Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005776

Physical Location & Seq

Genomic Coordinates Forward (+)

55185431 .. 55192390

Gene Structure 6960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG352000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4530 bp

ATGGCTTCTGGGTCTTGGATCACGTCCACCTCGTGTTCCTCGTCCGTGATTCAATCCCAAGACGACACCTCAGCTCCGGCCATCTTCCAATGGCTGAGATTCGTCTTCCTCTCCCCCTGTCCCCAGAGAGCTCTGTTATCCTCCATTGATCTCTTGTTCCTGCTCACCCTCATCGCCTTCTCAATCCAAAAGCTCTACTCGAGGTTCACCTCCCCCCGCGGCGGCAGCTCGGAACTCGATAAGCCGTTGATAACAAACAGCAGAGCTCGCCGTCCCGGAACGACGCTTTGTTTCAAGCTCTCTCTGACTCTCAGCGTTTTCTTGACACTCTGTTACACCGTAGTGTGCATTTTAGCGTTTACAAGAGGAAGTCCTGACTTCCCATGGAAGATCATAGATGGGTTGTTTTGGCTGGTTCAAGCTATAACTCATGGACTCATTACAGTACTAGTGGCACATGAAAAGAGATTTGAAGCTGTCAAGCACCCGCTTTCGCTTCGGATTTACTGGGTGGCCAATTTCGTTGCTGTTTCTCTGTTTGCAACTTCTGGAGTGATTCGTTTGGTTTACAATGAAGGAGGTTTGAGATTGGATGATGTAGTTTCCATCGTGTCTTTTCCTTTATCGGTTGTTCTTGCTGTTGTTGCGGTTAGAGGATCCACCGGCATTAGAGTGATGAACAGAGAACAATCTAATGGAGGAGAAAACGGTGTGGAGACTAAATTGCATGAACCCCTCTTGAGCAAATCCAATGTGACTGGTTTTGCTTCAGCTTCATTCATTAATAAAACCTTTTGGGTTTGGATGAATCCTCTGCTCAGTAAAGGGTACAAATCCCCTTTGAAGGTTGATGACGTTCCAACACTTGCTCCACAACACAGAGCGGAAAGAATGTCGGTGATTTTCGAATCCAACTGGCCTAAACCGGAGGAGAAGTCAGAGCATCCGGTTCGAACCACATTGCTCCGGTGCTTCTGGAAAGATATTGCTTTCACAGCTTCTCTTGCGGTGATCAGGCTGTGTGTCATGTATGTAGGGCCTGTGCTTATCCAGAGCTTTGTGGATTTCACTAATGGGAAACGAAGCTCGCCGTTTGAGGGATACTACCTTGTGTTGATTCTTCTGTGTGCCAAGTTCGTTGAGGTTTTGAGCACTCACCAATTCAACTTCAACTCACAGAAACTCGGCATGCTCATAAGATCAACTCTCATAACTTCTCTGTACAAGAAGGGCTTGAGGCTGACCTGCTCGGCGCGACAAGCTCATGGCGTTGGACAGATTGTGAATTACATGGCTGTGGATGCTCAGCAGCTCTCTGACATGATGCTGCAGCTTCATGCTATATGGATGATGCCGGTCCAGCTCATCATTGCTTTAAGCCTGCTGTACAACAACCTCGGTGCAGCTACAATCACAGCAGTGATTGGAATCATGGGTGTGATTGTGTTTGTGGTGTTTGGGACGAGAAGGAACAACAGGTTTCAGTTCAATCTGATGAAGCAAAGGGATTCGAGGATGAAGGCGACAAACGAGATGCTTAACTACATGAGGGTGATCAAGTTCCAGGCTTGGGAGGAACACTTCAACAAGAGGATTCAAACTTTTCGTGAGTCGGAGTTTAGCTGGCTGACCAAGTTCATGTACTCCATCTCGGCTAATGTTGTGCTCATGTGGTGCACTCCCATACTTATATCAACCCTCACATTTGCCACTGCCTTGTATTTGGGTGTCAAACTTGATGCTGGGACCGTGTTCACTACCACAACCATTTTCAAAATTCTGCAGGAGCCTATTAGGACATTCCCACAATCTATGATTTCAATTTCTCAAGCAATGATCTCGCTCGGAAGGTTGGACCGGTATATGAGTAGTAGGGAACTGGTGGAGGGTTCGGTTGAGAGAGAAGAAGGTTGTGATAGTAGTGTTGCTGTGGAGGTTAAGAATGGTGCATTTAGCTGGGATGATGAAAGTAATGAAGAGGTTTTGAAGAATATAAACTTGACTGTCAACAAAGGTGAGCTAACCGCAATTGTTGGGACAGTAGGATCTGGAAAGTCTTCCCTGCTGGCCTCAATCCTTGGTGAGATGCACAAATTATCCGGAAAGGTAAAAGTTTGCGGGACAACTGCCTATGTGGCTCAAACATCATGGATTCAAAATGGGACAATTGAAGAAAACATCCTATTTGGTTTGCCAATGGACAGAGCGAGATACCAGGAAGTTATGAGGGTCTGTTGCTTGGAAAAGGACATGGAAATGATGGAGTATGGAGATCAAACTGAAATAGGAGAGCGCGGCATCAACCTAAGTGGTGGACAGAAACAAAGGATACAGCTTGCCAGGGCAGTATATCAGGACTGTGACATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACCGGATCAGAAATATTCAAGGAATGTGTACGGGGAGTACTTAAGAACAAGACCATTTTACTTGTAACCCATCAAGTTGACTTCTTGCATAATGTTGATCTTATTGTGGTCATGAGAGAAGGAATGATAGTACAAGCAGGAAAGTACAACGATTTGTTAAGCCTCGATTTCAAAGCACTTGTAGTTGCGCACGAAAGCTCCATGGAGCTTGTAGAAATGAGCACAGCTATGCCTGGTGAAAGTACTTCTCCCAAACCACAGATATCTCGGCATTCCTCTTCAGAACATGGAGAAGCCAATGGCGAAAACAACTCTCAGCTGGTCGAACCCAAGTCCAAAGACGGAACATCTAAGCTCATCAAAGAAGAAGAGAAAGAATCAGGCAAAGTCAGCTTGCAGAATTACAAAATCTATTGCACAGAGGCTTTTGGATGGTGGGGTGTGGTGCTAGTGTTGTCTCTCTCTCTTTTGTGGCAAGGATCACTAATGGCTGGTGATTATTGGCTGGCCTATGAAACTTCAGCAAAGCGAGCATTGTCATTCGATCCTTCTGTGTTCATTACTGTCTATGCTATTATCGCAGCTGTTTCATTCTTCGTGGTATTGGTAAGAGCATTTTCTGTGACAATTGTGGGGCTTACAACAGCTCAAGTTTTCTTCAAGCAGATTCTTCACAGCATCCTTCATGCCCCCATGTCATTTTTCGATACTACACCTTCTGGAAGAATTTTGAGTAGGGCATCAACTGATCAGACGAATATCGACTTATTTCTTCCCTTCATTTTGGGCATTACCATTGCCATGTATATCACTGTGCTCGGTATCTTTATCGTCGTATGTCAAAACTCATGGCCAACAATCTTCTTACTCATACCACTTCTTTGGCTGAATATCTGGTACCGGGGTTACTATCTTGCATCATCTCGTGAATTAACTCGACTTGATTCAATCACAAAAGCGCCTGTTATCCATCATTTCTCAGAAAGCATATCTGGGGTTATGACAATCCGATCTTTTAGAAACCAGAACAAGTTTACCAAGGAAAATGTTAGGAGAGTGAATGCCAATTTGCGTATGGATTTCCACAATAACGGCTCCAATGAGTGGTTGGGATTCCGTCTAGAACTGCTTGGGAGCTTAATCCTCTGCATTTCCACTTTGTTCATGATCTTGCTGCCAAGCAGTATAGTAAAGCCAGAGAATATTGGCTTATCACTCTCCTATGGATTGTCCCTCAACGGTGTACTATTTTGGGCCATATATATGAGCTGCTTCGTCGAAAATAGGATGGTATCAGTTGAGAGGATAAAGCAGTTTTGTAACATTCCATCAGAAGCAGCATGGAAGATAGTAGATCGTGCCCCTCCTACGAATTGGCCAACTCATGGCAATGTTGAGCTGAAAGACTTGCAGGTCAGATATCGTCCGAATACTCCCTTGGTTCTCAAAGGCATTAGTCTGAGCATTCATGGGGGTGAGAAGGTCGGTGTTGTTGGTCGAACGGGGAGTGGGAAATCCACTTTAATTCAGGTGTTCTTTAGGCTGGTGGAACCTTCAGCGGGAAAAATTATCATCGATGGCATCGACATATGCACGATAGGGCTTCATGATCTCCGGTCTAGCTTTGGGATCATTCCTCAAGAACCTGTCCTTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATCGGGGTGTATTCAGATGAAGAGATTTGGAAGAGCTTGGAGCGCTGCCAACTTAAAGATGTTGTTGCTGCAAAACCCAAAAAACTCGATGCTTTAGTGGCCGATGATGGAGATAATTGGAGCGTGGGGCAAAGACAGCTTCTTTGTTTGGGACGAGTTATGTTAAAGCGCAGCAGGCTGTTGTTCATGGATGAGGCCACGGCTTCAGTTGACTCACAGACGGATGCTGCGATACAAAAGATCATCAGAGAGGACTTTGCTGCATGTACAATCATCAGCATTGCTCACAGAATACCAACAGTGATGGACTGCAATAGAGTTTTAGTAGTAGATGCAGGGAGGGCTAAAGAGTTTGACTCACCATCACACTTGCTCGAGAGGCCATCGCTGTTTGGGGCATTGGTTCAGGAGTATGCCAACCGCTCAGCAGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009624 GO:0009628 GO:0009987 GO:0010035 GO:0010118 GO:0012505 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1509

Amino Acids

168.57

Weight (kDa)

8.53

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	334 - 597	1.9e-25	ABC transporter transmembrane region
ABC_tran	PF00005	662 - 795	2.7e-21	ABC transporter
ABC_membrane	PF00664	983 - 1203	1.6e-30	ABC transporter transmembrane region
ABC_tran	PF00005	1284 - 1432	4.1e-26	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47800 AT3G62700
fragaria_vesca	FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570
malus_domestica	MD03G1286300.v1.1 MD11G1313300.v1.1 MD11G1313800.v1.1 MD11G1314300.v1.1
prunus_persica	Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1
pyrus_communis	pycom03g22680 pycom03g22690 pycom11g27270
rosa_chinensis	RchiOBHm_Chr6g0293781
rosa_laevigata	RLG00000011924
rosa_multiflora	Rmu_sc0005641.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173910
rosa_rugosa	Rorug06G0238000
rosa_samantha	Rh6AG351300 Rh6BG358200 Rh6DG352000
rosa_wichuraiana	Rw6G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3818
Acc16I	TGCGCA	1 cut(s)	2595
Acc36I	ACCTGC	2 cut(s)	1253, 3808
Acc65I	GGTACC	1 cut(s)	3303
AccB1I	GGYRCC	1 cut(s)	3303
AccB7I	CCANNNNNTGG	2 cut(s)	3510, 3791
AccBSI	CCGCTC	2 cut(s)	884, 4515
AccII	CGCG	3 cut(s)	219, 1255, 2295
AccIII	TCCGGA	1 cut(s)	2099
AclWI	GGATC	9 cut(s)	26, 651, 664, 2053, 2419, 2893, 2945, 4043, 4082
AcoI	YGGCCR	5 cut(s)	78, 513, 3257, 3782, 4191
AcsI	RAATTY	3 cut(s)	1776, 3132, 4524
AcuI	CTGAAG	6 cut(s)	753, 2371, 2670, 2910, 3945, 4281
AdeI	CACNNNGTG	1 cut(s)	33
AfeI	AGCGCT	1 cut(s)	4136
AfiI	CCNNNNNNNGG	7 cut(s)	221, 844, 1097, 1570, 3510, 3791, 3965
AflII	CTTAAG	1 cut(s)	2447
AgeI	ACCGGT	1 cut(s)	1857
AhlI	ACTAGT	1 cut(s)	448
AjiI	CACGTC	1 cut(s)	24
AjnI	CCWGG	4 cut(s)	1563, 2214, 2339, 2638
AjuI	GAANNNNNNNTTGG	2 cut(s)	3827, 3859
AleI	CACNNNNGTG	2 cut(s)	341, 1418
Alw21I	GWGCWC	7 cut(s)	133, 268, 1154, 1668, 1679, 2630, 3225
Alw26I	GTCTC	2 cut(s)	710, 2868
Alw44I	GTGCAC	1 cut(s)	1675
AlwI	GGATC	9 cut(s)	26, 651, 664, 2053, 2419, 2893, 2945, 4043, 4082
Ama87I	CYCGRG	2 cut(s)	199, 4466
Aor13HI	TCCGGA	1 cut(s)	2099
Aor51HI	AGCGCT	1 cut(s)	4136
ApaLI	GTGCAC	1 cut(s)	1675
ApoI	RAATTY	3 cut(s)	1776, 3132, 4524
ArsI	GACNNNNNNTTYG	2 cut(s)	4218, 4250
AseI	ATTAAT	1 cut(s)	783
AsiGI	ACCGGT	1 cut(s)	1857
Asp700I	GAANNNNTTC	1 cut(s)	2056
Asp718I	GGTACC	1 cut(s)	3303
AspLEI	GCGC	6 cut(s)	1255, 2295, 2596, 3367, 4137, 4263
AspS9I	GGNCC	5 cut(s)	1037, 1357, 1746, 1855, 3660
AsuC2I	CCSGG	2 cut(s)	276, 3308
AsuII	TTCGAA	2 cut(s)	906, 952
AvaI	CYCGRG	2 cut(s)	199, 4466
AvaII	GGWCC	3 cut(s)	1357, 1746, 1855
BaeGI	GKGCMC	2 cut(s)	1679, 3769
BaeI	ACNNNNGTAYC	2 cut(s)	3295, 3328
BalI	TGGCCA	3 cut(s)	515, 3259, 3784
BamHI	GGATCC	1 cut(s)	656
BanI	GGYRCC	1 cut(s)	3303
BanII	GRGCYC	2 cut(s)	133, 268
BauI	CACGAG	2 cut(s)	31, 3330
BbsI	GAAGAC	3 cut(s)	97, 2049, 2377
Bbv12I	GWGCWC	7 cut(s)	133, 268, 1154, 1668, 1679, 2630, 3225
BbvCI	CCTCAGC	1 cut(s)	70
BceAI	ACGGC	5 cut(s)	229, 255, 1075, 3514, 4308
BcgI	CGANNNNNNTGC	4 cut(s)	932, 966, 1821, 1855
BciT130I	CCWGG	4 cut(s)	1565, 2216, 2341, 2640
BciVI	GTATCC	2 cut(s)	1094, 2322
BclI	TGATCA	3 cut(s)	1011, 1554, 3154
BcnI	CCSGG	2 cut(s)	276, 3308
BcoDI	GTCTC	2 cut(s)	710, 2868
BcuI	ACTAGT	1 cut(s)	448
BfaI	CTAG	4 cut(s)	449, 2855, 3527, 4026
BfmI	CTRYAG	2 cut(s)	1328, 1781
BfoI	RGCGCY	2 cut(s)	3368, 4138
BfrI	CTTAAG	1 cut(s)	2447
BfuAI	ACCTGC	2 cut(s)	1253, 3808
BfuI	GTATCC	2 cut(s)	1094, 2322
BglI	GCCNNNNNGGC	1 cut(s)	2135
BlpI	GCTNAGC	2 cut(s)	1305, 4516
BmcAI	AGTACT	3 cut(s)	447, 2445, 2650
Bme1390I	CCNGG	6 cut(s)	276, 1565, 2216, 2341, 2640, 3308
Bme18I	GGWCC	3 cut(s)	1357, 1746, 1855
BmeT110I	CYCGRG	2 cut(s)	199, 4466
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	5 cut(s)	1037, 1357, 1746, 1855, 3660
BmiI	GGNNCC	6 cut(s)	658, 1747, 1788, 3305, 3502, 3957
BmrFI	CCNGG	6 cut(s)	276, 1565, 2216, 2341, 2640, 3308
BmrI	ACTGGG	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	517
BpiI	GAAGAC	3 cut(s)	97, 2049, 2377
BplI	GAGNNNNNCTC	2 cut(s)	4433, 4465
BpmI	CTGGAG	1 cut(s)	570
Bpu10I	CCTNAGC	1 cut(s)	70
Bpu1102I	GCTNAGC	2 cut(s)	1305, 4516
Bpu14I	TTCGAA	2 cut(s)	906, 952
BpuEI	CTTGAG	5 cut(s)	760, 1255, 1812, 3039, 4029
BpuMI	CCSGG	2 cut(s)	276, 3308
Bsa29I	ATCGAT	1 cut(s)	3981
BsaBI	GATNNNNATC	1 cut(s)	1427
BsaWI	WCCGGW	7 cut(s)	925, 946, 966, 1857, 2099, 2408, 4020
BsaXI	ACNNNNNCTCC	8 cut(s)	58, 88, 853, 883, 920, 950, 2588, 2618
Bsc4I	CCNNNNNNNGG	7 cut(s)	221, 844, 1097, 1570, 3510, 3791, 3965
Bse118I	RCCGGY	3 cut(s)	662, 1354, 1857
Bse1I	ACTGG	4 cut(s)	512, 763, 920, 1884
Bse3DI	GCAATG	6 cut(s)	959, 1368, 1839, 3201, 3802, 4371
Bse8I	GATNNNNATC	1 cut(s)	1427
BseAI	TCCGGA	1 cut(s)	2099
BseBI	CCWGG	4 cut(s)	1565, 2216, 2341, 2640
BseCI	ATCGAT	1 cut(s)	3981
BseJI	GATNNNNATC	1 cut(s)	1427
BseLI	CCNNNNNNNGG	7 cut(s)	221, 844, 1097, 1570, 3510, 3791, 3965
BseMI	GCAATG	6 cut(s)	959, 1368, 1839, 3201, 3802, 4371
BseMII	CTCAG	9 cut(s)	84, 86, 325, 832, 1319, 2735, 3399, 3857, 4530
BseNI	ACTGG	4 cut(s)	512, 763, 920, 1884
BseRI	GAGGAG	2 cut(s)	714, 944
BseSI	GKGCMC	2 cut(s)	1679, 3769
BseYI	CCCAGC	2 cut(s)	1742, 1956
BsgI	GTGCAG	1 cut(s)	1422
Bsh1236I	CGCG	3 cut(s)	219, 1255, 2295
BshNI	GGYRCC	1 cut(s)	3303
BshTI	ACCGGT	1 cut(s)	1857
BshVI	ATCGAT	1 cut(s)	3981
BsiHKAI	GWGCWC	7 cut(s)	133, 268, 1154, 1668, 1679, 2630, 3225
BsiHKCI	CYCGRG	2 cut(s)	199, 4466
BslFI	GGGAC	9 cut(s)	105, 258, 1474, 1759, 2050, 2134, 2176, 3622, 4257
BslI	CCNNNNNNNGG	7 cut(s)	221, 844, 1097, 1570, 3510, 3791, 3965
BsmAI	GTCTC	2 cut(s)	710, 2868
BsmFI	GGGAC	9 cut(s)	105, 258, 1474, 1759, 2050, 2134, 2176, 3622, 4257
BsmI	GAATGC	3 cut(s)	2677, 3472, 3870
BsoBI	CYCGRG	2 cut(s)	199, 4466
Bsp119I	TTCGAA	2 cut(s)	906, 952
Bsp1286I	GDGCHC	8 cut(s)	133, 268, 1154, 1668, 1679, 2630, 3225, 3769
Bsp13I	TCCGGA	1 cut(s)	2099
Bsp1407I	TGTACA	3 cut(s)	1221, 1386, 4358
Bsp1720I	GCTNAGC	2 cut(s)	1305, 4516
Bsp19I	CCATGG	2 cut(s)	383, 2607
BspCNI	CTCAG	9 cut(s)	83, 87, 324, 831, 1318, 2734, 3398, 3858, 4529
BspDI	ATCGAT	1 cut(s)	3981
BspEI	TCCGGA	1 cut(s)	2099
BspFNI	CGCG	3 cut(s)	219, 1255, 2295
BspHI	TCATGA	3 cut(s)	2517, 3570, 4012
BspLI	GGNNCC	6 cut(s)	658, 1747, 1788, 3305, 3502, 3957
BspMAI	CTGCAG	2 cut(s)	1332, 1785
BspMI	ACCTGC	2 cut(s)	1253, 3808
BspPI	GGATC	9 cut(s)	26, 651, 664, 2053, 2419, 2893, 2945, 4043, 4082
BspQI	GCTCTTC	1 cut(s)	4118
BspT104I	TTCGAA	2 cut(s)	906, 952
BspT107I	GGYRCC	1 cut(s)	3303
BspTI	CTTAAG	1 cut(s)	2447
BsrBI	CCGCTC	2 cut(s)	884, 4515
BsrDI	GCAATG	6 cut(s)	959, 1368, 1839, 3201, 3802, 4371
BsrFI	RCCGGY	3 cut(s)	662, 1354, 1857
BsrGI	TGTACA	3 cut(s)	1221, 1386, 4358
BsrI	ACTGG	4 cut(s)	512, 763, 920, 1884
BssAI	RCCGGY	3 cut(s)	662, 1354, 1857
BssSI	CACGAG	2 cut(s)	31, 3330
BssT1I	CCWWGG	5 cut(s)	383, 2077, 2607, 3444, 3843
Bst2BI	CACGAG	2 cut(s)	31, 3330
Bst2UI	CCWGG	4 cut(s)	1565, 2216, 2341, 2640
Bst6I	CTCTTC	5 cut(s)	1971, 2689, 2769, 4107, 4118
BstAFI	CTTAAG	1 cut(s)	2447
BstAUI	TGTACA	3 cut(s)	1221, 1386, 4358
BstBI	TTCGAA	2 cut(s)	906, 952
BstDSI	CCRYGG	4 cut(s)	217, 383, 2607, 4290
BstFNI	CGCG	3 cut(s)	219, 1255, 2295
BstH2I	RGCGCY	2 cut(s)	3368, 4138
BstHHI	GCGC	6 cut(s)	1255, 2295, 2596, 3367, 4137, 4263
BstMAI	GTCTC	2 cut(s)	710, 2868
BstNI	CCWGG	4 cut(s)	1565, 2216, 2341, 2640
BstNSI	RCATGY	2 cut(s)	1192, 4359
BstSCI	CCNGG	6 cut(s)	274, 1563, 2214, 2339, 2638, 3306
BstSFI	CTRYAG	2 cut(s)	1328, 1781
BstSLI	GKGCMC	2 cut(s)	1679, 3769
BstUI	CGCG	3 cut(s)	219, 1255, 2295
BstV2I	GAAGAC	3 cut(s)	97, 2049, 2377
BstX2I	RGATCY	2 cut(s)	656, 2045
BstXI	CCANNNNNNTGG	1 cut(s)	3288
BstYI	RGATCY	2 cut(s)	656, 2045
Bsu15I	ATCGAT	1 cut(s)	3981
BsuI	GTATCC	2 cut(s)	1094, 2322
BsuTUI	ATCGAT	1 cut(s)	3981
BtgI	CCRYGG	4 cut(s)	217, 383, 2607, 4290
BtgZI	GCGATG	2 cut(s)	157, 4461
BtrI	CACGTC	1 cut(s)	24
BtsI	GCAGTG	2 cut(s)	1425, 1710
BtsIMutI	CAGTG	5 cut(s)	1425, 1710, 2395, 3216, 4398
BveI	ACCTGC	2 cut(s)	1253, 3808
CciI	TCATGA	3 cut(s)	2517, 3570, 4012
CfoI	GCGC	6 cut(s)	1255, 2295, 2596, 3367, 4137, 4263
Cfr10I	RCCGGY	3 cut(s)	662, 1354, 1857
Cfr13I	GGNCC	5 cut(s)	1037, 1357, 1746, 1855, 3660
Cfr42I	CCGCGG	1 cut(s)	220
ClaI	ATCGAT	1 cut(s)	3981
CseI	GACGC	1 cut(s)	292
CspAI	ACCGGT	1 cut(s)	1857
CspCI	CAANNNNNGTGG	2 cut(s)	2290, 2325
DraIII	CACNNNGTG	1 cut(s)	33
DrdI	GACNNNNNNGTC	1 cut(s)	3818
DseDI	GACNNNNNNGTC	1 cut(s)	3818
EaeI	YGGCCR	5 cut(s)	78, 513, 3257, 3782, 4191
Eam1104I	CTCTTC	5 cut(s)	1971, 2689, 2769, 4107, 4118
EarI	CTCTTC	5 cut(s)	1971, 2689, 2769, 4107, 4118
Ecl136II	GAGCTC	2 cut(s)	131, 266
Eco130I	CCWWGG	5 cut(s)	383, 2077, 2607, 3444, 3843
Eco24I	GRGCYC	2 cut(s)	133, 268
Eco32I	GATATC	2 cut(s)	2670, 3827
Eco47I	GGWCC	3 cut(s)	1357, 1746, 1855
Eco47III	AGCGCT	1 cut(s)	4136
Eco53kI	GAGCTC	2 cut(s)	131, 266
Eco57I	CTGAAG	6 cut(s)	753, 2371, 2670, 2910, 3945, 4281
Eco88I	CYCGRG	2 cut(s)	199, 4466
EcoICRI	GAGCTC	2 cut(s)	131, 266
EcoO109I	RGGNCCY	1 cut(s)	1037
EcoRII	CCWGG	4 cut(s)	1563, 2214, 2339, 2638
EcoRV	GATATC	2 cut(s)	2670, 3827
EcoT14I	CCWWGG	5 cut(s)	383, 2077, 2607, 3444, 3843
EcoT38I	GRGCYC	2 cut(s)	133, 268
ErhI	CCWWGG	5 cut(s)	383, 2077, 2607, 3444, 3843
FalI	AAGNNNNNCTT	2 cut(s)	1217, 1249
FaqI	GGGAC	9 cut(s)	105, 258, 1474, 1759, 2050, 2134, 2176, 3622, 4257
FauI	CCCGC	4 cut(s)	224, 495, 2111, 3958
FauNDI	CATATG	1 cut(s)	3995
FbaI	TGATCA	3 cut(s)	1011, 1554, 3154
FriOI	GRGCYC	2 cut(s)	133, 268
FspBI	CTAG	4 cut(s)	449, 2855, 3527, 4026
FspI	TGCGCA	1 cut(s)	2595
GlaI	GCGC	6 cut(s)	1254, 2294, 2595, 3366, 4136, 4262
GsaI	CCCAGC	2 cut(s)	1746, 1960
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	2 cut(s)	3368, 4138
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	6 cut(s)	1255, 2295, 2596, 3367, 4137, 4263
Hin6I	GCGC	6 cut(s)	1253, 2293, 2594, 3365, 4135, 4261
HinP1I	GCGC	6 cut(s)	1253, 2293, 2594, 3365, 4135, 4261
HincII	GTYRAC	3 cut(s)	2008, 2485, 4303
HindII	GTYRAC	3 cut(s)	2008, 2485, 4303
Hpy99I	CGWCG	3 cut(s)	286, 3242, 3686
HpyCH4IV	ACGT	2 cut(s)	23, 855
HpySE526I	ACGT	2 cut(s)	23, 855
HspAI	GCGC	6 cut(s)	1253, 2293, 2594, 3365, 4135, 4261
Kpn2I	TCCGGA	1 cut(s)	2099
KpnI	GGTACC	1 cut(s)	3307
Ksp22I	TGATCA	3 cut(s)	1011, 1554, 3154
KspI	CCGCGG	1 cut(s)	220
LguI	GCTCTTC	1 cut(s)	4118
MaeI	CTAG	4 cut(s)	449, 2855, 3527, 4026
MaeII	ACGT	2 cut(s)	23, 855
MaeIII	GTNAC	7 cut(s)	332, 754, 2360, 2470, 3028, 3311, 3725
MbiI	CCGCTC	2 cut(s)	884, 4515
MfeI	CAATTG	3 cut(s)	2028, 2166, 3033
MflI	RGATCY	2 cut(s)	656, 2045
MhlI	GDGCHC	8 cut(s)	133, 268, 1154, 1668, 1679, 2630, 3225, 3769
MlsI	TGGCCA	3 cut(s)	515, 3259, 3784
MluNI	TGGCCA	3 cut(s)	515, 3259, 3784
MlyI	GAGTC	5 cut(s)	301, 429, 1619, 4298, 4442
MmeI	TCCRAC	5 cut(s)	884, 936, 1252, 1593, 1833
Mox20I	TGGCCA	3 cut(s)	515, 3259, 3784
MroI	TCCGGA	1 cut(s)	2099
MroXI	GAANNNNTTC	1 cut(s)	2056
MscI	TGGCCA	3 cut(s)	515, 3259, 3784
Msp20I	TGGCCA	3 cut(s)	515, 3259, 3784
MspA1I	CMGCKG	4 cut(s)	219, 2725, 2990, 3965
MspCI	CTTAAG	1 cut(s)	2447
MspR9I	CCNGG	6 cut(s)	276, 1565, 2216, 2341, 2640, 3308
MunI	CAATTG	3 cut(s)	2028, 2166, 3033
Mva1269I	GAATGC	3 cut(s)	2677, 3472, 3870
MvaI	CCWGG	4 cut(s)	1565, 2216, 2341, 2640
MvnI	CGCG	3 cut(s)	219, 1255, 2295
NciI	CCSGG	2 cut(s)	276, 3308
NcoI	CCATGG	2 cut(s)	383, 2607
NdeI	CATATG	1 cut(s)	3995
NlaIV	GGNNCC	6 cut(s)	658, 1747, 1788, 3305, 3502, 3957
NmeAIII	GCCGAG	4 cut(s)	1164, 1229, 1631, 2653
NmuCI	GTSAC	3 cut(s)	754, 2360, 3028
NsbI	TGCGCA	1 cut(s)	2595
NspI	RCATGY	2 cut(s)	1192, 4359
NspV	TTCGAA	2 cut(s)	906, 952
OliI	CACNNNNGTG	2 cut(s)	341, 1418
PaeI	GCATGC	1 cut(s)	1192
PaeR7I	CTCGAG	2 cut(s)	199, 4466
PagI	TCATGA	3 cut(s)	2517, 3570, 4012
PciSI	GCTCTTC	1 cut(s)	4118
PcsI	WCGNNNNNNNCGW	4 cut(s)	29, 38, 3987, 4319
PctI	GAATGC	3 cut(s)	2677, 3472, 3870
PdmI	GAANNNNTTC	1 cut(s)	2056
PflMI	CCANNNNNTGG	2 cut(s)	3510, 3791
PfoI	TCCNGGA	1 cut(s)	274
PinAI	ACCGGT	1 cut(s)	1857
PleI	GAGTC	5 cut(s)	301, 429, 1618, 4298, 4442
PpsI	GAGTC	5 cut(s)	301, 429, 1618, 4298, 4442
PshBI	ATTAAT	1 cut(s)	783
Psp124BI	GAGCTC	2 cut(s)	133, 268
Psp6I	CCWGG	4 cut(s)	1563, 2214, 2339, 2638
PspFI	CCCAGC	2 cut(s)	1742, 1956
PspGI	CCWGG	4 cut(s)	1563, 2214, 2339, 2638
PspN4I	GGNNCC	6 cut(s)	658, 1747, 1788, 3305, 3502, 3957
PspPI	GGNCC	5 cut(s)	1037, 1357, 1746, 1855, 3660
PspXI	VCTCGAGB	1 cut(s)	199
PstI	CTGCAG	2 cut(s)	1332, 1785
PsuI	RGATCY	2 cut(s)	656, 2045
PvuII	CAGCTG	2 cut(s)	2725, 2990
SacI	GAGCTC	2 cut(s)	133, 268
SacII	CCGCGG	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	4118
Sau96I	GGNCC	5 cut(s)	1037, 1357, 1746, 1855, 3660
ScaI	AGTACT	3 cut(s)	447, 2445, 2650
SchI	GAGTC	5 cut(s)	301, 429, 1619, 4298, 4442
ScrFI	CCNGG	6 cut(s)	276, 1565, 2216, 2341, 2640, 3308
SduI	GDGCHC	8 cut(s)	133, 268, 1154, 1668, 1679, 2630, 3225, 3769
SfcI	CTRYAG	2 cut(s)	1328, 1781
Sfr274I	CTCGAG	2 cut(s)	199, 4466
Sfr303I	CCGCGG	1 cut(s)	220
SfuI	TTCGAA	2 cut(s)	906, 952
SgrBI	CCGCGG	1 cut(s)	220
SinI	GGWCC	3 cut(s)	1357, 1746, 1855
SlaI	CTCGAG	2 cut(s)	199, 4466
SmlI	CTYRAG	8 cut(s)	199, 739, 1234, 1827, 2447, 3054, 4044, 4466
SmoI	CTYRAG	8 cut(s)	199, 739, 1234, 1827, 2447, 3054, 4044, 4466
SpeI	ACTAGT	1 cut(s)	448
SphI	GCATGC	1 cut(s)	1192
SspI	AATATT	2 cut(s)	2421, 3610
SspMI	CTAG	4 cut(s)	449, 2855, 3527, 4026
SstI	GAGCTC	2 cut(s)	133, 268
StyD4I	CCNGG	6 cut(s)	274, 1563, 2214, 2339, 2638, 3306
StyI	CCWWGG	5 cut(s)	383, 2077, 2607, 3444, 3843
TaiI	ACGT	2 cut(s)	26, 858
TauI	GCSGC	3 cut(s)	222, 225, 2298
TscAI	CASTG	5 cut(s)	1425, 1717, 2395, 3223, 4398
TseFI	GTSAC	3 cut(s)	754, 2360, 3028
Tsp45I	GTSAC	3 cut(s)	754, 2360, 3028
TspGWI	ACGGA	4 cut(s)	34, 2763, 3512, 4328
TspRI	CASTG	5 cut(s)	1425, 1717, 2395, 3223, 4398
Van91I	CCANNNNNTGG	2 cut(s)	3510, 3791
Vha464I	CTTAAG	1 cut(s)	2447
VneI	GTGCAC	1 cut(s)	1675
VpaK11BI	GGWCC	3 cut(s)	1357, 1746, 1855
VspI	ATTAAT	1 cut(s)	783
XapI	RAATTY	3 cut(s)	1776, 3132, 4524
XbaI	TCTAGA	1 cut(s)	3526
XceI	RCATGY	2 cut(s)	1192, 4359
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3478, 3511
XhoI	CTCGAG	2 cut(s)	199, 4466
XmnI	GAANNNNTTC	1 cut(s)	2056
XspI	CTAG	4 cut(s)	449, 2855, 3527, 4026
ZrmI	AGTACT	3 cut(s)	447, 2445, 2650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.