Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005776

Physical Location & Seq

Genomic Coordinates Reverse (-)

13815226 .. 13822290

Gene Structure 7065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011924

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4467 bp

ATGGCTTCTAGGTCTTGGATCACGTCCACCTCGTGTTCCTCGTCCGTGATTCAATCCCAAGACGACACCTCAGCTCCGGCCATCTTCCAATGGCTGAGATTCGTCTTCCTCTCCCCCTGTCCCCAGAGAGCTCTGTTATCCTCCATTGATCTCTTGTTCCTGCTCACCCTCATCGCCTTCTCAATCCAGAAGCTCTACTCGAGGTCCACCTCCCCCCGCGGCGGCAGCTCGGAACTCGATAAGCCGTTGATAACAAACAGCAGAGCTCGCCGTCCCGGAACAACGTTCTGTTTCAAGCTCTCTCTGACTCTGAGCGTTTTCTTGACACTCTGTTACACCGTAGTGTGCATTTTAGCGTTTACAAGAGGAAGTACTGACTTCCCATGGAAGATCATAGATGGGTTGTTTTGGCTGTTTCAAGCTGTAACTCATGGACTCATTACAGTACTAGTGGCACATGAAAAGAGATTTGAAGCTGTCAAGCACCCGCTTTCGCTTCGTATTTACTGGGTGGCCAATTTCGTTGCTGTTTCTCTGTTTGCAACTTCTGGAGTGATTCGTTTGGTTTACAATGAAGAAGGTTTGAGATTGGATGATGTAGTTTCCATTGTGTCTTTTCCTTTATCGGTTGTTCTTGCTGTTGTTGCGGTTAGAGGATCCACTGGCATTAGAGTGATGAACAGAGAACAATCTAATGGAGAAAACGGTGTGGAGACTAAATTGCATGAACCCCTCTTGAGCAAATCCAATGTGACTGGTTTTGCTTCAGCTTCATTCATTAATAAAACATTTTGGGTTTGGATGAATCCTCTGCTCAGTAAAGGGTACAAATCCCCTTTGAAGGTTGATGACGTTCCAACACTGGCTCCACAACACAGAGCCGAAAGAATGTCGGTGATTTTCGAATCCAACTGGCCTAAACCGGAGGAGAAGTCAGAGCATCCGGTTCGAACCACATTGCTCCGGTGCTTCTGGAAAGATATTGCATTCACAGCTTCTCTTGCGGTGATCAGGCTGTGTGTCATGTATGTAGGGCCTGTGCTTATCCAGAGCTTTGTGGATTTCACTAATGGGAAACGAAGCTCGCCGTTTGAGGGATACTACCTTGTGTTGATTCTTCTGTGTGCCAAGTTCGTTGAGGTTTTGACCACTCACCAGTTCAATTTCAACTCACAGAAACTTGGCATGCTCATAAGATCAACTCTCATAACTTCTCTGTACAAGAAGGGCTTGAGGCTGACCTGCTCGGCGCGACAAGCTCATGGTGTTGGACAGATTGTGAATTACATGGCTGTGGATGCTCAGCAGCTCTCTGACATGATGCTGCAGCTTCATGCTATATGGATGATGCCGGTCCAGCTCACCATTGCTTTAATCCTGCTGTACAACAACCTCGGTGCAGCTACAATCACAGCAGTGACTGGAATCATGGGTGTGCTTGTGTTTGTGGTGTTTGGGGTGAGAAGGAACAACAGGTTTCAGTTCAATCTGATGAAACAAAGGGATTCGAGGATGAAGGCGACTAACGAGATGCTTAACTACATGAGGGTGATCAAGTTCCAGGCTTGGGAGGAACACTTCAACAAGAGGATTCAAACTTTTCGCGAGTCAGAGTTTAGCTGGCTGACCAAGTTCATGTACTCCCTCTCGGCTAATGTTGTGCTCATGTGGTGCACTCCCATACTTATATCAACCCTCACATTTGCCACTGCCTTGTATTTGGGTGTCAAACTTGATGCTGGGACCGTGTTCACTACCACAACCATTTTCAAAATTCTGCAGGAGCCTATTAGGACATTCCCACAATCTATGATTTCGATTTCTCAAGCTATGATCTCGCTTGGGAGGTTGGACCGGTATATGAGTAGTAGGGAACTGGTGGAAGGTTCGGTTGAGAGAGAAGAAGGTTGTGATAGTAGTGTTGCTGTGGAGGTTAAGAATGGTGCATTTAGCTGGGATGATGAAAGTAATGAAGAGGTTTTGAAGAATATAAACTTGACTGTCAACAAAGGTGAGCTAACCGCGATTGTTGGGACAGTAGGATCTGGAAAGTCTTCCCTGCTGGCCTCAATCCTTGGTGAGATGCACAAATTATCTGGAAAGGTAAAAGTTTGCGGGACAAATGCCTATGTGGCTCAAACATCATGGATTCAAAATGGGACAATTGAAGAAAACATCCTATTTGGTTCGCCAATGGACAGAGCGAGATACCAGGAAGTTATGAGGGTCTGTTGCTTGGAAAAGGACATGGAAATGATGGAGTATGGAGATCAAACTGAAATAGGAGAGCGCGGCATCAACCTAAGTGGTGGACAGAAACAAAGGATACAGCTTGCCAGGGCAGTATATCAGGATTGTGACATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACCGGATCAGAAATATTCAAGGAATGTGTGCGGGGAGTACTTAAGAACAAGACCATTTTACTTGTAACCCATCAAGTTGACTTCTTGCGTAATGTTGATCTTATTGTGGTCATGAGAGAAGGAATGATAGTACAAGCAGGAAAGTACAACGATTTGCTAAGCCTCGATTTCAAAGCACTTGTAGTTGCGCACGAAAGCTCCATGGAGCTTGTAGAAACGAGCACAGCTATGCCTGGTGAAAGTACTTCTCCCAAACCACAGATATCTCGGCAGTCCTCTTCAAAACATGGAGAAGCCAATGGCGAAAACAACTCTCAGCTGGTCGAACCCAAGTCCAAAGACGGAACATCTAAGCTCATCAAAGAAGAGGAGAAAGAATCAGGCAAAGTCAGCTTGCAGAATTACAAAATCTATTGCACAGAGGCTTTTGGATGGTGGGGTGTGGTGCTAGTGTTGTCTCTCTCTCTTTTGTGGCAAGGAACAATAATGGCTGGTGATTATTGGCTGGCCTATGAAACTTCAGCAAAGCGAGCATTGTCATTCGATCCTTCTGTGTTCATTACTGTCTATGCTATTATCGCAGCTGTTTCATTCTTCGTGGTATTGGTAAGAGCATTTTCTGTGACAATTGTGGGGCTTACAACAGCTCAAGTTTTCTTCAAGCAGATTCTTCACAGCATCCTTCATGCCCCCATGTCATTTTTCGATACTACACCTTCTGGAAGAATTTTGAGTAGGGCATCAACTGATCAGACGAATATCGACTTATTTCTTCCCTTCATTTTGGGCATTACCATTGCCATGTATATCACTGTGCTCAGTATCTTTATCGTCGTATGTCAAAACTCATGGCCAACAATCTTCTTACTCATACCACTGGTTTGGCTGAATATCTGGTACCGGGGTTACTATCTTGCATCATCTCGTGAATTAACTCGACTTGATTCAATCACGAAAGCGCCTGTTATCCATCATTTCTCAGAAAGCATATCTGGGGTTATGACAATCCGATCTTTCAGAAACCAGAACAAGTTTACCAAGGAAAATGTTAGGAGAGTGAATGCCAATTTGCGTATGGATTTCCACAATAACGGCTCCAATGAGTGGTTGGGATTCCGTCTAGAACTGCTTGGGAGCTTAATCCTCTGCATTTCCACTTTGTTCATGATCTTGCTGCCAAGCAATATAGTAAAGCCAGAGAATATTGGCTTATCACTCTCCTATGGATTGTCCCTCAACGGTGTACTATTTTGGGCCATATATATGAGCTGCTTCGTCGAAAATAGGATGGTGTCGGTTGAGAGGATAAAGCAGTTTTGTAACATTCCATCAGAAGCAGCATGGAAGATAGTAGATCGCGCCCCTCCTACGAATTGGCCAGCTCATGGCAATGTTGAGCTGAAAGACTTGCAGGTCAGATATCGTCCGAATACTCCCTTGGTTCTCAAAGGCATTAGTCTGAGCATTCATGGGGGTGAGAAGGTCGGTGTTGTTGGTCGAACGGGGAGTGGGAAATCCACTTTAATTCAGGTGTTCTTTAGGCTGGTGGAACCTTCAGCGGGAAAAATTATCATCGATGGCATCGACATATGCACGATAGGGCTTCATGATCTCCGGTCTAGCTTTGGGATCATTCCTCAAGAACCTGTCCTTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATCGGGGTGTATTCAGATGAAGAGATTTGGAAGAGCTTGGAGCGCTGCCAACTTAAAGATGTTGTTGCTGCAAAACCTGAAAAACTCGATGCTTTAGTGGTCGATGATGGAGATAATTGGAGTGTGGGGCAAAGACAGCTTCTTTGTTTGGGACGAGTTATGTTAAAGCGCAGCAGGCTATTGTTCATGGATGAGGCCACGGCTTCAGTTGACTCACAGACGGATGCTGCGATACAAAAGATCATCAGAGAGGACTTTGCTGCATGTACAATCATCAGCATTGCTCACAGAATACCAACAGTGATGGACTGCAATAGAGTTTTAGTAGTAGATGCAGGTGAGTTTGATAAATCAGTGTCATGCTTGGCTTTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009624 GO:0009628 GO:0009987 GO:0010035 GO:0010118 GO:0012505 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1489

Amino Acids

166.48

Weight (kDa)

8.52

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	333 - 596	3.2e-25	ABC transporter transmembrane region
ABC_tran	PF00005	661 - 794	5.1e-21	ABC transporter
ABC_membrane	PF00664	968 - 1205	4.5e-30	ABC transporter transmembrane region
ABC_tran	PF00005	1283 - 1431	5.5e-26	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47800 AT3G62700
fragaria_vesca	FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570 FvH4_2g25570
malus_domestica	MD03G1286300.v1.1 MD11G1313300.v1.1 MD11G1313800.v1.1 MD11G1314300.v1.1
prunus_persica	Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1 Prupe.8G259800_v2.0.a1
pyrus_communis	pycom03g22680 pycom03g22690 pycom11g27270
rosa_chinensis	RchiOBHm_Chr6g0293781
rosa_laevigata	RLG00000011924
rosa_multiflora	Rmu_sc0005641.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173910
rosa_rugosa	Rorug06G0238000
rosa_samantha	Rh6AG351300 Rh6BG358200 Rh6DG352000
rosa_wichuraiana	Rw6G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	4415
AasI	GACNNNNNNGTC	1 cut(s)	3815
Acc16I	TGCGCA	1 cut(s)	2592
Acc36I	ACCTGC	3 cut(s)	1250, 3805, 4415
Acc65I	GGTACC	1 cut(s)	3300
AccB1I	GGYRCC	1 cut(s)	3300
AccB7I	CCANNNNNTGG	2 cut(s)	3507, 3788
AccII	CGCG	6 cut(s)	219, 1252, 1605, 2024, 2292, 3762
AclI	AACGTT	1 cut(s)	284
AclWI	GGATC	8 cut(s)	26, 651, 664, 2050, 2416, 2942, 4040, 4079
AcoI	YGGCCR	4 cut(s)	78, 513, 3254, 3779
AcsI	RAATTY	2 cut(s)	1773, 3129
AcuI	CTGAAG	5 cut(s)	750, 2368, 2907, 3942, 4278
AdeI	CACNNNGTG	1 cut(s)	33
AfeI	AGCGCT	1 cut(s)	4133
AfiI	CCNNNNNNNGG	7 cut(s)	221, 841, 1094, 1567, 3507, 3788, 3962
AflII	CTTAAG	1 cut(s)	2444
AgeI	ACCGGT	1 cut(s)	1854
AhlI	ACTAGT	1 cut(s)	448
AjiI	CACGTC	1 cut(s)	24
AjnI	CCWGG	4 cut(s)	1560, 2211, 2336, 2635
AjuI	GAANNNNNNNTTGG	2 cut(s)	3824, 3856
AleI	CACNNNNGTG	2 cut(s)	341, 1415
Alw21I	GWGCWC	6 cut(s)	133, 268, 1665, 1676, 2627, 3222
Alw26I	GTCTC	2 cut(s)	707, 2865
Alw44I	GTGCAC	1 cut(s)	1672
AlwI	GGATC	8 cut(s)	26, 651, 664, 2050, 2416, 2942, 4040, 4079
AlwNI	CAGNNNCTG	1 cut(s)	1421
Ama87I	CYCGRG	1 cut(s)	199
Aor51HI	AGCGCT	1 cut(s)	4133
ApaLI	GTGCAC	1 cut(s)	1672
ApoI	RAATTY	2 cut(s)	1773, 3129
ArsI	GACNNNNNNTTYG	2 cut(s)	4215, 4247
AseI	ATTAAT	1 cut(s)	780
AsiGI	ACCGGT	1 cut(s)	1854
Asp700I	GAANNNNTTC	1 cut(s)	2053
Asp718I	GGTACC	1 cut(s)	3300
AspLEI	GCGC	7 cut(s)	1252, 2292, 2593, 3364, 3764, 4134, 4260
AspS9I	GGNCC	6 cut(s)	204, 1034, 1354, 1743, 1852, 3657
AsuC2I	CCSGG	2 cut(s)	276, 3305
AsuII	TTCGAA	2 cut(s)	903, 949
AvaI	CYCGRG	1 cut(s)	199
AvaII	GGWCC	4 cut(s)	204, 1354, 1743, 1852
BaeGI	GKGCMC	1 cut(s)	1676
BaeI	ACNNNNGTAYC	2 cut(s)	3292, 3325
BalI	TGGCCA	3 cut(s)	515, 3256, 3781
BamHI	GGATCC	1 cut(s)	656
BanI	GGYRCC	1 cut(s)	3300
BanII	GRGCYC	2 cut(s)	133, 268
BauI	CACGAG	2 cut(s)	31, 3327
BbsI	GAAGAC	3 cut(s)	97, 2046, 2374
Bbv12I	GWGCWC	6 cut(s)	133, 268, 1665, 1676, 2627, 3222
BbvCI	CCTCAGC	1 cut(s)	70
BceAI	ACGGC	5 cut(s)	229, 255, 1072, 3511, 4305
BcgI	CGANNNNNNTGC	2 cut(s)	929, 963
BciT130I	CCWGG	4 cut(s)	1562, 2213, 2338, 2637
BciVI	GTATCC	2 cut(s)	1091, 2319
BclI	TGATCA	3 cut(s)	1008, 1551, 3151
BcnI	CCSGG	2 cut(s)	276, 3305
BcoDI	GTCTC	2 cut(s)	707, 2865
BcuI	ACTAGT	1 cut(s)	448
BfaI	CTAG	5 cut(s)	9, 449, 2852, 3524, 4023
BfmI	CTRYAG	2 cut(s)	1325, 1778
BfoI	RGCGCY	2 cut(s)	3365, 4135
BfrI	CTTAAG	1 cut(s)	2444
BfuAI	ACCTGC	3 cut(s)	1250, 3805, 4415
BfuI	GTATCC	2 cut(s)	1091, 2319
BglI	GCCNNNNNGGC	1 cut(s)	2132
BlpI	GCTNAGC	2 cut(s)	1302, 2561
BmcAI	AGTACT	4 cut(s)	373, 447, 2442, 2647
Bme1390I	CCNGG	6 cut(s)	276, 1562, 2213, 2338, 2637, 3305
Bme18I	GGWCC	4 cut(s)	204, 1354, 1743, 1852
BmeT110I	CYCGRG	1 cut(s)	199
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	6 cut(s)	204, 1034, 1354, 1743, 1852, 3657
BmiI	GGNNCC	7 cut(s)	658, 867, 1744, 1785, 3302, 3499, 3954
BmrFI	CCNGG	6 cut(s)	276, 1562, 2213, 2338, 2637, 3305
BmrI	ACTGGG	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	517
BpiI	GAAGAC	3 cut(s)	97, 2046, 2374
BpmI	CTGGAG	1 cut(s)	570
Bpu10I	CCTNAGC	1 cut(s)	70
Bpu1102I	GCTNAGC	2 cut(s)	1302, 2561
Bpu14I	TTCGAA	2 cut(s)	903, 949
BpuEI	CTTGAG	5 cut(s)	757, 1252, 1809, 3036, 4026
BpuMI	CCSGG	2 cut(s)	276, 3305
Bsa29I	ATCGAT	1 cut(s)	3978
BsaWI	WCCGGW	6 cut(s)	922, 943, 963, 1854, 2405, 4017
BsaXI	ACNNNNNCTCC	8 cut(s)	58, 88, 850, 880, 917, 947, 2585, 2615
Bsc4I	CCNNNNNNNGG	7 cut(s)	221, 841, 1094, 1567, 3507, 3788, 3962
Bse118I	RCCGGY	2 cut(s)	1351, 1854
Bse1I	ACTGG	9 cut(s)	512, 667, 760, 867, 917, 1156, 1426, 1881, 3285
Bse3DI	GCAATG	5 cut(s)	956, 1365, 3198, 3799, 4368
BseBI	CCWGG	4 cut(s)	1562, 2213, 2338, 2637
BseCI	ATCGAT	1 cut(s)	3978
BseLI	CCNNNNNNNGG	7 cut(s)	221, 841, 1094, 1567, 3507, 3788, 3962
BseMI	GCAATG	5 cut(s)	956, 1365, 3198, 3799, 4368
BseMII	CTCAG	9 cut(s)	84, 86, 302, 829, 1316, 2732, 3235, 3396, 3854
BseNI	ACTGG	9 cut(s)	512, 667, 760, 867, 917, 1156, 1426, 1881, 3285
BseRI	GAGGAG	2 cut(s)	941, 2786
BseSI	GKGCMC	1 cut(s)	1676
BseYI	CCCAGC	2 cut(s)	1739, 1953
BsgI	GTGCAG	1 cut(s)	1419
Bsh1236I	CGCG	6 cut(s)	219, 1252, 1605, 2024, 2292, 3762
BshNI	GGYRCC	1 cut(s)	3300
BshTI	ACCGGT	1 cut(s)	1854
BshVI	ATCGAT	1 cut(s)	3978
BsiHKAI	GWGCWC	6 cut(s)	133, 268, 1665, 1676, 2627, 3222
BsiHKCI	CYCGRG	1 cut(s)	199
BslFI	GGGAC	8 cut(s)	105, 258, 1756, 2047, 2131, 2173, 3619, 4254
BslI	CCNNNNNNNGG	7 cut(s)	221, 841, 1094, 1567, 3507, 3788, 3962
BsmAI	GTCTC	2 cut(s)	707, 2865
BsmFI	GGGAC	8 cut(s)	105, 258, 1756, 2047, 2131, 2173, 3619, 4254
BsmI	GAATGC	3 cut(s)	986, 3469, 3867
BsoBI	CYCGRG	1 cut(s)	199
Bsp119I	TTCGAA	2 cut(s)	903, 949
Bsp1286I	GDGCHC	6 cut(s)	133, 268, 1665, 1676, 2627, 3222
Bsp1407I	TGTACA	3 cut(s)	1218, 1383, 4355
Bsp1720I	GCTNAGC	2 cut(s)	1302, 2561
Bsp19I	CCATGG	2 cut(s)	383, 2604
Bsp68I	TCGCGA	1 cut(s)	1605
BspCNI	CTCAG	9 cut(s)	83, 87, 303, 828, 1315, 2731, 3234, 3395, 3855
BspDI	ATCGAT	1 cut(s)	3978
BspFNI	CGCG	6 cut(s)	219, 1252, 1605, 2024, 2292, 3762
BspHI	TCATGA	3 cut(s)	2514, 3567, 4009
BspLI	GGNNCC	7 cut(s)	658, 867, 1744, 1785, 3302, 3499, 3954
BspMAI	CTGCAG	2 cut(s)	1329, 1782
BspMI	ACCTGC	3 cut(s)	1250, 3805, 4415
BspPI	GGATC	8 cut(s)	26, 651, 664, 2050, 2416, 2942, 4040, 4079
BspQI	GCTCTTC	1 cut(s)	4115
BspT104I	TTCGAA	2 cut(s)	903, 949
BspT107I	GGYRCC	1 cut(s)	3300
BspTI	CTTAAG	1 cut(s)	2444
BsrDI	GCAATG	5 cut(s)	956, 1365, 3198, 3799, 4368
BsrFI	RCCGGY	2 cut(s)	1351, 1854
BsrGI	TGTACA	3 cut(s)	1218, 1383, 4355
BsrI	ACTGG	9 cut(s)	512, 667, 760, 867, 917, 1156, 1426, 1881, 3285
BssAI	RCCGGY	2 cut(s)	1351, 1854
BssSI	CACGAG	2 cut(s)	31, 3327
BssT1I	CCWWGG	5 cut(s)	383, 2074, 2604, 3441, 3840
Bst2BI	CACGAG	2 cut(s)	31, 3327
Bst2UI	CCWGG	4 cut(s)	1562, 2213, 2338, 2637
Bst6I	CTCTTC	5 cut(s)	1968, 2686, 2763, 4104, 4115
BstAFI	CTTAAG	1 cut(s)	2444
BstAUI	TGTACA	3 cut(s)	1218, 1383, 4355
BstBI	TTCGAA	2 cut(s)	903, 949
BstDSI	CCRYGG	4 cut(s)	217, 383, 2604, 4287
BstFNI	CGCG	6 cut(s)	219, 1252, 1605, 2024, 2292, 3762
BstH2I	RGCGCY	2 cut(s)	3365, 4135
BstHHI	GCGC	7 cut(s)	1252, 2292, 2593, 3364, 3764, 4134, 4260
BstMAI	GTCTC	2 cut(s)	707, 2865
BstNI	CCWGG	4 cut(s)	1562, 2213, 2338, 2637
BstNSI	RCATGY	2 cut(s)	1189, 4356
BstSCI	CCNGG	6 cut(s)	274, 1560, 2211, 2336, 2635, 3303
BstSFI	CTRYAG	2 cut(s)	1325, 1778
BstSLI	GKGCMC	1 cut(s)	1676
BstUI	CGCG	6 cut(s)	219, 1252, 1605, 2024, 2292, 3762
BstV2I	GAAGAC	3 cut(s)	97, 2046, 2374
BstX2I	RGATCY	2 cut(s)	656, 2042
BstXI	CCANNNNNNTGG	1 cut(s)	3285
BstYI	RGATCY	2 cut(s)	656, 2042
Bsu15I	ATCGAT	1 cut(s)	3978
BsuI	GTATCC	2 cut(s)	1091, 2319
BsuTUI	ATCGAT	1 cut(s)	3978
BtgI	CCRYGG	4 cut(s)	217, 383, 2604, 4287
BtgZI	GCGATG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	24
BtsI	GCAGTG	2 cut(s)	1422, 1707
BtsIMutI	CAGTG	9 cut(s)	660, 860, 1422, 1707, 2392, 3213, 3278, 4395, 4449
BtuMI	TCGCGA	1 cut(s)	1605
BveI	ACCTGC	3 cut(s)	1250, 3805, 4415
CaiI	CAGNNNCTG	1 cut(s)	1421
CciI	TCATGA	3 cut(s)	2514, 3567, 4009
CfoI	GCGC	7 cut(s)	1252, 2292, 2593, 3364, 3764, 4134, 4260
Cfr10I	RCCGGY	2 cut(s)	1351, 1854
Cfr13I	GGNCC	6 cut(s)	204, 1034, 1354, 1743, 1852, 3657
Cfr42I	CCGCGG	1 cut(s)	220
ClaI	ATCGAT	1 cut(s)	3978
CspAI	ACCGGT	1 cut(s)	1854
CspCI	CAANNNNNGTGG	2 cut(s)	2287, 2322
DraIII	CACNNNGTG	1 cut(s)	33
DrdI	GACNNNNNNGTC	1 cut(s)	3815
DseDI	GACNNNNNNGTC	1 cut(s)	3815
EaeI	YGGCCR	4 cut(s)	78, 513, 3254, 3779
Eam1104I	CTCTTC	5 cut(s)	1968, 2686, 2763, 4104, 4115
EarI	CTCTTC	5 cut(s)	1968, 2686, 2763, 4104, 4115
Ecl136II	GAGCTC	2 cut(s)	131, 266
Eco130I	CCWWGG	5 cut(s)	383, 2074, 2604, 3441, 3840
Eco24I	GRGCYC	2 cut(s)	133, 268
Eco32I	GATATC	2 cut(s)	2667, 3824
Eco47I	GGWCC	4 cut(s)	204, 1354, 1743, 1852
Eco47III	AGCGCT	1 cut(s)	4133
Eco53kI	GAGCTC	2 cut(s)	131, 266
Eco57I	CTGAAG	5 cut(s)	750, 2368, 2907, 3942, 4278
Eco88I	CYCGRG	1 cut(s)	199
EcoICRI	GAGCTC	2 cut(s)	131, 266
EcoO109I	RGGNCCY	1 cut(s)	1034
EcoRII	CCWGG	4 cut(s)	1560, 2211, 2336, 2635
EcoRV	GATATC	2 cut(s)	2667, 3824
EcoT14I	CCWWGG	5 cut(s)	383, 2074, 2604, 3441, 3840
EcoT38I	GRGCYC	2 cut(s)	133, 268
ErhI	CCWWGG	5 cut(s)	383, 2074, 2604, 3441, 3840
FalI	AAGNNNNNCTT	2 cut(s)	1214, 1246
FaqI	GGGAC	8 cut(s)	105, 258, 1756, 2047, 2131, 2173, 3619, 4254
FauI	CCCGC	5 cut(s)	224, 495, 2108, 2427, 3955
FauNDI	CATATG	1 cut(s)	3992
FbaI	TGATCA	3 cut(s)	1008, 1551, 3151
FriOI	GRGCYC	2 cut(s)	133, 268
FspBI	CTAG	5 cut(s)	9, 449, 2852, 3524, 4023
FspI	TGCGCA	1 cut(s)	2592
GlaI	GCGC	7 cut(s)	1251, 2291, 2592, 3363, 3763, 4133, 4259
GsaI	CCCAGC	2 cut(s)	1743, 1957
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	2 cut(s)	3365, 4135
HhaI	GCGC	7 cut(s)	1252, 2292, 2593, 3364, 3764, 4134, 4260
Hin6I	GCGC	7 cut(s)	1250, 2290, 2591, 3362, 3762, 4132, 4258
HinP1I	GCGC	7 cut(s)	1250, 2290, 2591, 3362, 3762, 4132, 4258
HincII	GTYRAC	3 cut(s)	2005, 2482, 4300
HindII	GTYRAC	3 cut(s)	2005, 2482, 4300
Hpy99I	CGWCG	2 cut(s)	3239, 3683
HpyCH4IV	ACGT	3 cut(s)	23, 284, 852
HpySE526I	ACGT	3 cut(s)	23, 284, 852
HspAI	GCGC	7 cut(s)	1250, 2290, 2591, 3362, 3762, 4132, 4258
KpnI	GGTACC	1 cut(s)	3304
Ksp22I	TGATCA	3 cut(s)	1008, 1551, 3151
KspI	CCGCGG	1 cut(s)	220
LguI	GCTCTTC	1 cut(s)	4115
LmnI	GCTCC	9 cut(s)	79, 871, 966, 1783, 2606, 2608, 3503, 3537, 4129
MaeI	CTAG	5 cut(s)	9, 449, 2852, 3524, 4023
MaeII	ACGT	3 cut(s)	23, 284, 852
MaeIII	GTNAC	9 cut(s)	332, 424, 751, 1417, 2357, 2467, 3025, 3308, 3722
MfeI	CAATTG	2 cut(s)	2163, 3030
MflI	RGATCY	2 cut(s)	656, 2042
MhlI	GDGCHC	6 cut(s)	133, 268, 1665, 1676, 2627, 3222
MlsI	TGGCCA	3 cut(s)	515, 3256, 3781
MluNI	TGGCCA	3 cut(s)	515, 3256, 3781
MlyI	GAGTC	4 cut(s)	301, 429, 1616, 4295
MmeI	TCCRAC	4 cut(s)	881, 933, 1249, 1830
Mox20I	TGGCCA	3 cut(s)	515, 3256, 3781
MroXI	GAANNNNTTC	1 cut(s)	2053
MscI	TGGCCA	3 cut(s)	515, 3256, 3781
Msp20I	TGGCCA	3 cut(s)	515, 3256, 3781
MspA1I	CMGCKG	4 cut(s)	219, 2722, 2987, 3962
MspCI	CTTAAG	1 cut(s)	2444
MspR9I	CCNGG	6 cut(s)	276, 1562, 2213, 2338, 2637, 3305
MunI	CAATTG	2 cut(s)	2163, 3030
Mva1269I	GAATGC	3 cut(s)	986, 3469, 3867
MvaI	CCWGG	4 cut(s)	1562, 2213, 2338, 2637
MvnI	CGCG	6 cut(s)	219, 1252, 1605, 2024, 2292, 3762
NciI	CCSGG	2 cut(s)	276, 3305
NcoI	CCATGG	2 cut(s)	383, 2604
NdeI	CATATG	1 cut(s)	3992
NlaIV	GGNNCC	7 cut(s)	658, 867, 1744, 1785, 3302, 3499, 3954
NmeAIII	GCCGAG	3 cut(s)	1226, 1628, 2650
NmuCI	GTSAC	4 cut(s)	751, 1417, 2357, 3025
NruI	TCGCGA	1 cut(s)	1605
NsbI	TGCGCA	1 cut(s)	2592
NspI	RCATGY	2 cut(s)	1189, 4356
NspV	TTCGAA	2 cut(s)	903, 949
OliI	CACNNNNGTG	2 cut(s)	341, 1415
PaeI	GCATGC	1 cut(s)	1189
PaeR7I	CTCGAG	1 cut(s)	199
PagI	TCATGA	3 cut(s)	2514, 3567, 4009
PaqCI	CACCTGC	1 cut(s)	4415
PciSI	GCTCTTC	1 cut(s)	4115
PcsI	WCGNNNNNNNCGW	4 cut(s)	29, 38, 3984, 4316
PctI	GAATGC	3 cut(s)	986, 3469, 3867
PdmI	GAANNNNTTC	1 cut(s)	2053
PflMI	CCANNNNNTGG	2 cut(s)	3507, 3788
PfoI	TCCNGGA	1 cut(s)	274
PinAI	ACCGGT	1 cut(s)	1854
PleI	GAGTC	4 cut(s)	301, 429, 1615, 4295
PpsI	GAGTC	4 cut(s)	301, 429, 1615, 4295
PshBI	ATTAAT	1 cut(s)	780
Psp124BI	GAGCTC	2 cut(s)	133, 268
Psp1406I	AACGTT	1 cut(s)	284
Psp6I	CCWGG	4 cut(s)	1560, 2211, 2336, 2635
PspFI	CCCAGC	2 cut(s)	1739, 1953
PspGI	CCWGG	4 cut(s)	1560, 2211, 2336, 2635
PspN4I	GGNNCC	7 cut(s)	658, 867, 1744, 1785, 3302, 3499, 3954
PspPI	GGNCC	6 cut(s)	204, 1034, 1354, 1743, 1852, 3657
PspXI	VCTCGAGB	1 cut(s)	199
PstI	CTGCAG	2 cut(s)	1329, 1782
PstNI	CAGNNNCTG	1 cut(s)	1421
PsuI	RGATCY	2 cut(s)	656, 2042
PvuII	CAGCTG	2 cut(s)	2722, 2987
RruI	TCGCGA	1 cut(s)	1605
SacI	GAGCTC	2 cut(s)	133, 268
SacII	CCGCGG	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	4115
Sau96I	GGNCC	6 cut(s)	204, 1034, 1354, 1743, 1852, 3657
ScaI	AGTACT	4 cut(s)	373, 447, 2442, 2647
SchI	GAGTC	4 cut(s)	301, 429, 1616, 4295
ScrFI	CCNGG	6 cut(s)	276, 1562, 2213, 2338, 2637, 3305
SduI	GDGCHC	6 cut(s)	133, 268, 1665, 1676, 2627, 3222
SfcI	CTRYAG	2 cut(s)	1325, 1778
Sfr274I	CTCGAG	1 cut(s)	199
Sfr303I	CCGCGG	1 cut(s)	220
SfuI	TTCGAA	2 cut(s)	903, 949
SgrBI	CCGCGG	1 cut(s)	220
SinI	GGWCC	4 cut(s)	204, 1354, 1743, 1852
SlaI	CTCGAG	1 cut(s)	199
SmlI	CTYRAG	7 cut(s)	199, 736, 1231, 1824, 2444, 3051, 4041
SmoI	CTYRAG	7 cut(s)	199, 736, 1231, 1824, 2444, 3051, 4041
SpeI	ACTAGT	1 cut(s)	448
SphI	GCATGC	1 cut(s)	1189
SspI	AATATT	2 cut(s)	2418, 3607
SspMI	CTAG	5 cut(s)	9, 449, 2852, 3524, 4023
SstI	GAGCTC	2 cut(s)	133, 268
StyD4I	CCNGG	6 cut(s)	274, 1560, 2211, 2336, 2635, 3303
StyI	CCWWGG	5 cut(s)	383, 2074, 2604, 3441, 3840
TaiI	ACGT	3 cut(s)	26, 287, 855
TauI	GCSGC	3 cut(s)	222, 225, 2295
TscAI	CASTG	9 cut(s)	667, 867, 1422, 1714, 2392, 3220, 3285, 4395, 4449
TseFI	GTSAC	4 cut(s)	751, 1417, 2357, 3025
Tsp45I	GTSAC	4 cut(s)	751, 1417, 2357, 3025
TspGWI	ACGGA	4 cut(s)	34, 2760, 3509, 4325
TspRI	CASTG	9 cut(s)	667, 867, 1422, 1714, 2392, 3220, 3285, 4395, 4449
Van91I	CCANNNNNTGG	2 cut(s)	3507, 3788
Vha464I	CTTAAG	1 cut(s)	2444
VneI	GTGCAC	1 cut(s)	1672
VpaK11BI	GGWCC	4 cut(s)	204, 1354, 1743, 1852
VspI	ATTAAT	1 cut(s)	780
XapI	RAATTY	2 cut(s)	1773, 3129
XbaI	TCTAGA	1 cut(s)	3523
XceI	RCATGY	2 cut(s)	1189, 4356
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3475, 3508
XhoI	CTCGAG	1 cut(s)	199
XmnI	GAANNNNTTC	1 cut(s)	2053
XspI	CTAG	5 cut(s)	9, 449, 2852, 3524, 4023
ZrmI	AGTACT	4 cut(s)	373, 447, 2442, 2647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.