Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005776

Physical Location & Seq

Genomic Coordinates Forward (+)

56310313 .. 56317245

Gene Structure 6933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26362

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4533 bp

ATGGCTGCTGGGTCTTGGATCACGTCCACCTCGTGTTCCTCGTCCGTGATTCAATCCCAAGACGACACCTCAGCTCCAGCCATCTTCCAATGGCTGAGATTCGTCTTCCTCTCCCCCTGTCCCCAGAGAGCTCTGTTATCCTCCATTGATCTCTTGTTCCTGCTCGCCCTCATCGCCTTCTCAGTCCAAAAGCTCTACTCGAGGTTCACCTCCCCCCGCGGCGGCGGCAGCTCGGAACTCGATAAGCCGTTGATAACAAACAGCAGAGCTCGCCGTCCCGGAACGACGCTCCGTTTCAAGCTCTCTCTGACTCTCAGCGTTTTCTTGACACTCTGTTACACCGTAGTGTGCATTTTCGTGTTTACAAGAGGAAGTCCTGACTTCCCATGGAAGATCATAGATGGGTTGTTTTGGCTGGTGCAAGCTATAACTCATGGACTCATTACGGTACTGGTGGCACATGAAAAGAGATTTGAAGCTGTCAAGCACCCGCTTTCGCTTCGTATTTACTGGGTGGCCAATTCCGTTGCGGTTTCTCTGTTTGCAGCTTCTGGAGTGATTCGTTTGGTTTACAGTGAAGGAGGTTTGAGATTGGATGATGTAGTTTCCATTGTGTCTTTTCCTTTATCGGCTGTTCTTGCTGTTGTTGCGGTTAGAGGATCCACTGGCATTAGAGTGATGAACAGAGAACAATCTAATGGAGGAGAAAACGGTGTGGAGACTAAATTGCATGAGCCCCTCTTGAGCAAATCCAATGTGACTGGTTTTGCTTCAGCTTCATTCATTAATAAAACCTTTTGGGTTTGGATGAATCCTCTGCTCAGTCAAGGGTACAAATCCCCCTTGAAGGTTGATGACGTTCCAACACTGGCTCCACAACACAGAGCCGAAAGAATGTCGGTGATTTTCGAATCCAATTGGCCTAAACCGGAGGAGAAGTCAGAGCATCCGGTTCGAACCACATTGCTCCGGTGCTTCTGGAAAGATATTGCTTTCACAGCTTCTCTTGCGGTGATCAGGCTGTGTGTCATGTATGTGGGGCCTGTGCTTATCCAGAGCTTTGTGGATTTCACTAATGGGAAACGAAGCTCGCCGTTTGAGGGATACTACCTTGTGTTGATTCTTCTGTGTGCCAAGTTCGTTGAGGTTTTGAGCACTCACCAGTTCAACTTCAACTCACAGAAACTCGGCATGCTCATAAGATCAACTCTCATAACTTCTCTGTACAGGAAGGGCTTGAGGCTGACCTGCTCGGCACGACAAGCTCATGGTGTTGGACAGATTGTGAATTACATGGCTGTGGATGCTCAGCAGCTCTCTGACATGATGCTGCAGCTTCATGCTATATGGATGATGCCGGTCCAGCTCACCATTGCTTTAATCCTGCTGTACAACAACCTCGGTGCAGCTACAATCACAGCAGTGATTGGAATCATGGGTGTGCTTGTGTTTGTGGTGTTTGGGACGAGAAGGAACAACAGGTTTCAGTTCAATCTGATGAAGCAAAGGGATTCGAGGATGAAGGCGACAAACGAGATGCTTAACTACATGAGGGTGATCAAGTTCCAGGCTTGGGAGGAACACTTCAACAAGAGGATTCAGACTTTTCGTCAGTCGGAGTTTAGCTGGCTGACCAAGTTCATGTACTCCATCTCGGCTAATGTTGTGCTCATGTGGTGCACTCCCATACTTATATCAACCCTCACATTTGCCACTGCCTTGTATTTGGGTGTCAAACTTGATGCTGGGACCGTGTTCACTACCACAACCATTTTCAAAATTCTGCAGGAGCCTATTAGGACATTCCCACAATCTATGATTTCAATTTCTCAAGCTATGATCTCGCTTGGGAGGTTGGACCGGTATATGAGTAGTAGGGAACTGGTGGAGGGTTCGGTTGAGAGAGAAGAAGGTTGTGATAGTAGTGTTGCTGTGGAGGTTAAGAATGGTGCATTTAGCTGGGATGATGAAAGTAATGAAGAGGTTTTGAAGAATATAAACTTGACTATCAACAAAGGTGAGCTAACCGCGATTGTTGGGACAGTAGGATCTGGAAAGTCTTCCCTGCTGGCCTCAATCCTTGGGGAGATGCACAAATTATCCGGAAAGGTAAAAGTTTGCGGGACAACTGCCTATGTGGCTCAAACATCATGGATTCAAAATGGGACAATTGAAGAAAACATCCTATTTGGTTCGCCAATGGACAGAGCGAGATACCAGGAAGTTATGAGGGTCTGTTGCTTGGAAAAGGACATGGAAATGATGGAGTATGGAGATCAAACTGAAATAGGAGAGCGCGGCATCAACCTAAGTGGTGGACAGAAACAAAGGATACAGCTTGCCAGGGCAGTATATCAGGACTGTGACATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACCGGATCAGAAATATTCAAGGAATGTGTACGGGGAGTACTTAAGAACAAGACCATTTTGCTCGTAACCCATCAAGTTGACTTCTTGCATAATGTTGATCTTATTATGGTCATGAGAGAAGGAATGATAGTACAAGCAGGAAAGTACAACGATTTGTTAAGCCTCGATTTCAAAGCACTTGTAGTTGCGCATGAAAGCTCCATGGAGCTTGTAGAAATGAGCACAGCTATGCCTGGTGAAAGTACTTCTCCCAAACCACAGATATCTCGGCAGTCCTCTTCAAAACATGGAGAAGCCAATGGCGAAAACAACTCTCAGCTGGTCGAACCCAAGTCCAAAGACGGAACATCTAAGCTCATCAAAGAAGAGGAGAAAGAATCAGGCAAAGTCAGCTTGCAGAATTACAAAATCTATTGCACAGAGGCTTTTGGATGGTGGGGTGTGGTGCTAGTGTTGTCTCTCTCTCTTTTGTGGCAAGGATCACTAATGGCTGGTGATTATTGGCTGGCCTATGAAACTTCAGCAAAGCGAGCATTGTCATTCGATCCTTCTGTGTTCATTACTGTCTATGCTATTATCGCAGCTGTTTCATTCTTCGTGGTATTGGTAAGAGCATTTTCTGTAACAATTGTGGGGCTTACAACAGCTCAAGTTTTCTTCAAGCAGATTCTTCACAGCATCCTTCATGCCCCCATGTCATTTTTCGATACTACACCTTCTGGAAGAATTTTGAGTAGGGCATCAACTGATCAGACGAATATCGACTTATTTCTTCCCTTCATTTTGGGCATTACCATTGCCATGTATATCACTGTGCTCAGTATCTTTATCGTCGTATGTCAAAACTCATGGCCAACAATCTTCTTACTCATACCACTTCTTTGGCTGAATATCTGGTACCGGGGTTACTATCTTGCATCATCTCGTGAATTAACTCGACTTGATTCAATCACAAAAGCGCCTGTTATCCATCATTTCTCAGAAAGCATATCTGGGGTTATGACAATCCGATCTTTCAGAAACCAGAACAAGTTTACCAAGGAAAATGTTAGGAGAGTGAATGCCAATTTGCGTATGGATTTCCACAATAACGGCTCCAATGAGTGGTTGGGATTCCGTCTAGAACTGCTTGGGAGCTTAATCCTCTGCATTTCCACTTTGTTCATGATCTTGCTGCCAAGCAGTATAGTAAAGCCAGAGAATATTGGCTTATCACTCTCCTATGGATTGTCCCTCAACGGTGTACTATTTTGGGCCATATATATGAGCTGCTTCGTAGAAAATAGGATGGTGTCAGTTGAGAGGATAAAGCAGTTTTGTAACATTCCATCAGAAGCAGCATGGAAGATAGTAGATCGTGCCCCTCCTACGAATTGGCCAACTCATGGCAATGTTGAGCTGAAAGACTTGCAGGTCAGATATCGTCCGAATACTCCCTTGGTTCTCAAAGGCATTAGTCTGAGCATTCATGGGGGTGAGAAGGTCGGTGTTGTTGGTCGAACGGGGAGTGGGAAATCCACTTTAATTCAGGTGTTCTTTAGGCTGGTGGAACCTTCAGCGGGAAAAATTATCATCGATGGCATCGACATATGCACGATAGGGCTTCATGATCTCCGGTCTAGCTTTGGGATCATTCCTCAAGAACCTGTCCTTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATCGGGGTGTATTCAGATGAAGAGATTTGGAAGAGCTTGGAGCGCTGCCAACTTAAAGATGTTGTTGCTGCAAAACCCAAAAAACTCGATGCTTTAGTGGCCGATGATGGAGATAATTGGAGCGTGGGGCAAAGACAGCTTCTTTGTTTGGGACGAGTTATGTTAAAGCGCAGCAGGCTGTTGTTCATGGATGAGGCCACGGCTTCAGTTGACTCACAGACGGATGCTGCGATACAAAAGATCATCAGAGAGGACTTTGCTGCATGTACAATCATCAGCATTGCTCACAGAATACCAACAGTGATGGACTGCAATAGAGTTTTAGTAGTAGATGCAGGAAGGGCTAAAGAGTTTGACTCACCAACACACTTGCTCGAGAGGCCATCGCTGTTTGGGGCATTGGTTCAGGAGTATGCCAACCGCTCAGCAGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009624 GO:0009628 GO:0009987 GO:0010035 GO:0010118 GO:0012505 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1510

Amino Acids

168.63

Weight (kDa)

8.69

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	335 - 598	6.3e-25	ABC transporter transmembrane region
ABC_tran	PF00005	663 - 796	2.1e-21	ABC transporter
ABC_membrane	PF00664	984 - 1204	3.9e-30	ABC transporter transmembrane region
ABC_tran	PF00005	1285 - 1433	4.1e-26	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47800 AT3G62700
fragaria_vesca	FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570
malus_domestica	MD03G1286300.v1.1 MD11G1313300.v1.1 MD11G1313800.v1.1 MD11G1314300.v1.1
prunus_persica	Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1
pyrus_communis	pycom03g22680 pycom03g22690 pycom11g27270
rosa_chinensis	RchiOBHm_Chr6g0293781
rosa_laevigata	RLG00000011924
rosa_multiflora	Rmu_sc0005641.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173910
rosa_rugosa	Rorug06G0238000
rosa_samantha	Rh6AG351300 Rh6BG358200 Rh6DG352000
rosa_wichuraiana	Rw6G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3821
Acc16I	TGCGCA	1 cut(s)	2598
Acc36I	ACCTGC	2 cut(s)	1256, 3811
Acc65I	GGTACC	1 cut(s)	3306
AccB1I	GGYRCC	1 cut(s)	3306
AccB7I	CCANNNNNTGG	2 cut(s)	3513, 3794
AccBSI	CCGCTC	1 cut(s)	4518
AccII	CGCG	3 cut(s)	219, 2030, 2298
AccIII	TCCGGA	1 cut(s)	2102
AclWI	GGATC	9 cut(s)	26, 654, 667, 2056, 2422, 2896, 2948, 4046, 4085
AcoI	YGGCCR	4 cut(s)	516, 3260, 3785, 4194
AcsI	RAATTY	3 cut(s)	1779, 3135, 4527
AcuI	CTGAAG	5 cut(s)	756, 2374, 2913, 3948, 4284
AdeI	CACNNNGTG	1 cut(s)	33
AfeI	AGCGCT	1 cut(s)	4139
AfiI	CCNNNNNNNGG	7 cut(s)	221, 847, 1100, 1573, 3513, 3794, 3968
AflII	CTTAAG	1 cut(s)	2450
AgeI	ACCGGT	1 cut(s)	1860
AhdI	GACNNNNNGTC	1 cut(s)	1608
AjiI	CACGTC	1 cut(s)	24
AjnI	CCWGG	4 cut(s)	1566, 2217, 2342, 2641
AjuI	GAANNNNNNNTTGG	2 cut(s)	3830, 3862
AleI	CACNNNNGTG	2 cut(s)	344, 1421
Alw21I	GWGCWC	7 cut(s)	133, 271, 1157, 1671, 1682, 2633, 3228
Alw26I	GTCTC	2 cut(s)	713, 2871
Alw44I	GTGCAC	1 cut(s)	1678
AlwI	GGATC	9 cut(s)	26, 654, 667, 2056, 2422, 2896, 2948, 4046, 4085
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	2 cut(s)	199, 4469
Aor13HI	TCCGGA	1 cut(s)	2102
Aor51HI	AGCGCT	1 cut(s)	4139
ApaLI	GTGCAC	1 cut(s)	1678
ApoI	RAATTY	3 cut(s)	1779, 3135, 4527
ArsI	GACNNNNNNTTYG	2 cut(s)	4221, 4253
AseI	ATTAAT	1 cut(s)	786
AsiGI	ACCGGT	1 cut(s)	1860
Asp700I	GAANNNNTTC	1 cut(s)	2059
Asp718I	GGTACC	1 cut(s)	3306
AspLEI	GCGC	5 cut(s)	2298, 2599, 3370, 4140, 4266
AspS9I	GGNCC	5 cut(s)	1040, 1360, 1749, 1858, 3663
AsuC2I	CCSGG	2 cut(s)	279, 3311
AsuII	TTCGAA	2 cut(s)	909, 955
AvaI	CYCGRG	2 cut(s)	199, 4469
AvaII	GGWCC	3 cut(s)	1360, 1749, 1858
BaeGI	GKGCMC	2 cut(s)	1682, 3772
BaeI	ACNNNNGTAYC	2 cut(s)	3298, 3331
BalI	TGGCCA	3 cut(s)	518, 3262, 3787
BamHI	GGATCC	1 cut(s)	659
BanI	GGYRCC	1 cut(s)	3306
BanII	GRGCYC	3 cut(s)	133, 271, 738
BauI	CACGAG	2 cut(s)	31, 3333
BbsI	GAAGAC	3 cut(s)	97, 2052, 2380
Bbv12I	GWGCWC	7 cut(s)	133, 271, 1157, 1671, 1682, 2633, 3228
BbvCI	CCTCAGC	1 cut(s)	70
BceAI	ACGGC	5 cut(s)	232, 258, 1078, 3517, 4311
BcgI	CGANNNNNNTGC	2 cut(s)	935, 969
BciT130I	CCWGG	4 cut(s)	1568, 2219, 2344, 2643
BciVI	GTATCC	2 cut(s)	1097, 2325
BclI	TGATCA	3 cut(s)	1014, 1557, 3157
BcnI	CCSGG	2 cut(s)	279, 3311
BcoDI	GTCTC	2 cut(s)	713, 2871
BfaI	CTAG	3 cut(s)	2858, 3530, 4029
BfmI	CTRYAG	2 cut(s)	1331, 1784
BfoI	RGCGCY	2 cut(s)	3371, 4141
BfrI	CTTAAG	1 cut(s)	2450
BfuAI	ACCTGC	2 cut(s)	1256, 3811
BfuI	GTATCC	2 cut(s)	1097, 2325
BglI	GCCNNNNNGGC	1 cut(s)	2138
BlpI	GCTNAGC	2 cut(s)	1308, 4519
BmcAI	AGTACT	2 cut(s)	2448, 2653
Bme1390I	CCNGG	6 cut(s)	279, 1568, 2219, 2344, 2643, 3311
Bme18I	GGWCC	3 cut(s)	1360, 1749, 1858
BmeRI	GACNNNNNGTC	1 cut(s)	1608
BmeT110I	CYCGRG	2 cut(s)	199, 4469
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	5 cut(s)	1040, 1360, 1749, 1858, 3663
BmiI	GGNNCC	8 cut(s)	661, 873, 1041, 1750, 1791, 3308, 3505, 3960
BmrFI	CCNGG	6 cut(s)	279, 1568, 2219, 2344, 2643, 3311
BmrI	ACTGGG	1 cut(s)	520
BmuI	ACTGGG	1 cut(s)	520
BpiI	GAAGAC	3 cut(s)	97, 2052, 2380
BplI	GAGNNNNNCTC	2 cut(s)	4436, 4468
BpmI	CTGGAG	2 cut(s)	60, 573
Bpu10I	CCTNAGC	1 cut(s)	70
Bpu1102I	GCTNAGC	2 cut(s)	1308, 4519
Bpu14I	TTCGAA	2 cut(s)	909, 955
BpuEI	CTTGAG	5 cut(s)	763, 1258, 1815, 3042, 4032
BpuMI	CCSGG	2 cut(s)	279, 3311
Bsa29I	ATCGAT	1 cut(s)	3984
BsaBI	GATNNNNATC	1 cut(s)	1430
BsaWI	WCCGGW	7 cut(s)	928, 949, 969, 1860, 2102, 2411, 4023
BsaXI	ACNNNNNCTCC	6 cut(s)	58, 88, 856, 886, 923, 953
Bsc4I	CCNNNNNNNGG	7 cut(s)	221, 847, 1100, 1573, 3513, 3794, 3968
Bse118I	RCCGGY	2 cut(s)	1357, 1860
Bse1I	ACTGG	7 cut(s)	456, 515, 670, 766, 873, 1162, 1887
Bse3DI	GCAATG	5 cut(s)	962, 1371, 3204, 3805, 4374
Bse8I	GATNNNNATC	1 cut(s)	1430
BseAI	TCCGGA	1 cut(s)	2102
BseBI	CCWGG	4 cut(s)	1568, 2219, 2344, 2643
BseCI	ATCGAT	1 cut(s)	3984
BseJI	GATNNNNATC	1 cut(s)	1430
BseLI	CCNNNNNNNGG	7 cut(s)	221, 847, 1100, 1573, 3513, 3794, 3968
BseMI	GCAATG	5 cut(s)	962, 1371, 3204, 3805, 4374
BseNI	ACTGG	7 cut(s)	456, 515, 670, 766, 873, 1162, 1887
BseRI	GAGGAG	3 cut(s)	717, 947, 2792
BseSI	GKGCMC	2 cut(s)	1682, 3772
BseYI	CCCAGC	3 cut(s)	8, 1745, 1959
BsgI	GTGCAG	1 cut(s)	1425
Bsh1236I	CGCG	3 cut(s)	219, 2030, 2298
BshNI	GGYRCC	1 cut(s)	3306
BshTI	ACCGGT	1 cut(s)	1860
BshVI	ATCGAT	1 cut(s)	3984
BsiHKAI	GWGCWC	7 cut(s)	133, 271, 1157, 1671, 1682, 2633, 3228
BsiHKCI	CYCGRG	2 cut(s)	199, 4469
BslFI	GGGAC	9 cut(s)	105, 261, 1477, 1762, 2053, 2137, 2179, 3625, 4260
BslI	CCNNNNNNNGG	7 cut(s)	221, 847, 1100, 1573, 3513, 3794, 3968
BsmAI	GTCTC	2 cut(s)	713, 2871
BsmFI	GGGAC	9 cut(s)	105, 261, 1477, 1762, 2053, 2137, 2179, 3625, 4260
BsmI	GAATGC	2 cut(s)	3475, 3873
BsoBI	CYCGRG	2 cut(s)	199, 4469
Bsp119I	TTCGAA	2 cut(s)	909, 955
Bsp1286I	GDGCHC	9 cut(s)	133, 271, 738, 1157, 1671, 1682, 2633, 3228, 3772
Bsp13I	TCCGGA	1 cut(s)	2102
Bsp1407I	TGTACA	3 cut(s)	1224, 1389, 4361
Bsp1720I	GCTNAGC	2 cut(s)	1308, 4519
Bsp19I	CCATGG	2 cut(s)	386, 2610
BspDI	ATCGAT	1 cut(s)	3984
BspEI	TCCGGA	1 cut(s)	2102
BspFNI	CGCG	3 cut(s)	219, 2030, 2298
BspHI	TCATGA	3 cut(s)	2520, 3573, 4015
BspLI	GGNNCC	8 cut(s)	661, 873, 1041, 1750, 1791, 3308, 3505, 3960
BspMAI	CTGCAG	2 cut(s)	1335, 1788
BspMI	ACCTGC	2 cut(s)	1256, 3811
BspPI	GGATC	9 cut(s)	26, 654, 667, 2056, 2422, 2896, 2948, 4046, 4085
BspQI	GCTCTTC	1 cut(s)	4121
BspT104I	TTCGAA	2 cut(s)	909, 955
BspT107I	GGYRCC	1 cut(s)	3306
BspTI	CTTAAG	1 cut(s)	2450
BsrBI	CCGCTC	1 cut(s)	4518
BsrDI	GCAATG	5 cut(s)	962, 1371, 3204, 3805, 4374
BsrFI	RCCGGY	2 cut(s)	1357, 1860
BsrGI	TGTACA	3 cut(s)	1224, 1389, 4361
BsrI	ACTGG	7 cut(s)	456, 515, 670, 766, 873, 1162, 1887
BssAI	RCCGGY	2 cut(s)	1357, 1860
BssSI	CACGAG	2 cut(s)	31, 3333
BssT1I	CCWWGG	5 cut(s)	386, 2080, 2610, 3447, 3846
Bst2BI	CACGAG	2 cut(s)	31, 3333
Bst2UI	CCWGG	4 cut(s)	1568, 2219, 2344, 2643
Bst6I	CTCTTC	5 cut(s)	1974, 2692, 2769, 4110, 4121
BstAFI	CTTAAG	1 cut(s)	2450
BstAUI	TGTACA	3 cut(s)	1224, 1389, 4361
BstBI	TTCGAA	2 cut(s)	909, 955
BstDSI	CCRYGG	4 cut(s)	217, 386, 2610, 4293
BstFNI	CGCG	3 cut(s)	219, 2030, 2298
BstH2I	RGCGCY	2 cut(s)	3371, 4141
BstHHI	GCGC	5 cut(s)	2298, 2599, 3370, 4140, 4266
BstMAI	GTCTC	2 cut(s)	713, 2871
BstNI	CCWGG	4 cut(s)	1568, 2219, 2344, 2643
BstNSI	RCATGY	2 cut(s)	1195, 4362
BstSCI	CCNGG	6 cut(s)	277, 1566, 2217, 2342, 2641, 3309
BstSFI	CTRYAG	2 cut(s)	1331, 1784
BstSLI	GKGCMC	2 cut(s)	1682, 3772
BstUI	CGCG	3 cut(s)	219, 2030, 2298
BstV2I	GAAGAC	3 cut(s)	97, 2052, 2380
BstX2I	RGATCY	2 cut(s)	659, 2048
BstXI	CCANNNNNNTGG	1 cut(s)	3291
BstYI	RGATCY	2 cut(s)	659, 2048
Bsu15I	ATCGAT	1 cut(s)	3984
BsuI	GTATCC	2 cut(s)	1097, 2325
BsuTUI	ATCGAT	1 cut(s)	3984
BtgI	CCRYGG	4 cut(s)	217, 386, 2610, 4293
BtgZI	GCGATG	2 cut(s)	157, 4464
BtrI	CACGTC	1 cut(s)	24
BtsI	GCAGTG	2 cut(s)	1428, 1713
BtsIMutI	CAGTG	8 cut(s)	580, 663, 866, 1428, 1713, 2398, 3219, 4401
BveI	ACCTGC	2 cut(s)	1256, 3811
CaiI	CAGNNNCTG	1 cut(s)	551
CciI	TCATGA	3 cut(s)	2520, 3573, 4015
CfoI	GCGC	5 cut(s)	2298, 2599, 3370, 4140, 4266
Cfr10I	RCCGGY	2 cut(s)	1357, 1860
Cfr13I	GGNCC	5 cut(s)	1040, 1360, 1749, 1858, 3663
Cfr42I	CCGCGG	1 cut(s)	220
ClaI	ATCGAT	1 cut(s)	3984
CseI	GACGC	1 cut(s)	295
CspAI	ACCGGT	1 cut(s)	1860
CspCI	CAANNNNNGTGG	2 cut(s)	2293, 2328
DraIII	CACNNNGTG	1 cut(s)	33
DrdI	GACNNNNNNGTC	1 cut(s)	3821
DriI	GACNNNNNGTC	1 cut(s)	1608
DseDI	GACNNNNNNGTC	1 cut(s)	3821
EaeI	YGGCCR	4 cut(s)	516, 3260, 3785, 4194
Eam1104I	CTCTTC	5 cut(s)	1974, 2692, 2769, 4110, 4121
Eam1105I	GACNNNNNGTC	1 cut(s)	1608
EarI	CTCTTC	5 cut(s)	1974, 2692, 2769, 4110, 4121
Ecl136II	GAGCTC	2 cut(s)	131, 269
Eco130I	CCWWGG	5 cut(s)	386, 2080, 2610, 3447, 3846
Eco24I	GRGCYC	3 cut(s)	133, 271, 738
Eco32I	GATATC	2 cut(s)	2673, 3830
Eco47I	GGWCC	3 cut(s)	1360, 1749, 1858
Eco47III	AGCGCT	1 cut(s)	4139
Eco53kI	GAGCTC	2 cut(s)	131, 269
Eco57I	CTGAAG	5 cut(s)	756, 2374, 2913, 3948, 4284
Eco88I	CYCGRG	2 cut(s)	199, 4469
EcoICRI	GAGCTC	2 cut(s)	131, 269
EcoO109I	RGGNCCY	1 cut(s)	1040
EcoRII	CCWGG	4 cut(s)	1566, 2217, 2342, 2641
EcoRV	GATATC	2 cut(s)	2673, 3830
EcoT14I	CCWWGG	5 cut(s)	386, 2080, 2610, 3447, 3846
EcoT38I	GRGCYC	3 cut(s)	133, 271, 738
ErhI	CCWWGG	5 cut(s)	386, 2080, 2610, 3447, 3846
FaqI	GGGAC	9 cut(s)	105, 261, 1477, 1762, 2053, 2137, 2179, 3625, 4260
FauI	CCCGC	4 cut(s)	224, 498, 2114, 3961
FauNDI	CATATG	1 cut(s)	3998
FbaI	TGATCA	3 cut(s)	1014, 1557, 3157
FriOI	GRGCYC	3 cut(s)	133, 271, 738
FspBI	CTAG	3 cut(s)	2858, 3530, 4029
FspI	TGCGCA	1 cut(s)	2598
GlaI	GCGC	5 cut(s)	2297, 2598, 3369, 4139, 4265
GsaI	CCCAGC	3 cut(s)	12, 1749, 1963
GsuI	CTGGAG	2 cut(s)	60, 573
HaeII	RGCGCY	2 cut(s)	3371, 4141
HgaI	GACGC	1 cut(s)	295
HhaI	GCGC	5 cut(s)	2298, 2599, 3370, 4140, 4266
Hin6I	GCGC	5 cut(s)	2296, 2597, 3368, 4138, 4264
HinP1I	GCGC	5 cut(s)	2296, 2597, 3368, 4138, 4264
HincII	GTYRAC	2 cut(s)	2488, 4306
HindII	GTYRAC	2 cut(s)	2488, 4306
Hpy99I	CGWCG	2 cut(s)	289, 3245
HpyCH4IV	ACGT	2 cut(s)	23, 858
HpySE526I	ACGT	2 cut(s)	23, 858
HspAI	GCGC	5 cut(s)	2296, 2597, 3368, 4138, 4264
Kpn2I	TCCGGA	1 cut(s)	2102
KpnI	GGTACC	1 cut(s)	3310
Ksp22I	TGATCA	3 cut(s)	1014, 1557, 3157
KspI	CCGCGG	1 cut(s)	220
LguI	GCTCTTC	1 cut(s)	4121
MaeI	CTAG	3 cut(s)	2858, 3530, 4029
MaeII	ACGT	2 cut(s)	23, 858
MaeIII	GTNAC	7 cut(s)	335, 757, 2363, 2473, 3031, 3314, 3728
MbiI	CCGCTC	1 cut(s)	4518
MfeI	CAATTG	3 cut(s)	916, 2169, 3036
MflI	RGATCY	2 cut(s)	659, 2048
MhlI	GDGCHC	9 cut(s)	133, 271, 738, 1157, 1671, 1682, 2633, 3228, 3772
MlsI	TGGCCA	3 cut(s)	518, 3262, 3787
MluNI	TGGCCA	3 cut(s)	518, 3262, 3787
MlyI	GAGTC	4 cut(s)	304, 432, 4301, 4445
MmeI	TCCRAC	4 cut(s)	887, 1255, 1596, 1836
Mox20I	TGGCCA	3 cut(s)	518, 3262, 3787
MroI	TCCGGA	1 cut(s)	2102
MroXI	GAANNNNTTC	1 cut(s)	2059
MscI	TGGCCA	3 cut(s)	518, 3262, 3787
Msp20I	TGGCCA	3 cut(s)	518, 3262, 3787
MspA1I	CMGCKG	4 cut(s)	219, 2728, 2993, 3968
MspCI	CTTAAG	1 cut(s)	2450
MspR9I	CCNGG	6 cut(s)	279, 1568, 2219, 2344, 2643, 3311
MunI	CAATTG	3 cut(s)	916, 2169, 3036
Mva1269I	GAATGC	2 cut(s)	3475, 3873
MvaI	CCWGG	4 cut(s)	1568, 2219, 2344, 2643
MvnI	CGCG	3 cut(s)	219, 2030, 2298
NciI	CCSGG	2 cut(s)	279, 3311
NcoI	CCATGG	2 cut(s)	386, 2610
NdeI	CATATG	1 cut(s)	3998
NlaIV	GGNNCC	8 cut(s)	661, 873, 1041, 1750, 1791, 3308, 3505, 3960
NmeAIII	GCCGAG	4 cut(s)	1167, 1232, 1634, 2656
NmuCI	GTSAC	2 cut(s)	757, 2363
NsbI	TGCGCA	1 cut(s)	2598
NspI	RCATGY	2 cut(s)	1195, 4362
NspV	TTCGAA	2 cut(s)	909, 955
OliI	CACNNNNGTG	2 cut(s)	344, 1421
PaeI	GCATGC	1 cut(s)	1195
PaeR7I	CTCGAG	2 cut(s)	199, 4469
PagI	TCATGA	3 cut(s)	2520, 3573, 4015
PciSI	GCTCTTC	1 cut(s)	4121
PcsI	WCGNNNNNNNCGW	4 cut(s)	29, 38, 3990, 4322
PctI	GAATGC	2 cut(s)	3475, 3873
PdmI	GAANNNNTTC	1 cut(s)	2059
PflMI	CCANNNNNTGG	2 cut(s)	3513, 3794
PfoI	TCCNGGA	1 cut(s)	277
PinAI	ACCGGT	1 cut(s)	1860
PleI	GAGTC	4 cut(s)	304, 432, 4301, 4445
PpsI	GAGTC	4 cut(s)	304, 432, 4301, 4445
PshBI	ATTAAT	1 cut(s)	786
Psp124BI	GAGCTC	2 cut(s)	133, 271
Psp6I	CCWGG	4 cut(s)	1566, 2217, 2342, 2641
PspFI	CCCAGC	3 cut(s)	8, 1745, 1959
PspGI	CCWGG	4 cut(s)	1566, 2217, 2342, 2641
PspN4I	GGNNCC	8 cut(s)	661, 873, 1041, 1750, 1791, 3308, 3505, 3960
PspPI	GGNCC	5 cut(s)	1040, 1360, 1749, 1858, 3663
PspXI	VCTCGAGB	1 cut(s)	199
PstI	CTGCAG	2 cut(s)	1335, 1788
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	659, 2048
PvuII	CAGCTG	2 cut(s)	2728, 2993
SacI	GAGCTC	2 cut(s)	133, 271
SacII	CCGCGG	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	4121
Sau96I	GGNCC	5 cut(s)	1040, 1360, 1749, 1858, 3663
ScaI	AGTACT	2 cut(s)	2448, 2653
SchI	GAGTC	4 cut(s)	304, 432, 4301, 4445
ScrFI	CCNGG	6 cut(s)	279, 1568, 2219, 2344, 2643, 3311
SduI	GDGCHC	9 cut(s)	133, 271, 738, 1157, 1671, 1682, 2633, 3228, 3772
SfcI	CTRYAG	2 cut(s)	1331, 1784
Sfr274I	CTCGAG	2 cut(s)	199, 4469
Sfr303I	CCGCGG	1 cut(s)	220
SfuI	TTCGAA	2 cut(s)	909, 955
SgrBI	CCGCGG	1 cut(s)	220
SinI	GGWCC	3 cut(s)	1360, 1749, 1858
SlaI	CTCGAG	2 cut(s)	199, 4469
SmlI	CTYRAG	8 cut(s)	199, 742, 1237, 1830, 2450, 3057, 4047, 4469
SmoI	CTYRAG	8 cut(s)	199, 742, 1237, 1830, 2450, 3057, 4047, 4469
SphI	GCATGC	1 cut(s)	1195
SspI	AATATT	2 cut(s)	2424, 3613
SspMI	CTAG	3 cut(s)	2858, 3530, 4029
SstI	GAGCTC	2 cut(s)	133, 271
StyD4I	CCNGG	6 cut(s)	277, 1566, 2217, 2342, 2641, 3309
StyI	CCWWGG	5 cut(s)	386, 2080, 2610, 3447, 3846
TaiI	ACGT	2 cut(s)	26, 861
TatI	WGTACW	9 cut(s)	1224, 1389, 1644, 2446, 2539, 2553, 2651, 3652, 4361
TauI	GCSGC	4 cut(s)	222, 225, 228, 2301
TscAI	CASTG	8 cut(s)	580, 670, 873, 1428, 1720, 2398, 3226, 4401
TseFI	GTSAC	2 cut(s)	757, 2363
Tsp45I	GTSAC	2 cut(s)	757, 2363
TspGWI	ACGGA	6 cut(s)	34, 281, 514, 2766, 3515, 4331
TspRI	CASTG	8 cut(s)	580, 670, 873, 1428, 1720, 2398, 3226, 4401
Van91I	CCANNNNNTGG	2 cut(s)	3513, 3794
Vha464I	CTTAAG	1 cut(s)	2450
VneI	GTGCAC	1 cut(s)	1678
VpaK11BI	GGWCC	3 cut(s)	1360, 1749, 1858
VspI	ATTAAT	1 cut(s)	786
XapI	RAATTY	3 cut(s)	1779, 3135, 4527
XbaI	TCTAGA	1 cut(s)	3529
XceI	RCATGY	2 cut(s)	1195, 4362
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3481, 3514
XhoI	CTCGAG	2 cut(s)	199, 4469
XmnI	GAANNNNTTC	1 cut(s)	2059
XspI	CTAG	3 cut(s)	2858, 3530, 4029
ZrmI	AGTACT	2 cut(s)	2448, 2653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.