Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005641.1

Orthogroup ID

OG0005776

Physical Location & Seq

Genomic Coordinates Reverse (-)

6813 .. 14629

Gene Structure 7817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005641.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5694 bp

atggcttctgggtcttggatcacgtccacctcgtgttcctcgcccgtgactcaatcccaagacgacacctcagctccggccatcttccaatggctgagatttgtcttcctctccccctgtcctcagagagctctgttatcctccattgatctcttgttcctgctcaccctcatcgccttctcaatccaaaagctctactcgaggttcacctccccccgcggcggcggcagcagcatctcggaactcgataagccgttgataacaaacagcagagctcgccgtcccggaacgacgctctgtttcaagctctctctgactctcagcgttttcttgacactctgttacaccgtagtgtgcattttcgtgtttacaagaggaagtcctgacttcccatggaagatcatagatgggttgttttggctggtgcaagctataactcatggactcattacggtactggtggcacatgaaaagagatttgaagctgtcaagcacccgctttcgcttcgtatttactgggtggccaattccgttgctgtttctctgtttgcgacttctggagtgattcgtttggtttacagtgaaggaggtttgagattggatgatgtagtttccattgtgtcttttcctttatcggctgttcttgctgttgttgctgttagaggatccactggcattagggactcattacgtgaaggaggtttgagattggatgatgtagtttccattgtgtcttttcctttatcggctgttcttgctgttgttgcggttagaggatccactggcattacagtgatgaacagagaacaatctaatggaggagaaaacggtgtggagactaaattgcatgaacccctcttgagcaaatccaatgtgactggttttgcttcagcttcattcattgataaaacgttttgggtctggatgaatcctctgctcagtaaagggtacaaatcccccttgaaggttgatgacgttccaacacttgctccacaacacagagccgaaagaatgtcggtgattttcgaatccaactggcctaaaccggaggagaagtcagagcatccagttcgaaccacattgctccggtgcttctggaaagaaattgctttcacagcttctcttgcggtgatcaggctgtgtgtcatgtatgtagggcctgtgcttatccagagctttgtggatttcactaatgggaaacgaagctcgccgtttgagggatactaccttgtgttgattcttctgtgtgctaagttcgttgaggttttgagcactcaccagttcaatttcaactcacagaaactcggcatgctcataagatcaactctcataacttctctgtacaggaagggcttgaggctgacctgctcggcgcgacaagctcatggtgttggacagattgtgaattacatggctgtggatgctcagcagctctctgacatgatgctgcagcttcatgctatatggatgatgccggtccagctcaccattgctttaatcctgctgtacaacaacctcggtgcagctacaatcacagcagtgattggaatcatgggtgtgcttgtgtttgtggtgtttgggacgagaaggaacaacaggtttcagttcaatctgatgaagcaaagggattcgaggatgaaggcgacaaacgagatgcttaactacatgagggtgatcaagttccaggcttgggaggaacacttcaacaagaggattcagacttttcgtgagtcggagtttagctggctgaccaagttcatgtactccatctcggctaatgttgtgctcatgtggtgcactcccatacttatatcaaccctcacatttgccactgccttgtatttgggtgtcaaacttgatgctgggaccgtgttcactaccacaaccattttcaaaattctgcaggagcctattaggacattcccacagtctatgatttcaatttctcaagctatgatctcgcttgggaggttggaccggtatatgagtagtagggaactggtggagggttcggttgagagagaagaaggttgtgatagtagtgttgctgtggaggttaagaatggtgcatttagctgggatgatgaaagtaatgaagaggttttgaagaatataaacttgactatcaacaaaggtgagctaaccgcgattgttgggacagtaggatctggaaagtcttccctgctggcctcaatccttggtgagatgcacaaattatccggaaaggtaaaagtttgcgggacaactgcctatgtggctcaaacatcatggattcaaaatgggacaattgaagaaaacatcctatttgggttgccaatggacagagcgagataccaggaagttatgagggtctgttgcttggaaaaggacatggaaatgatggagtatggagatcaaactgaaataggagagcgcggcatcaacctaagtggtggacagaaacaaaggatacagcttgccagggcagtatatcaggactgtgacatatatcttcttgatgatgtcttcagtgctgttgatgctcataccggatcagaaatattcaaggaatgtgtacggggagtacttaagaacaagaccattttacttgtaacccatcaagttgacttcttgcataatgttgatcttattgtggtcatgagagaaggaatgatagtacaagcaggaaagtacaacgatttgttaagcctcgatttcaaagcacttgtagttgcgcatgaaagctccatggagcttgtagaaatgagcacagctatgcctggtgaaagtacttctcccaaaccacagatatctcggcagtcctcttcaaaacatggagaagccaatggcgaaaacaactctcagctggtcgaacccaagtccaaagacggaacatctaagctcatcaaagaagaggagaaagaatcaggcaaagtcagcttgcagaattacaaaatctattgcacagaggcttttggatggtggggtgtggtgctagtgttgtctctctctcttttgtggcaaggatcactaatggctggtgattattggctggcctatgaaacttcagaaaagcgagcattgtcattcgatccttctgtgttcattactgtctatgctattatcgcagctgtttcattcttcgtggtattggtaagagcattttctgtgacaattgtggggcttacaacagctcaagttttcttcaagcagattcttcacagcatccttcatgcccccatgtcatttttcgatactacaccttctggaagaattttgagtagggcatcaactgatcagacgaatatcgacttatttcttcccttcattttgggcattaccattgccatgtatatcactgtgctcagtatctttatcgtcgtatgtcaaaactcatggccaacaatcttcttactcataccacttctttggctgaatatctggtaccggggttactatcttgcatcatctcgtgaattaactcgacttgattcaatcacaaaagcgcctgttatccatcatttctcagaaagcatatctggggttatgacaatccgatctttcagaaaccagaacaagtttaccaaggaaaatgttaggagagtgaatgccaatttgcgtatggatttccacaataacggctccaatgagtggttgggattccgtctagaactgcttgggagcttaatcctctgcatttccactttgttcatgatcatgctgccaagcagtatagtaaagccagagaatattggcttatcactctcctatggattgtccctcaacggtgtactattttgggccatatatatgagctgcttcgtagaaaataggatggtgtcagttgagaggataaagcagttttgtaacattccatcagaagcagcatggaagatagtagatcgtgcccctcctacgaattggccaactcatggcaatgttgagctgaaagacttgcaggtccgatatcgtccgaatactcccttggttctcaaaggcattagtctgagcattcatgggggtgagaaggtcggtgttgttggtcgaacggggagtgggaaatccactttaattcaggtgttctttaggctggtggaaccttcagcgggaaaaattatcatcgatggcatcgacatatgcacgatagggcttcatgatctccggtctagctttgggatcattcctcaagaacctgtcctttttgaaggaactgtgagaagcaacattgatccaatcggggtgtattcagatgaagagatttggaagagcttggagcgctgccaacttaaagatgttgttgctgcaaaacccaaaaaactcgatgctttagtggccgatgatggagataattggagcgtggggcaaagacagcttctttgtttgggacgagttatgttaaagcgcagcaggctgttgttcatggatgaggccacggcttcagttgactcacagacggatgctgcgatacaaaagatcatcagagaggactttgctgcatgtacaatcatcagcattgctcacagaataccaacagtgatggactgcaatagagttttagtagtagatgcaggaagggctaaagagtttgactcaccaacacacttgctcgagaggccatcgctgtttggggcactggttcaggagagagtgaatgccaatttgcgtatggatttccacaataacggctccaatgagtggttgggattccgtctagaactgcttgggagcttaatcctctgcatttccactttgttcatgatcatgctgccaagcagtatagtaaagccagagaatattggcttatcactctcctatggattgtccctcaacggtgtactattttgggccatatatatgagctgcttcgtagaaaataggatggtgtcagttgagaggataaagcagttttgtaacattccatcagaagcagcatggaagatagtagatcgtgcccctcctacgaattggccaactcatggcaatgttgagctgaaagatttgcaggtccgatatcgtccgaatactcccttggttctcaaaggcattagtctgagcattcatgggggtgagaaggtcggtgttgttggtcgaacggggagtgggaaatccactttaattcaggtgttctttaggctggtggaaccttcagcgggaaaaattatcatcgatggcatcgacatatgcacgatagggcttcatgatctccggtctagctttgggatcattcctcaagaacctgtcctttttgaaggaactgtgagaagcaacattgatccaatcggggtgtattcagatgaagagatttggaagagcttggagcgctgccaacttaaagatgttgttgctgcaaaacccaaaaaactcgatgctttagtggccgatgatggagataattggagcgtggggcaaagacagcttctttgtttgggacgagttatgttaaagcgcagcaggctgttgttcatggatgaggccacggcttcagttgactcacagacggatgctgcgatacaaaagatcatcagagaggactttgctgcatgtacaatcatcagcattgctcacagaataccaacagtgatggactgcaatagagttttagtagtagatgcaggaagggctaaagagtttgactcaccaacacacttgctcgagaggccatcgctgtttggggcactggttcaggagtatgccaaccgctcagcaggaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009624 GO:0009628 GO:0009987 GO:0010035 GO:0010118 GO:0012505 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1897

Amino Acids

211.3

Weight (kDa)

8.31

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47800 AT3G62700
fragaria_vesca	FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570
malus_domestica	MD03G1286300.v1.1 MD11G1313300.v1.1 MD11G1313800.v1.1 MD11G1314300.v1.1
prunus_persica	Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1
pyrus_communis	pycom03g22680 pycom03g22690 pycom11g27270
rosa_chinensis	RchiOBHm_Chr6g0293781
rosa_laevigata	RLG00000011924
rosa_multiflora	Rmu_sc0005641.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173910
rosa_rugosa	Rorug06G0238000
rosa_samantha	Rh6AG351300 Rh6BG358200 Rh6DG352000
rosa_wichuraiana	Rw6G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3938
Acc16I	TGCGCA	1 cut(s)	2715
Acc36I	ACCTGC	3 cut(s)	1373, 3928, 4972
Acc65I	GGTACC	1 cut(s)	3423
AccB1I	GGYRCC	1 cut(s)	3423
AccB7I	CCANNNNNTGG	4 cut(s)	3630, 3911, 4674, 4955
AccBSI	CCGCTC	1 cut(s)	5679
AccII	CGCG	4 cut(s)	219, 1375, 2147, 2415
AccIII	TCCGGA	1 cut(s)	2219
AclI	AACGTT	1 cut(s)	911
AcoI	YGGCCR	7 cut(s)	78, 522, 3377, 3902, 4311, 4946, 5355
AcsI	RAATTY	3 cut(s)	1896, 3252, 5688
AcuI	CTGAAG	7 cut(s)	873, 2491, 3030, 4065, 4401, 5109, 5445
AdeI	CACNNNGTG	1 cut(s)	33
AfeI	AGCGCT	2 cut(s)	4256, 5300
AflII	CTTAAG	1 cut(s)	2567
AgeI	ACCGGT	1 cut(s)	1977
AjiI	CACGTC	1 cut(s)	24
AjnI	CCWGG	4 cut(s)	1683, 2334, 2459, 2758
AjuI	GAANNNNNNNTTGG	4 cut(s)	3947, 3979, 4991, 5023
AleI	CACNNNNGTG	2 cut(s)	350, 1538
Alw21I	GWGCWC	7 cut(s)	133, 277, 1274, 1788, 1799, 2750, 3345
Alw26I	GTCTC	2 cut(s)	830, 2988
Alw44I	GTGCAC	1 cut(s)	1795
Ama87I	CYCGRG	3 cut(s)	199, 4586, 5630
Aor13HI	TCCGGA	1 cut(s)	2219
Aor51HI	AGCGCT	2 cut(s)	4256, 5300
ApaLI	GTGCAC	1 cut(s)	1795
ApoI	RAATTY	3 cut(s)	1896, 3252, 5688
ArsI	GACNNNNNNTTYG	4 cut(s)	4338, 4370, 5382, 5414
AsiGI	ACCGGT	1 cut(s)	1977
Asp700I	GAANNNNTTC	1 cut(s)	2176
Asp718I	GGTACC	1 cut(s)	3423
AspLEI	GCGC	8 cut(s)	1375, 2415, 2716, 3487, 4257, 4383, 5301, 5427
AspS9I	GGNCC	8 cut(s)	1157, 1477, 1866, 1975, 3780, 3940, 4824, 4984
AsuC2I	CCSGG	2 cut(s)	285, 3428
AsuII	TTCGAA	2 cut(s)	1026, 1072
AvaI	CYCGRG	3 cut(s)	199, 4586, 5630
AvaII	GGWCC	5 cut(s)	1477, 1866, 1975, 3940, 4984
BaeGI	GKGCMC	5 cut(s)	1799, 3889, 4612, 4933, 5656
BaeI	ACNNNNGTAYC	2 cut(s)	3415, 3448
BalI	TGGCCA	4 cut(s)	524, 3379, 3904, 4948
BamHI	GGATCC	2 cut(s)	665, 776
BanI	GGYRCC	1 cut(s)	3423
BanII	GRGCYC	2 cut(s)	133, 277
BauI	CACGAG	2 cut(s)	31, 3450
BbsI	GAAGAC	3 cut(s)	97, 2169, 2497
Bbv12I	GWGCWC	7 cut(s)	133, 277, 1274, 1788, 1799, 2750, 3345
BbvCI	CCTCAGC	1 cut(s)	70
BceAI	ACGGC	7 cut(s)	238, 264, 1195, 3634, 4428, 4678, 5472
BcgI	CGANNNNNNTGC	2 cut(s)	1052, 1086
BciT130I	CCWGG	4 cut(s)	1685, 2336, 2461, 2760
BciVI	GTATCC	2 cut(s)	1214, 2442
BclI	TGATCA	5 cut(s)	1131, 1674, 3274, 3693, 4737
BcnI	CCSGG	2 cut(s)	285, 3428
BcoDI	GTCTC	2 cut(s)	830, 2988
BfaI	CTAG	5 cut(s)	2975, 3647, 4146, 4691, 5190
BfmI	CTRYAG	2 cut(s)	1448, 1901
BfoI	RGCGCY	3 cut(s)	3488, 4258, 5302
BfrI	CTTAAG	1 cut(s)	2567
BfuAI	ACCTGC	3 cut(s)	1373, 3928, 4972
BfuI	GTATCC	2 cut(s)	1214, 2442
BglI	GCCNNNNNGGC	1 cut(s)	2255
BlpI	GCTNAGC	2 cut(s)	1425, 5680
BmcAI	AGTACT	2 cut(s)	2565, 2770
Bme1390I	CCNGG	6 cut(s)	285, 1685, 2336, 2461, 2760, 3428
Bme18I	GGWCC	5 cut(s)	1477, 1866, 1975, 3940, 4984
BmeT110I	CYCGRG	3 cut(s)	199, 4586, 5630
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	8 cut(s)	1157, 1477, 1866, 1975, 3780, 3940, 4824, 4984
BmiI	GGNNCC	9 cut(s)	667, 778, 1867, 1908, 3425, 3622, 4077, 4666, 5121
BmrFI	CCNGG	6 cut(s)	285, 1685, 2336, 2461, 2760, 3428
BmrI	ACTGGG	1 cut(s)	526
BmuI	ACTGGG	1 cut(s)	526
BpiI	GAAGAC	3 cut(s)	97, 2169, 2497
BplI	GAGNNNNNCTC	4 cut(s)	4553, 4585, 5597, 5629
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	70
Bpu1102I	GCTNAGC	2 cut(s)	1425, 5680
Bpu14I	TTCGAA	2 cut(s)	1026, 1072
BpuEI	CTTGAG	6 cut(s)	880, 1375, 1932, 3159, 4149, 5193
BpuMI	CCSGG	2 cut(s)	285, 3428
Bsa29I	ATCGAT	2 cut(s)	4101, 5145
BsaAI	YACGTR	1 cut(s)	692
BsaBI	GATNNNNATC	1 cut(s)	1547
BsaWI	WCCGGW	7 cut(s)	1045, 1086, 1977, 2219, 2528, 4140, 5184
BsaXI	ACNNNNNCTCC	6 cut(s)	58, 88, 973, 1003, 1040, 1070
Bse118I	RCCGGY	2 cut(s)	1474, 1977
Bse3DI	GCAATG	7 cut(s)	1079, 1488, 3321, 3922, 4491, 4966, 5535
Bse8I	GATNNNNATC	1 cut(s)	1547
BseAI	TCCGGA	1 cut(s)	2219
BseBI	CCWGG	4 cut(s)	1685, 2336, 2461, 2760
BseCI	ATCGAT	2 cut(s)	4101, 5145
BseJI	GATNNNNATC	1 cut(s)	1547
BseMI	GCAATG	7 cut(s)	1079, 1488, 3321, 3922, 4491, 4966, 5535
BseRI	GAGGAG	3 cut(s)	834, 1064, 2909
BseSI	GKGCMC	5 cut(s)	1799, 3889, 4612, 4933, 5656
BseYI	CCCAGC	2 cut(s)	1862, 2076
BsgI	GTGCAG	1 cut(s)	1542
Bsh1236I	CGCG	4 cut(s)	219, 1375, 2147, 2415
BshNI	GGYRCC	1 cut(s)	3423
BshTI	ACCGGT	1 cut(s)	1977
BshVI	ATCGAT	2 cut(s)	4101, 5145
BsiHKAI	GWGCWC	7 cut(s)	133, 277, 1274, 1788, 1799, 2750, 3345
BsiHKCI	CYCGRG	3 cut(s)	199, 4586, 5630
BsmAI	GTCTC	2 cut(s)	830, 2988
BsmI	GAATGC	4 cut(s)	3592, 3990, 4636, 5034
BsoBI	CYCGRG	3 cut(s)	199, 4586, 5630
Bsp119I	TTCGAA	2 cut(s)	1026, 1072
Bsp13I	TCCGGA	1 cut(s)	2219
Bsp1407I	TGTACA	4 cut(s)	1341, 1506, 4478, 5522
Bsp1720I	GCTNAGC	2 cut(s)	1425, 5680
Bsp19I	CCATGG	2 cut(s)	392, 2727
BspDI	ATCGAT	2 cut(s)	4101, 5145
BspEI	TCCGGA	1 cut(s)	2219
BspFNI	CGCG	4 cut(s)	219, 1375, 2147, 2415
BspHI	TCATGA	5 cut(s)	2637, 3690, 4132, 4734, 5176
BspLI	GGNNCC	9 cut(s)	667, 778, 1867, 1908, 3425, 3622, 4077, 4666, 5121
BspMAI	CTGCAG	2 cut(s)	1452, 1905
BspMI	ACCTGC	3 cut(s)	1373, 3928, 4972
BspQI	GCTCTTC	2 cut(s)	4238, 5282
BspT104I	TTCGAA	2 cut(s)	1026, 1072
BspT107I	GGYRCC	1 cut(s)	3423
BspTI	CTTAAG	1 cut(s)	2567
BsrBI	CCGCTC	1 cut(s)	5679
BsrDI	GCAATG	7 cut(s)	1079, 1488, 3321, 3922, 4491, 4966, 5535
BsrFI	RCCGGY	2 cut(s)	1474, 1977
BsrGI	TGTACA	4 cut(s)	1341, 1506, 4478, 5522
BssAI	RCCGGY	2 cut(s)	1474, 1977
BssSI	CACGAG	2 cut(s)	31, 3450
BssT1I	CCWWGG	6 cut(s)	392, 2197, 2727, 3564, 3963, 5007
Bst2BI	CACGAG	2 cut(s)	31, 3450
Bst2UI	CCWGG	4 cut(s)	1685, 2336, 2461, 2760
Bst6I	CTCTTC	7 cut(s)	2091, 2809, 2886, 4227, 4238, 5271, 5282
BstAFI	CTTAAG	1 cut(s)	2567
BstAUI	TGTACA	4 cut(s)	1341, 1506, 4478, 5522
BstBAI	YACGTR	1 cut(s)	692
BstBI	TTCGAA	2 cut(s)	1026, 1072
BstDSI	CCRYGG	5 cut(s)	217, 392, 2727, 4410, 5454
BstFNI	CGCG	4 cut(s)	219, 1375, 2147, 2415
BstH2I	RGCGCY	3 cut(s)	3488, 4258, 5302
BstHHI	GCGC	8 cut(s)	1375, 2415, 2716, 3487, 4257, 4383, 5301, 5427
BstMAI	GTCTC	2 cut(s)	830, 2988
BstNI	CCWGG	4 cut(s)	1685, 2336, 2461, 2760
BstNSI	RCATGY	3 cut(s)	1312, 4479, 5523
BstSCI	CCNGG	6 cut(s)	283, 1683, 2334, 2459, 2758, 3426
BstSFI	CTRYAG	2 cut(s)	1448, 1901
BstSLI	GKGCMC	5 cut(s)	1799, 3889, 4612, 4933, 5656
BstUI	CGCG	4 cut(s)	219, 1375, 2147, 2415
BstV2I	GAAGAC	3 cut(s)	97, 2169, 2497
BstX2I	RGATCY	3 cut(s)	665, 776, 2165
BstXI	CCANNNNNNTGG	1 cut(s)	3408
BstYI	RGATCY	3 cut(s)	665, 776, 2165
Bsu15I	ATCGAT	2 cut(s)	4101, 5145
BsuI	GTATCC	2 cut(s)	1214, 2442
BsuTUI	ATCGAT	2 cut(s)	4101, 5145
BtgI	CCRYGG	5 cut(s)	217, 392, 2727, 4410, 5454
BtgZI	GCGATG	3 cut(s)	157, 4581, 5625
BtrI	CACGTC	1 cut(s)	24
BtsI	GCAGTG	2 cut(s)	1545, 1830
BveI	ACCTGC	3 cut(s)	1373, 3928, 4972
CciI	TCATGA	5 cut(s)	2637, 3690, 4132, 4734, 5176
CfoI	GCGC	8 cut(s)	1375, 2415, 2716, 3487, 4257, 4383, 5301, 5427
Cfr10I	RCCGGY	2 cut(s)	1474, 1977
Cfr13I	GGNCC	8 cut(s)	1157, 1477, 1866, 1975, 3780, 3940, 4824, 4984
Cfr42I	CCGCGG	1 cut(s)	220
ClaI	ATCGAT	2 cut(s)	4101, 5145
CseI	GACGC	1 cut(s)	301
CspAI	ACCGGT	1 cut(s)	1977
CspCI	CAANNNNNGTGG	2 cut(s)	2410, 2445
DraIII	CACNNNGTG	1 cut(s)	33
DrdI	GACNNNNNNGTC	1 cut(s)	3938
DseDI	GACNNNNNNGTC	1 cut(s)	3938
EaeI	YGGCCR	7 cut(s)	78, 522, 3377, 3902, 4311, 4946, 5355
Eam1104I	CTCTTC	7 cut(s)	2091, 2809, 2886, 4227, 4238, 5271, 5282
EarI	CTCTTC	7 cut(s)	2091, 2809, 2886, 4227, 4238, 5271, 5282
Ecl136II	GAGCTC	2 cut(s)	131, 275
Eco130I	CCWWGG	6 cut(s)	392, 2197, 2727, 3564, 3963, 5007
Eco24I	GRGCYC	2 cut(s)	133, 277
Eco32I	GATATC	3 cut(s)	2790, 3947, 4991
Eco47I	GGWCC	5 cut(s)	1477, 1866, 1975, 3940, 4984
Eco47III	AGCGCT	2 cut(s)	4256, 5300
Eco53kI	GAGCTC	2 cut(s)	131, 275
Eco57I	CTGAAG	7 cut(s)	873, 2491, 3030, 4065, 4401, 5109, 5445
Eco88I	CYCGRG	3 cut(s)	199, 4586, 5630
EcoICRI	GAGCTC	2 cut(s)	131, 275
EcoO109I	RGGNCCY	1 cut(s)	1157
EcoRII	CCWGG	4 cut(s)	1683, 2334, 2459, 2758
EcoRV	GATATC	3 cut(s)	2790, 3947, 4991
EcoT14I	CCWWGG	6 cut(s)	392, 2197, 2727, 3564, 3963, 5007
EcoT38I	GRGCYC	2 cut(s)	133, 277
ErhI	CCWWGG	6 cut(s)	392, 2197, 2727, 3564, 3963, 5007
FauI	CCCGC	5 cut(s)	224, 504, 2231, 4078, 5122
FauNDI	CATATG	2 cut(s)	4115, 5159
FbaI	TGATCA	5 cut(s)	1131, 1674, 3274, 3693, 4737
FriOI	GRGCYC	2 cut(s)	133, 277
FspBI	CTAG	5 cut(s)	2975, 3647, 4146, 4691, 5190
FspI	TGCGCA	1 cut(s)	2715
GlaI	GCGC	8 cut(s)	1374, 2414, 2715, 3486, 4256, 4382, 5300, 5426
GsaI	CCCAGC	2 cut(s)	1866, 2080
GsuI	CTGGAG	1 cut(s)	579
HaeII	RGCGCY	3 cut(s)	3488, 4258, 5302
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	8 cut(s)	1375, 2415, 2716, 3487, 4257, 4383, 5301, 5427
Hin6I	GCGC	8 cut(s)	1373, 2413, 2714, 3485, 4255, 4381, 5299, 5425
HinP1I	GCGC	8 cut(s)	1373, 2413, 2714, 3485, 4255, 4381, 5299, 5425
HincII	GTYRAC	3 cut(s)	2605, 4423, 5467
HindII	GTYRAC	3 cut(s)	2605, 4423, 5467
Hpy99I	CGWCG	2 cut(s)	295, 3362
HpyCH4IV	ACGT	4 cut(s)	23, 691, 911, 975
HpySE526I	ACGT	4 cut(s)	23, 691, 911, 975
HspAI	GCGC	8 cut(s)	1373, 2413, 2714, 3485, 4255, 4381, 5299, 5425
Kpn2I	TCCGGA	1 cut(s)	2219
KpnI	GGTACC	1 cut(s)	3427
Ksp22I	TGATCA	5 cut(s)	1131, 1674, 3274, 3693, 4737
KspI	CCGCGG	1 cut(s)	220
LguI	GCTCTTC	2 cut(s)	4238, 5282
MaeI	CTAG	5 cut(s)	2975, 3647, 4146, 4691, 5190
MaeII	ACGT	4 cut(s)	23, 691, 911, 975
MaeIII	GTNAC	9 cut(s)	46, 341, 874, 2480, 2590, 3148, 3431, 3845, 4889
MbiI	CCGCTC	1 cut(s)	5679
MfeI	CAATTG	2 cut(s)	2286, 3153
MflI	RGATCY	3 cut(s)	665, 776, 2165
MlsI	TGGCCA	4 cut(s)	524, 3379, 3904, 4948
MluNI	TGGCCA	4 cut(s)	524, 3379, 3904, 4948
MlyI	GAGTC	9 cut(s)	43, 310, 438, 677, 1739, 4418, 4562, 5462, 5606
MmeI	TCCRAC	5 cut(s)	1004, 1056, 1372, 1713, 1953
Mox20I	TGGCCA	4 cut(s)	524, 3379, 3904, 4948
MroI	TCCGGA	1 cut(s)	2219
MroXI	GAANNNNTTC	1 cut(s)	2176
MscI	TGGCCA	4 cut(s)	524, 3379, 3904, 4948
Msp20I	TGGCCA	4 cut(s)	524, 3379, 3904, 4948
MspA1I	CMGCKG	5 cut(s)	219, 2845, 3110, 4085, 5129
MspCI	CTTAAG	1 cut(s)	2567
MspR9I	CCNGG	6 cut(s)	285, 1685, 2336, 2461, 2760, 3428
MunI	CAATTG	2 cut(s)	2286, 3153
Mva1269I	GAATGC	4 cut(s)	3592, 3990, 4636, 5034
MvaI	CCWGG	4 cut(s)	1685, 2336, 2461, 2760
MvnI	CGCG	4 cut(s)	219, 1375, 2147, 2415
NciI	CCSGG	2 cut(s)	285, 3428
NcoI	CCATGG	2 cut(s)	392, 2727
NdeI	CATATG	2 cut(s)	4115, 5159
NlaIV	GGNNCC	9 cut(s)	667, 778, 1867, 1908, 3425, 3622, 4077, 4666, 5121
NmeAIII	GCCGAG	4 cut(s)	1284, 1349, 1751, 2773
NmuCI	GTSAC	4 cut(s)	46, 874, 2480, 3148
NsbI	TGCGCA	1 cut(s)	2715
NspI	RCATGY	3 cut(s)	1312, 4479, 5523
NspV	TTCGAA	2 cut(s)	1026, 1072
OliI	CACNNNNGTG	2 cut(s)	350, 1538
PaeI	GCATGC	1 cut(s)	1312
PaeR7I	CTCGAG	3 cut(s)	199, 4586, 5630
PagI	TCATGA	5 cut(s)	2637, 3690, 4132, 4734, 5176
PciSI	GCTCTTC	2 cut(s)	4238, 5282
PcsI	WCGNNNNNNNCGW	5 cut(s)	29, 4107, 4439, 5151, 5483
PctI	GAATGC	4 cut(s)	3592, 3990, 4636, 5034
PdmI	GAANNNNTTC	1 cut(s)	2176
PflMI	CCANNNNNTGG	4 cut(s)	3630, 3911, 4674, 4955
PfoI	TCCNGGA	1 cut(s)	283
PinAI	ACCGGT	1 cut(s)	1977
PleI	GAGTC	9 cut(s)	43, 310, 438, 677, 1738, 4418, 4562, 5462, 5606
PpsI	GAGTC	9 cut(s)	43, 310, 438, 677, 1738, 4418, 4562, 5462, 5606
Ppu21I	YACGTR	1 cut(s)	692
Psp124BI	GAGCTC	2 cut(s)	133, 277
Psp1406I	AACGTT	1 cut(s)	911
Psp6I	CCWGG	4 cut(s)	1683, 2334, 2459, 2758
PspFI	CCCAGC	2 cut(s)	1862, 2076
PspGI	CCWGG	4 cut(s)	1683, 2334, 2459, 2758
PspN4I	GGNNCC	9 cut(s)	667, 778, 1867, 1908, 3425, 3622, 4077, 4666, 5121
PspPI	GGNCC	8 cut(s)	1157, 1477, 1866, 1975, 3780, 3940, 4824, 4984
PspXI	VCTCGAGB	1 cut(s)	199
PstI	CTGCAG	2 cut(s)	1452, 1905
PsuI	RGATCY	3 cut(s)	665, 776, 2165
PvuII	CAGCTG	2 cut(s)	2845, 3110
SacI	GAGCTC	2 cut(s)	133, 277
SacII	CCGCGG	1 cut(s)	220
SapI	GCTCTTC	2 cut(s)	4238, 5282
Sau96I	GGNCC	8 cut(s)	1157, 1477, 1866, 1975, 3780, 3940, 4824, 4984
ScaI	AGTACT	2 cut(s)	2565, 2770
SchI	GAGTC	9 cut(s)	43, 310, 438, 677, 1739, 4418, 4562, 5462, 5606
ScrFI	CCNGG	6 cut(s)	285, 1685, 2336, 2461, 2760, 3428
SfcI	CTRYAG	2 cut(s)	1448, 1901
Sfr274I	CTCGAG	3 cut(s)	199, 4586, 5630
Sfr303I	CCGCGG	1 cut(s)	220
SfuI	TTCGAA	2 cut(s)	1026, 1072
SgrBI	CCGCGG	1 cut(s)	220
SinI	GGWCC	5 cut(s)	1477, 1866, 1975, 3940, 4984
SlaI	CTCGAG	3 cut(s)	199, 4586, 5630
SphI	GCATGC	1 cut(s)	1312
SspI	AATATT	3 cut(s)	2541, 3730, 4774
SspMI	CTAG	5 cut(s)	2975, 3647, 4146, 4691, 5190
SstI	GAGCTC	2 cut(s)	133, 277
StyD4I	CCNGG	6 cut(s)	283, 1683, 2334, 2459, 2758, 3426
StyI	CCWWGG	6 cut(s)	392, 2197, 2727, 3564, 3963, 5007
TaiI	ACGT	4 cut(s)	26, 694, 914, 978
TauI	GCSGC	4 cut(s)	222, 225, 228, 2418
TseFI	GTSAC	4 cut(s)	46, 874, 2480, 3148
Tsp45I	GTSAC	4 cut(s)	46, 874, 2480, 3148
TspGWI	ACGGA	6 cut(s)	520, 2883, 3632, 4448, 4676, 5492
Van91I	CCANNNNNTGG	4 cut(s)	3630, 3911, 4674, 4955
Vha464I	CTTAAG	1 cut(s)	2567
VneI	GTGCAC	1 cut(s)	1795
VpaK11BI	GGWCC	5 cut(s)	1477, 1866, 1975, 3940, 4984
XapI	RAATTY	3 cut(s)	1896, 3252, 5688
XbaI	TCTAGA	2 cut(s)	3646, 4690
XceI	RCATGY	3 cut(s)	1312, 4479, 5523
XcmI	CCANNNNNNNNNTGG	4 cut(s)	3598, 3631, 4642, 4675
XhoI	CTCGAG	3 cut(s)	199, 4586, 5630
XmnI	GAANNNNTTC	1 cut(s)	2176
XspI	CTAG	5 cut(s)	2975, 3647, 4146, 4691, 5190
ZrmI	AGTACT	2 cut(s)	2565, 2770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.