Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005776

Physical Location & Seq

Genomic Coordinates Reverse (-)

13762937 .. 13769913

Gene Structure 6977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3852 bp

ATGAACGGAGAACAATCTAATGGAGAAAACGGTGTGGAGACTAAATTGCATGAACCCCTCTTGAGCAAATCGAATGTGACTGGTTTTGCTTCAGCTTCATTCATTAATAAAACCTTTTGGGTTTGGATGAATCCTCTGCTCAGCAAAGGGTACAAATCCCCTTTGAAGGTTGATGACGTTCCAACACTTGCTCCACAACACAGAGCCGAAAGAATGTCGGTGATTTTCGATTCCAACTGGCCTAAACCGGAGGAGAAGTCAGAGCATCCGGTTCGAACCACATTGCTCCGGAGCTTCTGGAAAGATATTGCTTTCACAGCTTCTCTTGCGTTGATCAGGCTCTGTGTCATGTATGTAGGGCCTGTGCTTATCCAGAGCTTTGTGGATTTCACCAATGGGAAACGAAGCTCGCCGTTTGAGGGATACTACCTTGTGTTGATTCTTCTGTGTGCCAAGTTCGTTGAGGTTTTGAGCACTCACCAATTCAACTTCAACTCACAGAAACTCGGCATGCTTATAAGATCAACTCTCATAACTTCTCTGTACAAGAAGGGCTTGAGGCTGACCTGCTCGGCGCGACAAGCTCATGGTGTTGGACAGATTGTGAATTACATGGCTGTGGATGCTCAGCAGCTCTCTGACATGATGCTGCAGCTTCATGCTATATGGATGATGCCGGTCCAGCTCATCATTGCTTTAATTCTGCTGTACAACAACCTCGGTGCAGCTACAATCACAGCAGTGATTGGAATCATGGGTGTGCTTGTGTTTGTGGTGTTTGGGGTGAGAAGGAACAACAGGTTTCAGTTCAATCTGATGAAGCAAAGGGATTCGAGGATGAAGGCGACAAACGAGATGCTTAACTACATGAGGGTGATCAAGTTCCAGGCTTGGGAGGAACACTTCAACAAGAGGATTCAGACTTTTCGTGAGTCGGAGTTTAGCTGGCTGACCAAGTTCATGTACTCCTTATCGGCTAATGTTGTGCTCATGTGGTGCACTCCCATACTTGTATCAACCCTCACATTTGCCACTGCCTTGTATTTGGGTGTCAAACTTGATGCTGGGACCGTGTTCACTACCACAACCATTTTCAAAATTCTGCAGGAGCCTATTAGGACATTCCCACAATCTATGATTTCAATTTCTCAAGCTATGATCTCGCTTGGGAGGTTGGACCGGTATATGAGTAGTAGGGAACTGGTGGAGGGTTCGGTTGAGAGAGAAGAAGGTTGTGATAGTACTGTTGCTGTGGAGGTTAAGAATGGTGCATTTAGCTGGGATGATGAAAGTAATGAAGAGGTTTTGAAGAATATAAACTTGACTGTCAACAAAGGTGAGCTAACCGCGATTGTTGGGACAGTAGGATCTGGAAAGTCTTCCCTGCTGGCCTCAATCCTTGGTGAGATGCACAAATTATCCGGAAAGGTAAAAGTTTGCGGGACAACTGCCTATGTGGCTCAAACATCATGGATTCAAAATGGGACAATTGAAGAAAACATCCTATTTGGTTCGCCAATGGACAGAGCGAGATACCAGGAAGTTATGAGGGTCTGTTGCTTGGAAAAGGACATGGAAATGATGGAGTATGGAGATCAAACTGAAATAGGAGAGCGCGGCATCAACCTAAGTGGTGGACAGAAACAAAGGATACAGCTTGCCAGGGCAGTATATCAGGACTGTGACATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACCGGATCAGAAATATTCAAGGAATGTGTACGGGGAGTACTTAAGAACAAGACCATTTTACTTGTAACCCATCAAGTTGACTTCTTGCATAATGTTGATCTTATTGTGGTCATGAGAGAAGGAATGATAGTACAAGCAGGAAAGTACAGTGATTTGTTAAGCCTCGATTTCAAAGCACTTGTAGTTGCACACGAAAGCTCCATGGAGCTTGTAGAAATGAGCACAGCTATGCCTGGTGAAAGTACTTCTCCCAAACCACAGATATCTCGGCAGTCCTCTTCAAAACATGGAGAAGCCAATGGCGCAAACAACTCTCAGCTGGTTGAACCCAAGTCCAAAGATGGAACATCTAAGCTTATCAAAGAAGAGGAGAAAGAATCAGGCAAAGTCAGCTTGCAGAATTACAAAATCTATTGCACAGAGGCTTTTGGGTGGTGGGGTGTGGTGCTAGTGTTGTCTCTCTCTCTTTTGTGGCAAGGATCACTAATGGCTGGTGATTATTGGCTGGCCTATGAAACTTCAGCAAAGCGAGCATTGTTATTCGATCCTTCTGTGTTCATTACTGTCTATGCTATTATCGCAGCTGTTTCATTCTTCGTGGTATTGGTAAGAGCATTTTCTGTGACAATTGTGGGGCTTACAACAGCTCAAGTTTTCTTCAAGCAGATTCTTCACAGCATCCTTCATGCCCCCATGTCATTTTTCGATACTACACCTTCTGGAAGAATTTTGAGTAGGGCATCAACTGATCAGACGAATATCGACTTATTTCTTCCCTTCATTTTGGGCATTACCATTGCCATGTATATCACTGTGCTCAGTATCTTTATCGTCGTATGTCAAAACTCATGGCCAACAATCTTCTTACTCATACCACTTCTTTGGCTGAATATCTGGTACCGGGGTTACTATCTTGCATCATCTCGTGAATTAACTCGACTTGATTCAATCACAAAAGCGCCTGTTATCCATCATTTCTCAGAAAGCATATCTGGGGTTATGACAATCCGATCTTTCAGAAACCAGAACAAGTTTACCAAGGAAAATGTTAGGAGAGTGAATGCCAATTTGCGTATGGATTTCCACAATAACGGCTCCAATGAGTGGTTGGGATTCCGTCTAGAACTGCTTGGGAGCTTAATCCTTTGCATTTCCACTTTGTTCATGATCTTGCTGCCAAGCAGTATAGTAAAGCCAGAGAATATTGGCTTATCACTCTCCTATGGATTGTCCCTCAACGGTGTACTATTTTGGGCCATATATATGAGCTGCTTCGTCGAAAATAGGATGGTGTCAGTTGAGAGGATAAAGCAGTTTTGTAACATTCCATCAGAAGCAGCATGGAAGATAGTAGATCGTGCCCCTCCTACGAATTGGCCAACTCATGGCAATGTTGAGCTGAAAGACTTGCAGGTCAGATATCGTCCGAATACTCCCTTGGTTCTCAAAGGCATTAGTCTGAGCATTCATGGGGGTGAGAAGGTCGGTGTTGTTGGTCGAACGGGGAGTGGGAAATCCACTTTAATTCAGGTGTTCTTTAGGCTGGTGGAACCTTCAGAGGGAAAAATGATCATCGATGGCATCGACATATGCACGATAGGGCTTCATGATCTCCGGTCTAGCTTTGGGATCATTCCTCAAGAACCTGTCCTTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATCGGGGTGTATTCAGATGAAGAGATTTGGAAGAGTTTGGAGCGCTGCCAACTTAAAGATGTTGTTGCTGCAAAACCCGAAAAACTCGATGCTTTAGTGGCCGATGATGGAGATAATTGGAGTGTGGGGCAAAGACAGCTTCTTTGTTTGGGACGAGTTATGTTAAAGCGCAGCAGGCTGTTGTTCATGGATGAGGCCACGGCTTCAGTTGACTCACAGACGGATGCTGCGATACAAAAGATCATCAGAGAGGACTTTGCTGCATGTACAATCATCAGCATTGCTCACAGAATACCAACAGTGATGGACTGCAATAGAGTTTTAGTAGTAGATGCAGGGAGGGCTAAAGAGTTTGACTCACCAACACACTTGCTCGAGAGGCCATCGCTGTTTGGGGCATTGGTTCAGGAGTATGCCAACCGCTCAGCAGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009624 GO:0009628 GO:0009987 GO:0010035 GO:0010118 GO:0012505 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1283

Amino Acids

143.72

Weight (kDa)

7.75

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	109 - 371	1.5e-26	ABC transporter transmembrane region
ABC_tran	PF00005	436 - 569	2.1e-21	ABC transporter
ABC_membrane	PF00664	758 - 977	3.3e-30	ABC transporter transmembrane region
ABC_tran	PF00005	1058 - 1206	7.4e-26	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47800 AT3G62700
fragaria_vesca	FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570
malus_domestica	MD03G1286300.v1.1 MD11G1313300.v1.1 MD11G1313800.v1.1 MD11G1314300.v1.1
prunus_persica	Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1
pyrus_communis	pycom03g22680 pycom03g22690 pycom11g27270
rosa_chinensis	RchiOBHm_Chr6g0293781
rosa_laevigata	RLG00000011924
rosa_multiflora	Rmu_sc0005641.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173910
rosa_rugosa	Rorug06G0238000
rosa_samantha	Rh6AG351300 Rh6BG358200 Rh6DG352000
rosa_wichuraiana	Rw6G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
AasI	GACNNNNNNGTC	1 cut(s)	3140
Acc36I	ACCTGC	2 cut(s)	575, 3130
Acc65I	GGTACC	1 cut(s)	2625
AccB1I	GGYRCC	1 cut(s)	2625
AccB7I	CCANNNNNTGG	2 cut(s)	2832, 3113
AccBSI	CCGCTC	1 cut(s)	3837
AccII	CGCG	3 cut(s)	577, 1349, 1617
AccIII	TCCGGA	2 cut(s)	288, 1421
AciI	CCGC	4 cut(s)	1347, 1440, 1617, 3835
AclWI	GGATC	6 cut(s)	1375, 1741, 2215, 2267, 3365, 3404
AcoI	YGGCCR	3 cut(s)	2579, 3104, 3513
AcsI	RAATTY	3 cut(s)	1098, 2454, 3846
AcuI	CTGAAG	5 cut(s)	75, 1693, 2232, 3267, 3603
AfeI	AGCGCT	1 cut(s)	3458
AfiI	CCNNNNNNNGG	6 cut(s)	166, 419, 892, 2832, 3113, 3287
AflII	CTTAAG	1 cut(s)	1769
AgeI	ACCGGT	1 cut(s)	1179
AjnI	CCWGG	4 cut(s)	885, 1536, 1661, 1960
AjuI	GAANNNNNNNTTGG	2 cut(s)	3149, 3181
AleI	CACNNNNGTG	1 cut(s)	740
Alw21I	GWGCWC	5 cut(s)	476, 990, 1001, 1952, 2547
Alw26I	GTCTC	2 cut(s)	32, 2190
Alw44I	GTGCAC	1 cut(s)	997
AlwI	GGATC	6 cut(s)	1375, 1741, 2215, 2267, 3365, 3404
AlwNI	CAGNNNCTG	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	3788
Aor13HI	TCCGGA	2 cut(s)	288, 1421
Aor51HI	AGCGCT	1 cut(s)	3458
ApaLI	GTGCAC	1 cut(s)	997
ApoI	RAATTY	3 cut(s)	1098, 2454, 3846
ArsI	GACNNNNNNTTYG	2 cut(s)	3540, 3572
AseI	ATTAAT	1 cut(s)	105
AsiGI	ACCGGT	1 cut(s)	1179
Asp700I	GAANNNNTTC	1 cut(s)	1378
Asp718I	GGTACC	1 cut(s)	2625
AspLEI	GCGC	6 cut(s)	577, 1617, 2033, 2689, 3459, 3585
AspS9I	GGNCC	5 cut(s)	359, 679, 1068, 1177, 2982
AsuC2I	CCSGG	1 cut(s)	2630
AsuII	TTCGAA	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	3788
AvaII	GGWCC	3 cut(s)	679, 1068, 1177
BaeGI	GKGCMC	2 cut(s)	1001, 3091
BaeI	ACNNNNGTAYC	2 cut(s)	2617, 2650
BalI	TGGCCA	2 cut(s)	2581, 3106
BanI	GGYRCC	1 cut(s)	2625
BauI	CACGAG	1 cut(s)	2652
BbsI	GAAGAC	2 cut(s)	1371, 1699
Bbv12I	GWGCWC	5 cut(s)	476, 990, 1001, 1952, 2547
BceAI	ACGGC	3 cut(s)	397, 2836, 3630
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	4 cut(s)	887, 1538, 1663, 1962
BciVI	GTATCC	2 cut(s)	416, 1644
BclI	TGATCA	4 cut(s)	333, 876, 2476, 3297
BcnI	CCSGG	1 cut(s)	2630
BcoDI	GTCTC	2 cut(s)	32, 2190
BfaI	CTAG	3 cut(s)	2177, 2849, 3348
BfmI	CTRYAG	2 cut(s)	650, 1103
BfoI	RGCGCY	2 cut(s)	2690, 3460
BfrI	CTTAAG	1 cut(s)	1769
BfuAI	ACCTGC	2 cut(s)	575, 3130
BfuI	GTATCC	2 cut(s)	416, 1644
BglI	GCCNNNNNGGC	1 cut(s)	1457
BlpI	GCTNAGC	3 cut(s)	140, 627, 3838
BmcAI	AGTACT	3 cut(s)	1243, 1767, 1972
Bme1390I	CCNGG	5 cut(s)	887, 1538, 1663, 1962, 2630
Bme18I	GGWCC	3 cut(s)	679, 1068, 1177
BmeT110I	CYCGRG	1 cut(s)	3788
BmgT120I	GGNCC	5 cut(s)	359, 679, 1068, 1177, 2982
BmiI	GGNNCC	5 cut(s)	1069, 1110, 2627, 2824, 3279
BmrFI	CCNGG	5 cut(s)	887, 1538, 1663, 1962, 2630
BpiI	GAAGAC	2 cut(s)	1371, 1699
BplI	GAGNNNNNCTC	2 cut(s)	3755, 3787
Bpu1102I	GCTNAGC	3 cut(s)	140, 627, 3838
Bpu14I	TTCGAA	1 cut(s)	274
BpuEI	CTTGAG	5 cut(s)	82, 577, 1134, 2361, 3351
BpuMI	CCSGG	1 cut(s)	2630
Bsa29I	ATCGAT	1 cut(s)	3303
BsaBI	GATNNNNATC	1 cut(s)	749
BsaJI	CCNNGG	8 cut(s)	718, 1399, 1662, 1929, 2629, 2766, 3165, 3612
BsaWI	WCCGGW	7 cut(s)	247, 268, 288, 1179, 1421, 1730, 3342
BsaXI	ACNNNNNCTCC	6 cut(s)	175, 205, 242, 272, 1910, 1940
Bsc4I	CCNNNNNNNGG	6 cut(s)	166, 419, 892, 2832, 3113, 3287
Bse118I	RCCGGY	2 cut(s)	676, 1179
Bse1I	ACTGG	3 cut(s)	85, 242, 1206
Bse3DI	GCAATG	5 cut(s)	281, 690, 2523, 3124, 3693
Bse8I	GATNNNNATC	1 cut(s)	749
BseAI	TCCGGA	2 cut(s)	288, 1421
BseBI	CCWGG	4 cut(s)	887, 1538, 1663, 1962
BseCI	ATCGAT	1 cut(s)	3303
BseDI	CCNNGG	8 cut(s)	718, 1399, 1662, 1929, 2629, 2766, 3165, 3612
BseJI	GATNNNNATC	1 cut(s)	749
BseLI	CCNNNNNNNGG	6 cut(s)	166, 419, 892, 2832, 3113, 3287
BseMI	GCAATG	5 cut(s)	281, 690, 2523, 3124, 3693
BseMII	CTCAG	7 cut(s)	154, 641, 2057, 2560, 2721, 3179, 3852
BseNI	ACTGG	3 cut(s)	85, 242, 1206
BseRI	GAGGAG	2 cut(s)	266, 2111
BseSI	GKGCMC	2 cut(s)	1001, 3091
BseYI	CCCAGC	2 cut(s)	1064, 1278
BsgI	GTGCAG	1 cut(s)	744
Bsh1236I	CGCG	3 cut(s)	577, 1349, 1617
BshNI	GGYRCC	1 cut(s)	2625
BshTI	ACCGGT	1 cut(s)	1179
BshVI	ATCGAT	1 cut(s)	3303
BsiHKAI	GWGCWC	5 cut(s)	476, 990, 1001, 1952, 2547
BsiHKCI	CYCGRG	1 cut(s)	3788
BsiSI	CCGG	9 cut(s)	248, 269, 289, 677, 1180, 1422, 1731, 2629, 3343
BslFI	GGGAC	6 cut(s)	1081, 1372, 1456, 1498, 2944, 3579
BslI	CCNNNNNNNGG	6 cut(s)	166, 419, 892, 2832, 3113, 3287
BsmAI	GTCTC	2 cut(s)	32, 2190
BsmFI	GGGAC	6 cut(s)	1081, 1372, 1456, 1498, 2944, 3579
BsmI	GAATGC	2 cut(s)	2794, 3192
BsoBI	CYCGRG	1 cut(s)	3788
Bsp119I	TTCGAA	1 cut(s)	274
Bsp1286I	GDGCHC	6 cut(s)	476, 990, 1001, 1952, 2547, 3091
Bsp13I	TCCGGA	2 cut(s)	288, 1421
Bsp1407I	TGTACA	3 cut(s)	543, 708, 3680
Bsp1720I	GCTNAGC	3 cut(s)	140, 627, 3838
Bsp19I	CCATGG	1 cut(s)	1929
BspACI	CCGC	4 cut(s)	1347, 1440, 1617, 3835
BspCNI	CTCAG	7 cut(s)	153, 640, 2056, 2559, 2720, 3180, 3851
BspDI	ATCGAT	1 cut(s)	3303
BspEI	TCCGGA	2 cut(s)	288, 1421
BspFNI	CGCG	3 cut(s)	577, 1349, 1617
BspHI	TCATGA	3 cut(s)	1839, 2892, 3334
BspLI	GGNNCC	5 cut(s)	1069, 1110, 2627, 2824, 3279
BspMAI	CTGCAG	2 cut(s)	654, 1107
BspMI	ACCTGC	2 cut(s)	575, 3130
BspPI	GGATC	6 cut(s)	1375, 1741, 2215, 2267, 3365, 3404
BspT104I	TTCGAA	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	2625
BspTI	CTTAAG	1 cut(s)	1769
BsrBI	CCGCTC	1 cut(s)	3837
BsrDI	GCAATG	5 cut(s)	281, 690, 2523, 3124, 3693
BsrFI	RCCGGY	2 cut(s)	676, 1179
BsrGI	TGTACA	3 cut(s)	543, 708, 3680
BsrI	ACTGG	3 cut(s)	85, 242, 1206
BssAI	RCCGGY	2 cut(s)	676, 1179
BssECI	CCNNGG	8 cut(s)	718, 1399, 1662, 1929, 2629, 2766, 3165, 3612
BssSI	CACGAG	1 cut(s)	2652
BssT1I	CCWWGG	4 cut(s)	1399, 1929, 2766, 3165
Bst2BI	CACGAG	1 cut(s)	2652
Bst2UI	CCWGG	4 cut(s)	887, 1538, 1663, 1962
Bst6I	CTCTTC	5 cut(s)	1293, 2011, 2088, 3429, 3440
BstAFI	CTTAAG	1 cut(s)	1769
BstAUI	TGTACA	3 cut(s)	543, 708, 3680
BstBI	TTCGAA	1 cut(s)	274
BstC8I	GCNNGC	9 cut(s)	410, 512, 947, 1389, 1659, 2123, 2235, 2259, 3590
BstDEI	CTNAG	9 cut(s)	140, 627, 1628, 2043, 2079, 2546, 2707, 3188, 3838
BstDSI	CCRYGG	2 cut(s)	1929, 3612
BstFNI	CGCG	3 cut(s)	577, 1349, 1617
BstH2I	RGCGCY	2 cut(s)	2690, 3460
BstHHI	GCGC	6 cut(s)	577, 1617, 2033, 2689, 3459, 3585
BstMAI	GTCTC	2 cut(s)	32, 2190
BstNI	CCWGG	4 cut(s)	887, 1538, 1663, 1962
BstNSI	RCATGY	2 cut(s)	514, 3681
BstSCI	CCNGG	5 cut(s)	885, 1536, 1661, 1960, 2628
BstSFI	CTRYAG	2 cut(s)	650, 1103
BstSLI	GKGCMC	2 cut(s)	1001, 3091
BstUI	CGCG	3 cut(s)	577, 1349, 1617
BstV2I	GAAGAC	2 cut(s)	1371, 1699
BstX2I	RGATCY	1 cut(s)	1367
BstXI	CCANNNNNNTGG	1 cut(s)	2610
BstYI	RGATCY	1 cut(s)	1367
Bsu15I	ATCGAT	1 cut(s)	3303
BsuI	GTATCC	2 cut(s)	416, 1644
BsuTUI	ATCGAT	1 cut(s)	3303
BtgI	CCRYGG	2 cut(s)	1929, 3612
BtgZI	GCGATG	1 cut(s)	3783
BtsI	GCAGTG	2 cut(s)	747, 1032
BtsIMutI	CAGTG	6 cut(s)	747, 1032, 1717, 1882, 2538, 3720
BveI	ACCTGC	2 cut(s)	575, 3130
Cac8I	GCNNGC	9 cut(s)	410, 512, 947, 1389, 1659, 2123, 2235, 2259, 3590
CaiI	CAGNNNCTG	1 cut(s)	342
CciI	TCATGA	3 cut(s)	1839, 2892, 3334
CfoI	GCGC	6 cut(s)	577, 1617, 2033, 2689, 3459, 3585
Cfr10I	RCCGGY	2 cut(s)	676, 1179
Cfr13I	GGNCC	5 cut(s)	359, 679, 1068, 1177, 2982
ClaI	ATCGAT	1 cut(s)	3303
CspAI	ACCGGT	1 cut(s)	1179
CspCI	CAANNNNNGTGG	2 cut(s)	1612, 1647
DdeI	CTNAG	9 cut(s)	140, 627, 1628, 2043, 2079, 2546, 2707, 3188, 3838
DrdI	GACNNNNNNGTC	1 cut(s)	3140
DseDI	GACNNNNNNGTC	1 cut(s)	3140
EaeI	YGGCCR	3 cut(s)	2579, 3104, 3513
Eam1104I	CTCTTC	5 cut(s)	1293, 2011, 2088, 3429, 3440
EarI	CTCTTC	5 cut(s)	1293, 2011, 2088, 3429, 3440
Eco130I	CCWWGG	4 cut(s)	1399, 1929, 2766, 3165
Eco32I	GATATC	2 cut(s)	1992, 3149
Eco47I	GGWCC	3 cut(s)	679, 1068, 1177
Eco47III	AGCGCT	1 cut(s)	3458
Eco57I	CTGAAG	5 cut(s)	75, 1693, 2232, 3267, 3603
Eco88I	CYCGRG	1 cut(s)	3788
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRII	CCWGG	4 cut(s)	885, 1536, 1661, 1960
EcoRV	GATATC	2 cut(s)	1992, 3149
EcoT14I	CCWWGG	4 cut(s)	1399, 1929, 2766, 3165
ErhI	CCWWGG	4 cut(s)	1399, 1929, 2766, 3165
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FaqI	GGGAC	6 cut(s)	1081, 1372, 1456, 1498, 2944, 3579
FauI	CCCGC	1 cut(s)	1433
FauNDI	CATATG	1 cut(s)	3317
FbaI	TGATCA	4 cut(s)	333, 876, 2476, 3297
FspBI	CTAG	3 cut(s)	2177, 2849, 3348
GlaI	GCGC	6 cut(s)	576, 1616, 2032, 2688, 3458, 3584
GsaI	CCCAGC	2 cut(s)	1068, 1282
HaeII	RGCGCY	2 cut(s)	2690, 3460
HapII	CCGG	9 cut(s)	248, 269, 289, 677, 1180, 1422, 1731, 2629, 3343
HhaI	GCGC	6 cut(s)	577, 1617, 2033, 2689, 3459, 3585
Hin6I	GCGC	6 cut(s)	575, 1615, 2031, 2687, 3457, 3583
HinP1I	GCGC	6 cut(s)	575, 1615, 2031, 2687, 3457, 3583
HincII	GTYRAC	3 cut(s)	1330, 1807, 3625
HindII	GTYRAC	3 cut(s)	1330, 1807, 3625
HindIII	AAGCTT	1 cut(s)	2081
HpaII	CCGG	9 cut(s)	248, 269, 289, 677, 1180, 1422, 1731, 2629, 3343
Hpy166II	GTNNAC	9 cut(s)	999, 1077, 1330, 1637, 1757, 1807, 2763, 2972, 3625
Hpy8I	GTNNAC	9 cut(s)	999, 1077, 1330, 1637, 1757, 1807, 2763, 2972, 3625
Hpy99I	CGWCG	2 cut(s)	2564, 3008
HpyCH4IV	ACGT	1 cut(s)	177
HpyF3I	CTNAG	9 cut(s)	140, 627, 1628, 2043, 2079, 2546, 2707, 3188, 3838
HpySE526I	ACGT	1 cut(s)	177
HspAI	GCGC	6 cut(s)	575, 1615, 2031, 2687, 3457, 3583
Kpn2I	TCCGGA	2 cut(s)	288, 1421
KpnI	GGTACC	1 cut(s)	2629
Ksp22I	TGATCA	4 cut(s)	333, 876, 2476, 3297
LmnI	GCTCC	9 cut(s)	196, 291, 291, 1108, 1931, 1933, 2828, 2862, 3454
MaeI	CTAG	3 cut(s)	2177, 2849, 3348
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	6 cut(s)	76, 1682, 1792, 2350, 2633, 3047
MbiI	CCGCTC	1 cut(s)	3837
MfeI	CAATTG	2 cut(s)	1488, 2355
MflI	RGATCY	1 cut(s)	1367
MhlI	GDGCHC	6 cut(s)	476, 990, 1001, 1952, 2547, 3091
MlsI	TGGCCA	2 cut(s)	2581, 3106
MluNI	TGGCCA	2 cut(s)	2581, 3106
MlyI	GAGTC	3 cut(s)	941, 3620, 3764
MmeI	TCCRAC	5 cut(s)	206, 258, 574, 915, 1155
Mox20I	TGGCCA	2 cut(s)	2581, 3106
MroI	TCCGGA	2 cut(s)	288, 1421
MroXI	GAANNNNTTC	1 cut(s)	1378
MscI	TGGCCA	2 cut(s)	2581, 3106
Msp20I	TGGCCA	2 cut(s)	2581, 3106
MspA1I	CMGCKG	2 cut(s)	2047, 2312
MspCI	CTTAAG	1 cut(s)	1769
MspI	CCGG	9 cut(s)	248, 269, 289, 677, 1180, 1422, 1731, 2629, 3343
MspR9I	CCNGG	5 cut(s)	887, 1538, 1663, 1962, 2630
MunI	CAATTG	2 cut(s)	1488, 2355
Mva1269I	GAATGC	2 cut(s)	2794, 3192
MvaI	CCWGG	4 cut(s)	887, 1538, 1663, 1962
MvnI	CGCG	3 cut(s)	577, 1349, 1617
NciI	CCSGG	1 cut(s)	2630
NcoI	CCATGG	1 cut(s)	1929
NdeI	CATATG	1 cut(s)	3317
NlaIV	GGNNCC	5 cut(s)	1069, 1110, 2627, 2824, 3279
NmeAIII	GCCGAG	3 cut(s)	486, 551, 1975
NmuCI	GTSAC	3 cut(s)	76, 1682, 2350
NspI	RCATGY	2 cut(s)	514, 3681
NspV	TTCGAA	1 cut(s)	274
OliI	CACNNNNGTG	1 cut(s)	740
PaeI	GCATGC	1 cut(s)	514
PaeR7I	CTCGAG	1 cut(s)	3788
PagI	TCATGA	3 cut(s)	1839, 2892, 3334
PcsI	WCGNNNNNNNCGW	2 cut(s)	3309, 3641
PctI	GAATGC	2 cut(s)	2794, 3192
PdmI	GAANNNNTTC	1 cut(s)	1378
PflMI	CCANNNNNTGG	2 cut(s)	2832, 3113
PinAI	ACCGGT	1 cut(s)	1179
PleI	GAGTC	3 cut(s)	940, 3620, 3764
PpsI	GAGTC	3 cut(s)	940, 3620, 3764
PshBI	ATTAAT	1 cut(s)	105
PsiI	TTATAA	1 cut(s)	518
Psp6I	CCWGG	4 cut(s)	885, 1536, 1661, 1960
PspFI	CCCAGC	2 cut(s)	1064, 1278
PspGI	CCWGG	4 cut(s)	885, 1536, 1661, 1960
PspN4I	GGNNCC	5 cut(s)	1069, 1110, 2627, 2824, 3279
PspPI	GGNCC	5 cut(s)	359, 679, 1068, 1177, 2982
PstI	CTGCAG	2 cut(s)	654, 1107
PstNI	CAGNNNCTG	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	1367
PvuII	CAGCTG	2 cut(s)	2047, 2312
Sau96I	GGNCC	5 cut(s)	359, 679, 1068, 1177, 2982
ScaI	AGTACT	3 cut(s)	1243, 1767, 1972
SchI	GAGTC	3 cut(s)	941, 3620, 3764
ScrFI	CCNGG	5 cut(s)	887, 1538, 1663, 1962, 2630
SduI	GDGCHC	6 cut(s)	476, 990, 1001, 1952, 2547, 3091
SfcI	CTRYAG	2 cut(s)	650, 1103
Sfr274I	CTCGAG	1 cut(s)	3788
SfuI	TTCGAA	1 cut(s)	274
SinI	GGWCC	3 cut(s)	679, 1068, 1177
SlaI	CTCGAG	1 cut(s)	3788
SmlI	CTYRAG	7 cut(s)	61, 556, 1149, 1769, 2376, 3366, 3788
SmoI	CTYRAG	7 cut(s)	61, 556, 1149, 1769, 2376, 3366, 3788
SphI	GCATGC	1 cut(s)	514
SsiI	CCGC	4 cut(s)	1347, 1440, 1617, 3835
SspI	AATATT	2 cut(s)	1743, 2932
SspMI	CTAG	3 cut(s)	2177, 2849, 3348
StyD4I	CCNGG	5 cut(s)	885, 1536, 1661, 1960, 2628
StyI	CCWWGG	4 cut(s)	1399, 1929, 2766, 3165
TaiI	ACGT	1 cut(s)	180
TauI	GCSGC	1 cut(s)	1620
TscAI	CASTG	6 cut(s)	747, 1039, 1717, 1882, 2545, 3720
TseFI	GTSAC	3 cut(s)	76, 1682, 2350
Tsp45I	GTSAC	3 cut(s)	76, 1682, 2350
TspGWI	ACGGA	3 cut(s)	21, 2834, 3650
TspRI	CASTG	6 cut(s)	747, 1039, 1717, 1882, 2545, 3720
Van91I	CCANNNNNTGG	2 cut(s)	2832, 3113
Vha464I	CTTAAG	1 cut(s)	1769
VneI	GTGCAC	1 cut(s)	997
VpaK11BI	GGWCC	3 cut(s)	679, 1068, 1177
VspI	ATTAAT	1 cut(s)	105
XapI	RAATTY	3 cut(s)	1098, 2454, 3846
XbaI	TCTAGA	1 cut(s)	2848
XceI	RCATGY	2 cut(s)	514, 3681
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2800, 2833
XhoI	CTCGAG	1 cut(s)	3788
XmnI	GAANNNNTTC	1 cut(s)	1378
XspI	CTAG	3 cut(s)	2177, 2849, 3348
ZrmI	AGTACT	3 cut(s)	1243, 1767, 1972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.