGGACAGATTGTGAATTACATGGCTGTGGATGCTCAGCAGCTCTCTGACATGATGCTGCAGCTTCATGCTATATGGATGATGCCGGTCCAGCTCACCATTGCTTTAATCCTGCTGTACAACAACCTCGGTGCAGCTACAATCACAGCAGTGATTGGAATCATGGGTGTGCTTGTGTTTGTGGTGTTTGGGACGAGAAGGAACAACAGGTTTCAGTTCAATCTGATGAAGCAAAGGGATTCGAGGATGAAGGCGACAAACGAGATGCTTAACTACATGAGGGTGATCAAGTTCCAGGCTTGGGAGGAACACTTCAACAAGAGGATTCAGACTTTTCGTGAGTCGGAGTTTAGCTGGCTGACCAAGTTCATGTACTCCATCTCGGCTAATGTTGTGCTCATGTGGTGCACTCCCATACTTATATCAACCCTCACATTTGCCACTGCCTTGTATTTGGGTGTCAAACTTGATGCTGGGACCGTGTTCACTACCACAACCATTTTCAAAATTCTGCAGGAGCCTATTAGGACATTCCCACAATCTATGATTTCAATTTCTCAAGCTATGATCTCGCTTGGGAGGTTGGACCGGTATATGAGTAGTAGGGAACTGGTGGAGGGTTCGGTTGAGAGAGAAGAAGGTTGTGATAGTAGTGTCGCTGTGGAGGTTAAGAATGGTGCATTTAGCTGGGATGATGAAAGTAATGAAGAGGTTTTGAAGAATATAAACTTGACTATCAACAAAGGTGAGCTAACCGCGATTGTTGGGACAGTAGGATCTGGAAAGTCTTCCCTGCTGGCCTCAATCCTTGGTGAGATGCACAAATTATCCGGAAAGGTAAAAGTTTGCGGGACAACTGCCTATGTGGCTCAAACATCATGGATTCAAAATGGGACAATTGAAGAAAACATCCTATTTGGTTTGCCAATGGACAGAGCGAGATACCAGGAAGTTATGAGGGTCTGTTGCTTGGAAAAGGACATGGAAATGATGGAGTATGGAGATCAAACTGAAATAGGAGAGCGCGGCATCAACCTAAGTGGTGGACAGAAACAAAGGATACAGCTTGCCAGGGCAGTATATCAGGACTGTGACATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACCGGATCAGAAATATTCAAGGAATGTGTACGGGGAGTACTTAAGAACAAGACCATTTTACTTGTAACCCATCAAGTTGACTTCTTGCATAATGTTGATCTTATTGTGGTCATGAGAGAAGGAATGATAGTACAAGCAGGAAAGTACAACGATTTGTTAAGCCTCGATTTCAAAGCACTTGTAGTTGCGCATGAAAGCTCCATGGAGCTTGTAGAAATGAGCACAGCTATGCCTGGTGAAAGTACTTCTCCCAAACCACAGATATCTCGGCAGTCCTCTTCAAAACATGGAGAAGCCAATGGCGAAAATAACTCTCAGCTGGTCGAACCCAAGTCCAAAGACGGAACATCTAAGCTCATCAAAGAAGAGGAGAAAGAATCAGGCAAAGTCAGCTTGCAGAATTACAAAATCTATTGCACAGAGGCTTTTGGATGGTGGGGTGTGGTGCTAGTGTTGTCTCTCTCTCTTTTGTGGCAAGGATCACTAATGGCTGGTGATTATTGGCTGGCCTATGAAACTTCAGAAAAGCGAGCATTGTCATTCGATCCTTCTGTGTTCATTACTGTCTATGCTATTATCGCAGCTGTTTCATTCTTCGTGGTATTGGTAAGAGCATTTTCTGTGACAATTGTGGGGCTTACAACAGCTCAAGTTTTCTTCAAGCAGATTCTTCACAGCATCCTTCATGCCCCCATGTCATTTTTCGATACTACACCTTCTGGAAGAATTTTGAGTAGGGCATCAACTGATCAGACGAATATCGACTTATTTCTTCCCTTCATTTTGGGCATTACCATTGCCATGTATATCACTGTGCTCAGTATCTTTATCGTCGTATGTCAAAACTCATGGCCAACAATCTTCTTACTCATACCACTTCTTTGGCTGAATATCTGGTACCGGGGTTATTATCTTGCATCATCTCGTGAATTAACTCGACTTGATTCAATCACAAAAGCGCCTGTTATCCATCATTTCTCAGAAAGCATATCTGGGGTTATGACAATCCGATCTTTCAGAAACCAGAACAAGTTTACCAAGGAAAATGTTAGGAGAGTGAATGCCAATTTGCGTATGGATTTCCACAATAACGGCTCCAATGAGTGGTTGGGATTCCGTCTGGAACTGCTTGGGAGCTTAATCCTCTGCATTTCCACTTTGTTCATGATCATGCTGCCAAGCAGTATAGTAAAGCCAGAGAATATTGGCTTATCACTCTCCTATGGATTGTCCCTCAACGGTGTACTATTTTGGGCCATATATATGAGCTGCTTCGTAGAAAATAGGATGGTGTCAGTTGAGAGGATAAAGCAGTTTTGTAACATTCCATCAGAAGCAGCATGGAAGATAGTAGATCGTGCCCCTCCTACGAATTGGCCAACTCATGGCAATGTTGAGCTGAAAGACTTGCAGGTCAGATATCGTCCGAATACTCCCTTGGTTCTCAAAGGCATTAGTCTGAGCATTCATGGGGGTGAGAAGGTCGGTGTTGTTGGTCGAACGGGGAGTGGGAAATCCACTTTAATTCAGGTGTTCTTTAGGCTGGTGGAACCTTCAGCGGGAAAAATTATCATCGATGGCATCGACATATGCACGATAGGGCTTCATGATCTCCGGTCTAGCTTTGGGATCATTCCTCAAGAACCTGTCCTTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATCGGGGTGTATTCAGATGAAGAGATTTGGAAGAGCTTGGAGCGCTGCCAACTTAAAGATGTTGTTGCTGCAAAACCCAAAAAACTCGATGCTTTAGTGGCCGATGATGGAGATAATTGGAGCGTGGGGCAAAGACAACTTCTTTGTTTGGGACGAGTTATGTTAAAGCGCAGCAGGCTGTTGTTCATGGATGAGGCCACGGCTTCAGTTGACTCACAGACGGATGCTGCGATACAAAAGATCATCAGAGAGGACTTTGCTGCATGTACAATCATCAGCATTGCTCACAGAATACCAACAGTGATGGACTGCAATAGAGTTTTAGTAGTAGATGCAGGAAGGGCTAAAGAGTTTGACTCACCAACACACTTGCTCGAGAGGCCATCGCTGTTTGGGGCACTGGTTCAGGAGTATGCCAACCGCTCAGCAGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009624 GO:0009628 GO:0009987 GO:0010035 GO:0010118 GO:0012505 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1512

Amino Acids

168.94

Weight (kDa)

8.58

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	337 - 600	8.3e-25	ABC transporter transmembrane region
ABC_tran	PF00005	665 - 798	2.2e-21	ABC transporter
ABC_membrane	PF00664	986 - 1197	3.9e-30	ABC transporter transmembrane region
ABC_tran	PF00005	1287 - 1435	4.1e-26	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47800 AT3G62700
fragaria_vesca	FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570
malus_domestica	MD03G1286300.v1.1 MD11G1313300.v1.1 MD11G1313800.v1.1 MD11G1314300.v1.1
prunus_persica	Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1
pyrus_communis	pycom03g22680 pycom03g22690 pycom11g27270
rosa_chinensis	RchiOBHm_Chr6g0293781
rosa_laevigata	RLG00000011924
rosa_multiflora	Rmu_sc0005641.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173910
rosa_rugosa	Rorug06G0238000
rosa_samantha	Rh6AG351300 Rh6BG358200 Rh6DG352000
rosa_wichuraiana	Rw6G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3827
Acc16I	TGCGCA	1 cut(s)	2604
Acc36I	ACCTGC	2 cut(s)	1262, 3817
Acc65I	GGTACC	1 cut(s)	3312
AccB1I	GGYRCC	1 cut(s)	3312
AccB7I	CCANNNNNTGG	2 cut(s)	3519, 3800
AccBSI	CCGCTC	1 cut(s)	4524
AccII	CGCG	3 cut(s)	219, 2036, 2304
AccIII	TCCGGA	1 cut(s)	2108
AclWI	GGATC	9 cut(s)	26, 660, 673, 2062, 2428, 2902, 2954, 4052, 4091
AcoI	YGGCCR	5 cut(s)	78, 522, 3266, 3791, 4200
AcsI	RAATTY	3 cut(s)	1785, 3141, 4533
AcuI	CTGAAG	5 cut(s)	762, 2380, 2919, 3954, 4290
AdeI	CACNNNGTG	1 cut(s)	33
AfeI	AGCGCT	1 cut(s)	4145
AfiI	CCNNNNNNNGG	7 cut(s)	221, 853, 1106, 1579, 3519, 3800, 3974
AflII	CTTAAG	1 cut(s)	2456
AgeI	ACCGGT	1 cut(s)	1866
AjiI	CACGTC	1 cut(s)	24
AjnI	CCWGG	4 cut(s)	1572, 2223, 2348, 2647
AjuI	GAANNNNNNNTTGG	2 cut(s)	3836, 3868
AleI	CACNNNNGTG	2 cut(s)	350, 1427
Alw21I	GWGCWC	7 cut(s)	133, 277, 1163, 1677, 1688, 2639, 3234
Alw26I	GTCTC	3 cut(s)	719, 1258, 2877
Alw44I	GTGCAC	1 cut(s)	1684
AlwI	GGATC	9 cut(s)	26, 660, 673, 2062, 2428, 2902, 2954, 4052, 4091
Ama87I	CYCGRG	2 cut(s)	199, 4475
Aor13HI	TCCGGA	1 cut(s)	2108
Aor51HI	AGCGCT	1 cut(s)	4145
ApaLI	GTGCAC	1 cut(s)	1684
ApoI	RAATTY	3 cut(s)	1785, 3141, 4533
ArsI	GACNNNNNNTTYG	2 cut(s)	4227, 4259
AseI	ATTAAT	1 cut(s)	792
AsiGI	ACCGGT	1 cut(s)	1866
Asp700I	GAANNNNTTC	1 cut(s)	2065
Asp718I	GGTACC	1 cut(s)	3312
AspLEI	GCGC	5 cut(s)	2304, 2605, 3376, 4146, 4272
AspS9I	GGNCC	5 cut(s)	1046, 1366, 1755, 1864, 3669
AsuC2I	CCSGG	2 cut(s)	285, 3317
AsuII	TTCGAA	2 cut(s)	915, 961
AvaI	CYCGRG	2 cut(s)	199, 4475
AvaII	GGWCC	3 cut(s)	1366, 1755, 1864
BaeGI	GKGCMC	3 cut(s)	1688, 3778, 4501
BaeI	ACNNNNGTAYC	2 cut(s)	3304, 3337
BalI	TGGCCA	3 cut(s)	524, 3268, 3793
BamHI	GGATCC	1 cut(s)	665
BanI	GGYRCC	1 cut(s)	3312
BanII	GRGCYC	2 cut(s)	133, 277
BauI	CACGAG	2 cut(s)	31, 3339
BbsI	GAAGAC	3 cut(s)	97, 2058, 2386
Bbv12I	GWGCWC	7 cut(s)	133, 277, 1163, 1677, 1688, 2639, 3234
BbvCI	CCTCAGC	1 cut(s)	70
BceAI	ACGGC	5 cut(s)	238, 264, 1084, 3523, 4317
BcgI	CGANNNNNNTGC	2 cut(s)	941, 975
BciT130I	CCWGG	4 cut(s)	1574, 2225, 2350, 2649
BciVI	GTATCC	2 cut(s)	1103, 2331
BclI	TGATCA	4 cut(s)	1020, 1563, 3163, 3582
BcnI	CCSGG	2 cut(s)	285, 3317
BcoDI	GTCTC	3 cut(s)	719, 1258, 2877
BfaI	CTAG	2 cut(s)	2864, 4035
BfmI	CTRYAG	2 cut(s)	1337, 1790
BfoI	RGCGCY	2 cut(s)	3377, 4147
BfrI	CTTAAG	1 cut(s)	2456
BfuAI	ACCTGC	2 cut(s)	1262, 3817
BfuI	GTATCC	2 cut(s)	1103, 2331
BglI	GCCNNNNNGGC	1 cut(s)	2144
BlpI	GCTNAGC	2 cut(s)	1314, 4525
BmcAI	AGTACT	2 cut(s)	2454, 2659
Bme1390I	CCNGG	6 cut(s)	285, 1574, 2225, 2350, 2649, 3317
Bme18I	GGWCC	3 cut(s)	1366, 1755, 1864
BmeT110I	CYCGRG	2 cut(s)	199, 4475
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	5 cut(s)	1046, 1366, 1755, 1864, 3669
BmiI	GGNNCC	6 cut(s)	667, 1756, 1797, 3314, 3511, 3966
BmrFI	CCNGG	6 cut(s)	285, 1574, 2225, 2350, 2649, 3317
BmrI	ACTGGG	1 cut(s)	526
BmuI	ACTGGG	1 cut(s)	526
BpiI	GAAGAC	3 cut(s)	97, 2058, 2386
BplI	GAGNNNNNCTC	4 cut(s)	1255, 1287, 4442, 4474
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	70
Bpu1102I	GCTNAGC	2 cut(s)	1314, 4525
Bpu14I	TTCGAA	2 cut(s)	915, 961
BpuEI	CTTGAG	5 cut(s)	769, 1264, 1821, 3048, 4038
BpuMI	CCSGG	2 cut(s)	285, 3317
Bsa29I	ATCGAT	1 cut(s)	3990
BsaBI	GATNNNNATC	1 cut(s)	1436
BsaWI	WCCGGW	7 cut(s)	934, 955, 975, 1866, 2108, 2417, 4029
BsaXI	ACNNNNNCTCC	6 cut(s)	58, 88, 862, 892, 929, 959
Bsc4I	CCNNNNNNNGG	7 cut(s)	221, 853, 1106, 1579, 3519, 3800, 3974
Bse118I	RCCGGY	2 cut(s)	1363, 1866
Bse1I	ACTGG	8 cut(s)	462, 521, 676, 772, 929, 1168, 1893, 4506
Bse3DI	GCAATG	5 cut(s)	968, 1377, 3210, 3811, 4380
Bse8I	GATNNNNATC	1 cut(s)	1436
BseAI	TCCGGA	1 cut(s)	2108
BseBI	CCWGG	4 cut(s)	1574, 2225, 2350, 2649
BseCI	ATCGAT	1 cut(s)	3990
BseJI	GATNNNNATC	1 cut(s)	1436
BseLI	CCNNNNNNNGG	7 cut(s)	221, 853, 1106, 1579, 3519, 3800, 3974
BseMI	GCAATG	5 cut(s)	968, 1377, 3210, 3811, 4380
BseNI	ACTGG	8 cut(s)	462, 521, 676, 772, 929, 1168, 1893, 4506
BseRI	GAGGAG	3 cut(s)	723, 953, 2798
BseSI	GKGCMC	3 cut(s)	1688, 3778, 4501
BseYI	CCCAGC	2 cut(s)	1751, 1965
BsgI	GTGCAG	1 cut(s)	1431
Bsh1236I	CGCG	3 cut(s)	219, 2036, 2304
BshNI	GGYRCC	1 cut(s)	3312
BshTI	ACCGGT	1 cut(s)	1866
BshVI	ATCGAT	1 cut(s)	3990
BsiHKAI	GWGCWC	7 cut(s)	133, 277, 1163, 1677, 1688, 2639, 3234
BsiHKCI	CYCGRG	2 cut(s)	199, 4475
BslFI	GGGAC	9 cut(s)	105, 267, 1483, 1768, 2059, 2143, 2185, 3631, 4266
BslI	CCNNNNNNNGG	7 cut(s)	221, 853, 1106, 1579, 3519, 3800, 3974
BsmAI	GTCTC	3 cut(s)	719, 1258, 2877
BsmFI	GGGAC	9 cut(s)	105, 267, 1483, 1768, 2059, 2143, 2185, 3631, 4266
BsmI	GAATGC	2 cut(s)	3481, 3879
BsoBI	CYCGRG	2 cut(s)	199, 4475
Bsp119I	TTCGAA	2 cut(s)	915, 961
Bsp1286I	GDGCHC	9 cut(s)	133, 277, 1163, 1677, 1688, 2639, 3234, 3778, 4501
Bsp13I	TCCGGA	1 cut(s)	2108
Bsp1407I	TGTACA	3 cut(s)	1230, 1395, 4367
Bsp1720I	GCTNAGC	2 cut(s)	1314, 4525
Bsp19I	CCATGG	2 cut(s)	392, 2616
BspDI	ATCGAT	1 cut(s)	3990
BspEI	TCCGGA	1 cut(s)	2108
BspFNI	CGCG	3 cut(s)	219, 2036, 2304
BspHI	TCATGA	3 cut(s)	2526, 3579, 4021
BspLI	GGNNCC	6 cut(s)	667, 1756, 1797, 3314, 3511, 3966
BspMAI	CTGCAG	2 cut(s)	1341, 1794
BspMI	ACCTGC	2 cut(s)	1262, 3817
BspPI	GGATC	9 cut(s)	26, 660, 673, 2062, 2428, 2902, 2954, 4052, 4091
BspQI	GCTCTTC	1 cut(s)	4127
BspT104I	TTCGAA	2 cut(s)	915, 961
BspT107I	GGYRCC	1 cut(s)	3312
BspTI	CTTAAG	1 cut(s)	2456
BsrBI	CCGCTC	1 cut(s)	4524
BsrDI	GCAATG	5 cut(s)	968, 1377, 3210, 3811, 4380
BsrFI	RCCGGY	2 cut(s)	1363, 1866
BsrGI	TGTACA	3 cut(s)	1230, 1395, 4367
BsrI	ACTGG	8 cut(s)	462, 521, 676, 772, 929, 1168, 1893, 4506
BssAI	RCCGGY	2 cut(s)	1363, 1866
BssSI	CACGAG	2 cut(s)	31, 3339
BssT1I	CCWWGG	5 cut(s)	392, 2086, 2616, 3453, 3852
Bst2BI	CACGAG	2 cut(s)	31, 3339
Bst2UI	CCWGG	4 cut(s)	1574, 2225, 2350, 2649
Bst6I	CTCTTC	5 cut(s)	1980, 2698, 2775, 4116, 4127
BstAFI	CTTAAG	1 cut(s)	2456
BstAUI	TGTACA	3 cut(s)	1230, 1395, 4367
BstBI	TTCGAA	2 cut(s)	915, 961
BstDSI	CCRYGG	4 cut(s)	217, 392, 2616, 4299
BstFNI	CGCG	3 cut(s)	219, 2036, 2304
BstH2I	RGCGCY	2 cut(s)	3377, 4147
BstHHI	GCGC	5 cut(s)	2304, 2605, 3376, 4146, 4272
BstMAI	GTCTC	3 cut(s)	719, 1258, 2877
BstNI	CCWGG	4 cut(s)	1574, 2225, 2350, 2649
BstNSI	RCATGY	2 cut(s)	1201, 4368
BstSCI	CCNGG	6 cut(s)	283, 1572, 2223, 2348, 2647, 3315
BstSFI	CTRYAG	2 cut(s)	1337, 1790
BstSLI	GKGCMC	3 cut(s)	1688, 3778, 4501
BstUI	CGCG	3 cut(s)	219, 2036, 2304
BstV2I	GAAGAC	3 cut(s)	97, 2058, 2386
BstX2I	RGATCY	2 cut(s)	665, 2054
BstXI	CCANNNNNNTGG	1 cut(s)	3297
BstYI	RGATCY	2 cut(s)	665, 2054
Bsu15I	ATCGAT	1 cut(s)	3990
BsuI	GTATCC	2 cut(s)	1103, 2331
BsuTUI	ATCGAT	1 cut(s)	3990
BtgI	CCRYGG	4 cut(s)	217, 392, 2616, 4299
BtgZI	GCGATG	2 cut(s)	157, 4470
BtrI	CACGTC	1 cut(s)	24
BtsI	GCAGTG	2 cut(s)	1434, 1719
BtsIMutI	CAGTG	8 cut(s)	586, 669, 1434, 1719, 2404, 3225, 4407, 4499
BveI	ACCTGC	2 cut(s)	1262, 3817
CciI	TCATGA	3 cut(s)	2526, 3579, 4021
CfoI	GCGC	5 cut(s)	2304, 2605, 3376, 4146, 4272
Cfr10I	RCCGGY	2 cut(s)	1363, 1866
Cfr13I	GGNCC	5 cut(s)	1046, 1366, 1755, 1864, 3669
Cfr42I	CCGCGG	1 cut(s)	220
ClaI	ATCGAT	1 cut(s)	3990
CseI	GACGC	1 cut(s)	301
CspAI	ACCGGT	1 cut(s)	1866
CspCI	CAANNNNNGTGG	2 cut(s)	2299, 2334
DraIII	CACNNNGTG	1 cut(s)	33
DrdI	GACNNNNNNGTC	1 cut(s)	3827
DseDI	GACNNNNNNGTC	1 cut(s)	3827
EaeI	YGGCCR	5 cut(s)	78, 522, 3266, 3791, 4200
Eam1104I	CTCTTC	5 cut(s)	1980, 2698, 2775, 4116, 4127
EarI	CTCTTC	5 cut(s)	1980, 2698, 2775, 4116, 4127
Ecl136II	GAGCTC	2 cut(s)	131, 275
Eco130I	CCWWGG	5 cut(s)	392, 2086, 2616, 3453, 3852
Eco24I	GRGCYC	2 cut(s)	133, 277
Eco32I	GATATC	2 cut(s)	2679, 3836
Eco47I	GGWCC	3 cut(s)	1366, 1755, 1864
Eco47III	AGCGCT	1 cut(s)	4145
Eco53kI	GAGCTC	2 cut(s)	131, 275
Eco57I	CTGAAG	5 cut(s)	762, 2380, 2919, 3954, 4290
Eco88I	CYCGRG	2 cut(s)	199, 4475
EcoICRI	GAGCTC	2 cut(s)	131, 275
EcoO109I	RGGNCCY	1 cut(s)	1046
EcoRII	CCWGG	4 cut(s)	1572, 2223, 2348, 2647
EcoRV	GATATC	2 cut(s)	2679, 3836
EcoT14I	CCWWGG	5 cut(s)	392, 2086, 2616, 3453, 3852
EcoT38I	GRGCYC	2 cut(s)	133, 277
ErhI	CCWWGG	5 cut(s)	392, 2086, 2616, 3453, 3852
FaqI	GGGAC	9 cut(s)	105, 267, 1483, 1768, 2059, 2143, 2185, 3631, 4266
FauI	CCCGC	4 cut(s)	224, 504, 2120, 3967
FauNDI	CATATG	1 cut(s)	4004
FbaI	TGATCA	4 cut(s)	1020, 1563, 3163, 3582
FriOI	GRGCYC	2 cut(s)	133, 277
FspBI	CTAG	2 cut(s)	2864, 4035
FspI	TGCGCA	1 cut(s)	2604
GlaI	GCGC	5 cut(s)	2303, 2604, 3375, 4145, 4271
GsaI	CCCAGC	2 cut(s)	1755, 1969
GsuI	CTGGAG	1 cut(s)	579
HaeII	RGCGCY	2 cut(s)	3377, 4147
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	5 cut(s)	2304, 2605, 3376, 4146, 4272
Hin6I	GCGC	5 cut(s)	2302, 2603, 3374, 4144, 4270
HinP1I	GCGC	5 cut(s)	2302, 2603, 3374, 4144, 4270
HincII	GTYRAC	2 cut(s)	2494, 4312
HindII	GTYRAC	2 cut(s)	2494, 4312
Hpy99I	CGWCG	2 cut(s)	295, 3251
HpyCH4IV	ACGT	2 cut(s)	23, 864
HpySE526I	ACGT	2 cut(s)	23, 864
HspAI	GCGC	5 cut(s)	2302, 2603, 3374, 4144, 4270
Kpn2I	TCCGGA	1 cut(s)	2108
KpnI	GGTACC	1 cut(s)	3316
Ksp22I	TGATCA	4 cut(s)	1020, 1563, 3163, 3582
KspI	CCGCGG	1 cut(s)	220
LguI	GCTCTTC	1 cut(s)	4127
MaeI	CTAG	2 cut(s)	2864, 4035
MaeII	ACGT	2 cut(s)	23, 864
MaeIII	GTNAC	6 cut(s)	46, 763, 2369, 2479, 3037, 3734
MbiI	CCGCTC	1 cut(s)	4524
MfeI	CAATTG	2 cut(s)	2175, 3042
MflI	RGATCY	2 cut(s)	665, 2054
MhlI	GDGCHC	9 cut(s)	133, 277, 1163, 1677, 1688, 2639, 3234, 3778, 4501
MlsI	TGGCCA	3 cut(s)	524, 3268, 3793
MluNI	TGGCCA	3 cut(s)	524, 3268, 3793
MlyI	GAGTC	6 cut(s)	43, 310, 438, 1628, 4307, 4451
MmeI	TCCRAC	5 cut(s)	893, 945, 1261, 1602, 1842
Mox20I	TGGCCA	3 cut(s)	524, 3268, 3793
MroI	TCCGGA	1 cut(s)	2108
MroXI	GAANNNNTTC	1 cut(s)	2065
MscI	TGGCCA	3 cut(s)	524, 3268, 3793
Msp20I	TGGCCA	3 cut(s)	524, 3268, 3793
MspA1I	CMGCKG	4 cut(s)	219, 2734, 2999, 3974
MspCI	CTTAAG	1 cut(s)	2456
MspR9I	CCNGG	6 cut(s)	285, 1574, 2225, 2350, 2649, 3317
MunI	CAATTG	2 cut(s)	2175, 3042
Mva1269I	GAATGC	2 cut(s)	3481, 3879
MvaI	CCWGG	4 cut(s)	1574, 2225, 2350, 2649
MvnI	CGCG	3 cut(s)	219, 2036, 2304
NciI	CCSGG	2 cut(s)	285, 3317
NcoI	CCATGG	2 cut(s)	392, 2616
NdeI	CATATG	1 cut(s)	4004
NlaIV	GGNNCC	6 cut(s)	667, 1756, 1797, 3314, 3511, 3966
NmeAIII	GCCGAG	4 cut(s)	1173, 1238, 1640, 2662
NmuCI	GTSAC	4 cut(s)	46, 763, 2369, 3037
NsbI	TGCGCA	1 cut(s)	2604
NspI	RCATGY	2 cut(s)	1201, 4368
NspV	TTCGAA	2 cut(s)	915, 961
OliI	CACNNNNGTG	2 cut(s)	350, 1427
PaeI	GCATGC	1 cut(s)	1201
PaeR7I	CTCGAG	2 cut(s)	199, 4475
PagI	TCATGA	3 cut(s)	2526, 3579, 4021
PciSI	GCTCTTC	1 cut(s)	4127
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 3996, 4328
PctI	GAATGC	2 cut(s)	3481, 3879
PdmI	GAANNNNTTC	1 cut(s)	2065
PflMI	CCANNNNNTGG	2 cut(s)	3519, 3800
PfoI	TCCNGGA	1 cut(s)	283
PinAI	ACCGGT	1 cut(s)	1866
PleI	GAGTC	6 cut(s)	43, 310, 438, 1627, 4307, 4451
PpsI	GAGTC	6 cut(s)	43, 310, 438, 1627, 4307, 4451
PshBI	ATTAAT	1 cut(s)	792
Psp124BI	GAGCTC	2 cut(s)	133, 277
Psp6I	CCWGG	4 cut(s)	1572, 2223, 2348, 2647
PspFI	CCCAGC	2 cut(s)	1751, 1965
PspGI	CCWGG	4 cut(s)	1572, 2223, 2348, 2647
PspN4I	GGNNCC	6 cut(s)	667, 1756, 1797, 3314, 3511, 3966
PspPI	GGNCC	5 cut(s)	1046, 1366, 1755, 1864, 3669
PspXI	VCTCGAGB	1 cut(s)	199
PstI	CTGCAG	2 cut(s)	1341, 1794
PsuI	RGATCY	2 cut(s)	665, 2054
PvuII	CAGCTG	2 cut(s)	2734, 2999
SacI	GAGCTC	2 cut(s)	133, 277
SacII	CCGCGG	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	4127
Sau96I	GGNCC	5 cut(s)	1046, 1366, 1755, 1864, 3669
ScaI	AGTACT	2 cut(s)	2454, 2659
SchI	GAGTC	6 cut(s)	43, 310, 438, 1628, 4307, 4451
ScrFI	CCNGG	6 cut(s)	285, 1574, 2225, 2350, 2649, 3317
SduI	GDGCHC	9 cut(s)	133, 277, 1163, 1677, 1688, 2639, 3234, 3778, 4501
SfcI	CTRYAG	2 cut(s)	1337, 1790
Sfr274I	CTCGAG	2 cut(s)	199, 4475
Sfr303I	CCGCGG	1 cut(s)	220
SfuI	TTCGAA	2 cut(s)	915, 961
SgrBI	CCGCGG	1 cut(s)	220
SinI	GGWCC	3 cut(s)	1366, 1755, 1864
SlaI	CTCGAG	2 cut(s)	199, 4475
SmlI	CTYRAG	8 cut(s)	199, 748, 1243, 1836, 2456, 3063, 4053, 4475
SmoI	CTYRAG	8 cut(s)	199, 748, 1243, 1836, 2456, 3063, 4053, 4475
SphI	GCATGC	1 cut(s)	1201
SspI	AATATT	2 cut(s)	2430, 3619
SspMI	CTAG	2 cut(s)	2864, 4035
SstI	GAGCTC	2 cut(s)	133, 277
StyD4I	CCNGG	6 cut(s)	283, 1572, 2223, 2348, 2647, 3315
StyI	CCWWGG	5 cut(s)	392, 2086, 2616, 3453, 3852
TaiI	ACGT	2 cut(s)	26, 867
TatI	WGTACW	9 cut(s)	1230, 1395, 1650, 2452, 2545, 2559, 2657, 3658, 4367
TauI	GCSGC	3 cut(s)	222, 225, 2307
TscAI	CASTG	8 cut(s)	586, 676, 1434, 1726, 2404, 3232, 4407, 4506
TseFI	GTSAC	4 cut(s)	46, 763, 2369, 3037
Tsp45I	GTSAC	4 cut(s)	46, 763, 2369, 3037
TspGWI	ACGGA	4 cut(s)	520, 2772, 3521, 4337
TspRI	CASTG	8 cut(s)	586, 676, 1434, 1726, 2404, 3232, 4407, 4506
Van91I	CCANNNNNTGG	2 cut(s)	3519, 3800
Vha464I	CTTAAG	1 cut(s)	2456
VneI	GTGCAC	1 cut(s)	1684
VpaK11BI	GGWCC	3 cut(s)	1366, 1755, 1864
VspI	ATTAAT	1 cut(s)	792
XapI	RAATTY	3 cut(s)	1785, 3141, 4533
XceI	RCATGY	2 cut(s)	1201, 4368
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3487, 3520
XhoI	CTCGAG	2 cut(s)	199, 4475
XmnI	GAANNNNTTC	1 cut(s)	2065
XspI	CTAG	2 cut(s)	2864, 4035
ZrmI	AGTACT	2 cut(s)	2454, 2659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.