MD12G1045000.v1.1

Ring finger domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
5014383 .. 5019919
5537 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1045000.v1.1.491

Sequence Viewer

Length: 1164 bp
ATGGAGATTCCAGATAAAATGGAGGCAGAGGCTGAAAGTCATATGATATCAGCTGCTGCATTTGTGGAAGGGGGAATACAAGAGGCTTATGGCGAGGCCTGCAGCATATGCCTTGAGGAGTTTTGTGATGGTGATCCTTCAGTGGTTACTTGTTGCAAGCATGAGTTTCACCTCCACTGCATCCTTGAGTGGTGCCAACGAAGCTCTCAATGTCCCATGTGTTGGCAACCCATTAGCTTGAAGGATCCTTGCAGCCAAGAATTACTGGAGGGAGTAGAAAGGGAGAGAAGAATTAGAGAGACCGCAAGAAATGCACCCATATTTCATCATCCCACCCTTGGCGATTTTCAATTTCAGCATTTACCTGTGGGTACTACCAATGCTGAACTTGAAGAGCGCATAATTCAGCACTTGGCTGCTGCTGCTTCTATGGGAAGGGCCCACCACCATGGTAGAAGGGAAGGCCATAGGAGCCGATTATCTGCTCGTGGTCATCCACACATCTCAGTACCTTCTACTCATTCTAGGTCATCTCCTCTTGGTCCTGTTCATGCCCCTGGAGGAGACACTGAACCAGCTGAAATAACTGTAGCAAGTCCATCTACCCCACTTACATCAGATGGAGACGAAACATCACGAATGAGCGCACAATATCCTTCTGTTCATACGGATGGAAATTCTTCCTCGCCATCTGGGTCTTCACGCATGCATAGAAATCGTCAAGGAAATTCCTCTAGCAATTTCTCTACTAGCCATGCCTCCTCTTTGAATCAGGACAGAGCAGGACCATCAGAACTTCACTCTCTTTCAGAGTCTCTGAAATCTAAGTTTAATTCTATGTCAATGAGGTACAAGGAATCGTTTTCGAGGAATACACGAGGATTGAAGGAGAGGCTGTTCTCTCGTAGCACTTCTATGTCGGAACTTAGTTCTGAAGTCCGTAGAGAGGTTAATGCTGGAATTGCCACCGTATCTCGAATGATGGAGCGCCTTGAGACAAGAGATAATAGTCCAGACAACCAGTCTTCTGGAGTGAATCAGACTGCGGATGGTTCTGCTGCAGAGCAGGGCAACCAGAACCGTGCAGAGATTCATGGAGAAAACCCTTTGAGTGACAACAATAGGCCTGGTACTACATGTGCCGCGGGTTCTGCTTCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

388

Amino Acids

42.24

Weight (kDa)

6.05

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 29 - 74 1.4e-07 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 30 - 81 1.7e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2 PF13639 33 - 74 7.2e-09 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 222
AccII CGCG 1 cut(s) 1145
AciI CCGC 4 cut(s) 303, 1046, 1143, 1145
AclWI GGATC 3 cut(s) 128, 239, 252
AcsI RAATTY 2 cut(s) 676, 727
AcuI CTGAAG 2 cut(s) 123, 954
AfaI GTAC 4 cut(s) 373, 510, 851, 1132
AfiI CCNNNNNNNGG 3 cut(s) 222, 338, 946
AflIII ACRYGT 1 cut(s) 1136
AgsI TTSAA 5 cut(s) 241, 350, 392, 769, 886
AhdI GACNNNNNGTC 1 cut(s) 1021
AjnI CCWGG 2 cut(s) 556, 1126
AloI GAACNNNNNNTCC 2 cut(s) 881, 913
AluBI AGCT 4 cut(s) 53, 204, 237, 578
AluI AGCT 4 cut(s) 53, 204, 237, 578
Alw26I GTCTC 5 cut(s) 293, 558, 618, 819, 989
AlwI GGATC 3 cut(s) 128, 239, 252
AlwNI CAGNNNCTG 2 cut(s) 32, 56
AoxI GGCC 4 cut(s) 96, 438, 463, 1124
ApaI GGGCCC 1 cut(s) 442
ApeKI GCWGC 8 cut(s) 53, 56, 102, 252, 416, 419, 422, 1058
ApoI RAATTY 2 cut(s) 676, 727
Asp700I GAANNNNTTC 1 cut(s) 679
AspLEI GCGC 3 cut(s) 399, 647, 990
AspS9I GGNCC 4 cut(s) 438, 439, 542, 785
AsuHPI GGTGA 2 cut(s) 143, 161
AvaII GGWCC 2 cut(s) 542, 785
BaeGI GKGCMC 1 cut(s) 442
BamHI GGATCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 442
BarI GAAGNNNNNNTAC 2 cut(s) 60, 92
BauI CACGAG 2 cut(s) 486, 876
BbsI GAAGAC 2 cut(s) 690, 1017
BbvI GCAGC 8 cut(s) 40, 43, 114, 264, 403, 406, 409, 1045
BccI CCATC 8 cut(s) 122, 607, 614, 665, 697, 796, 976, 1043
BcgI CGANNNNNNTGC 2 cut(s) 698, 732
BciT130I CCWGG 2 cut(s) 558, 1128
BcoDI GTCTC 5 cut(s) 293, 558, 618, 819, 989
BfaI CTAG 3 cut(s) 525, 735, 750
BfmI CTRYAG 3 cut(s) 100, 588, 1059
BfoI RGCGCY 1 cut(s) 991
BisI GCNGC 9 cut(s) 54, 57, 103, 253, 417, 420, 423, 1059, 1143
BlsI GCNGC 9 cut(s) 55, 58, 104, 254, 418, 421, 424, 1060, 1144
Bme1390I CCNGG 2 cut(s) 558, 1128
Bme18I GGWCC 2 cut(s) 542, 785
BmeRI GACNNNNNGTC 1 cut(s) 1021
BmgT120I GGNCC 4 cut(s) 438, 439, 542, 785
BmiI GGNNCC 4 cut(s) 194, 246, 440, 473
BmrFI CCNGG 2 cut(s) 558, 1128
BmsI GCATC 1 cut(s) 189
BpiI GAAGAC 2 cut(s) 690, 1017
BpmI CTGGAG 3 cut(s) 287, 579, 1050
BpuEI CTTGAG 3 cut(s) 134, 206, 1013
BsaBI GATNNNNATC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 4 cut(s) 337, 448, 556, 1143
BsaXI ACNNNNNCTCC 2 cut(s) 881, 911
Bsc4I CCNNNNNNNGG 3 cut(s) 222, 338, 946
Bse1I ACTGG 2 cut(s) 270, 1021
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 2 cut(s) 558, 1128
BseDI CCNNGG 4 cut(s) 337, 448, 556, 1143
BseGI GGATG 5 cut(s) 180, 328, 493, 676, 1054
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 3 cut(s) 222, 338, 946
BseMII CTCAG 1 cut(s) 519
BseNI ACTGG 2 cut(s) 270, 1021
BseRI GAGGAG 4 cut(s) 131, 525, 576, 751
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 8 cut(s) 40, 43, 114, 264, 403, 406, 409, 1045
BsgI GTGCAG 1 cut(s) 1104
Bsh1236I CGCG 1 cut(s) 1145
BshFI GGCC 4 cut(s) 98, 440, 465, 1126
BshNI GGYRCC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 3 cut(s) 222, 338, 946
BsmAI GTCTC 5 cut(s) 293, 558, 618, 819, 989
BsmBI CGTCTC 1 cut(s) 618
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 4 cut(s) 98, 440, 465, 1126
Bso31I GGTCTC 1 cut(s) 293
Bsp120I GGGCCC 1 cut(s) 438
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 2 cut(s) 133, 244
Bsp19I CCATGG 1 cut(s) 448
BspACI CCGC 4 cut(s) 303, 1046, 1143, 1145
BspANI GGCC 4 cut(s) 98, 440, 465, 1126
BspCNI CTCAG 1 cut(s) 518
BspFNI CGCG 1 cut(s) 1145
BspLI GGNNCC 4 cut(s) 194, 246, 440, 473
BspMAI CTGCAG 2 cut(s) 104, 1063
BspPI GGATC 3 cut(s) 128, 239, 252
BspQI GCTCTTC 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 293
BsrI ACTGG 2 cut(s) 270, 1021
BssECI CCNNGG 4 cut(s) 337, 448, 556, 1143
BssMI GATC 2 cut(s) 133, 244
BssSI CACGAG 2 cut(s) 486, 876
BssT1I CCWWGG 2 cut(s) 337, 448
Bst2BI CACGAG 2 cut(s) 486, 876
Bst2UI CCWGG 2 cut(s) 558, 1128
Bst4CI ACNGT 3 cut(s) 589, 970, 1082
Bst6I CTCTTC 1 cut(s) 387
BstAPI GCANNNNNTGC 2 cut(s) 108, 311
BstC8I GCNNGC 3 cut(s) 100, 158, 707
BstDEI CTNAG 3 cut(s) 505, 825, 926
BstDSI CCRYGG 2 cut(s) 448, 1143
BstF5I GGATG 5 cut(s) 180, 328, 493, 676, 1054
BstFNI CGCG 1 cut(s) 1145
BstH2I RGCGCY 1 cut(s) 991
BstHHI GCGC 3 cut(s) 399, 647, 990
BstKTI GATC 2 cut(s) 136, 247
BstMAI GTCTC 5 cut(s) 293, 558, 618, 819, 989
BstMBI GATC 2 cut(s) 133, 244
BstMWI GCNNNNNNNGC 8 cut(s) 99, 108, 201, 311, 422, 471, 962, 1151
BstNI CCWGG 2 cut(s) 558, 1128
BstNSI RCATGY 2 cut(s) 709, 1140
BstSCI CCNGG 2 cut(s) 556, 1126
BstSFI CTRYAG 3 cut(s) 100, 588, 1059
BstSLI GKGCMC 1 cut(s) 442
BstUI CGCG 1 cut(s) 1145
BstV1I GCAGC 8 cut(s) 40, 43, 114, 264, 403, 406, 409, 1045
BstV2I GAAGAC 2 cut(s) 690, 1017
BstX2I RGATCY 1 cut(s) 244
BstXI CCANNNNNNTGG 2 cut(s) 449, 1028
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 4 cut(s) 98, 440, 465, 1126
BtgI CCRYGG 2 cut(s) 448, 1143
BtsCI GGATG 5 cut(s) 180, 328, 493, 676, 1054
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 3 cut(s) 147, 175, 567
Cac8I GCNNGC 3 cut(s) 100, 158, 707
CaiI CAGNNNCTG 2 cut(s) 32, 56
CfoI GCGC 3 cut(s) 399, 647, 990
Cfr13I GGNCC 4 cut(s) 438, 439, 542, 785
Cfr42I CCGCGG 1 cut(s) 1146
Csp6I GTAC 4 cut(s) 372, 509, 850, 1131
CviAII CATG 8 cut(s) 161, 217, 449, 551, 706, 755, 1094, 1137
CviQI GTAC 4 cut(s) 372, 509, 850, 1131
DdeI CTNAG 3 cut(s) 505, 825, 926
DpnI GATC 2 cut(s) 135, 246
DpnII GATC 2 cut(s) 133, 244
DriI GACNNNNNGTC 1 cut(s) 1021
Eam1104I CTCTTC 1 cut(s) 387
Eam1105I GACNNNNNGTC 1 cut(s) 1021
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 2 cut(s) 337, 448
Eco147I AGGCCT 2 cut(s) 98, 1126
Eco24I GRGCYC 1 cut(s) 442
Eco31I GGTCTC 1 cut(s) 293
Eco32I GATATC 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 542, 785
Eco57I CTGAAG 2 cut(s) 123, 954
EcoO109I RGGNCCY 1 cut(s) 438
EcoRII CCWGG 2 cut(s) 556, 1126
EcoRV GATATC 1 cut(s) 48
EcoT14I CCWWGG 2 cut(s) 337, 448
EcoT22I ATGCAT 1 cut(s) 711
EcoT38I GRGCYC 1 cut(s) 442
ErhI CCWWGG 2 cut(s) 337, 448
Esp3I CGTCTC 1 cut(s) 618
FaeI CATG 8 cut(s) 164, 220, 452, 554, 709, 758, 1097, 1140
FaqI GGGAC 1 cut(s) 198
FatI CATG 8 cut(s) 160, 216, 448, 550, 705, 754, 1093, 1136
FauI CCCGC 1 cut(s) 1138
FauNDI CATATG 2 cut(s) 42, 107
Fnu4HI GCNGC 9 cut(s) 54, 57, 103, 253, 417, 420, 423, 1059, 1143
FokI GGATG 5 cut(s) 167, 315, 480, 683, 1061
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 9 cut(s) 54, 57, 103, 253, 417, 420, 423, 1059, 1143
FspBI CTAG 3 cut(s) 525, 735, 750
GlaI GCGC 3 cut(s) 398, 646, 989
GluI GCNGC 9 cut(s) 54, 57, 103, 253, 417, 420, 423, 1059, 1143
GsuI CTGGAG 3 cut(s) 287, 579, 1050
HaeII RGCGCY 1 cut(s) 991
HaeIII GGCC 4 cut(s) 98, 440, 465, 1126
HhaI GCGC 3 cut(s) 399, 647, 990
Hin1II CATG 8 cut(s) 164, 220, 452, 554, 709, 758, 1097, 1140
Hin6I GCGC 3 cut(s) 397, 645, 988
HinP1I GCGC 3 cut(s) 397, 645, 988
HinfI GANTC 6 cut(s) 7, 769, 812, 857, 1036, 1090
HphI GGTGA 2 cut(s) 143, 161
Hpy188I TCNGA 7 cut(s) 619, 793, 811, 819, 922, 934, 1041
Hpy188III TCNNGA 6 cut(s) 11, 636, 773, 975, 1013, 1029
HpyAV CCTTC 9 cut(s) 62, 147, 235, 429, 450, 455, 522, 666, 880
HpyCH4III ACNGT 3 cut(s) 589, 970, 1082
HpyCH4V TGCA 9 cut(s) 59, 102, 156, 180, 252, 314, 709, 1061, 1085
HpyF10VI GCNNNNNNNGC 8 cut(s) 99, 108, 201, 311, 422, 471, 962, 1151
HpyF3I CTNAG 3 cut(s) 505, 825, 926
Hsp92II CATG 8 cut(s) 164, 220, 452, 554, 709, 758, 1097, 1140
HspAI GCGC 3 cut(s) 397, 645, 988
KspI CCGCGG 1 cut(s) 1146
Kzo9I GATC 2 cut(s) 133, 244
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 2 cut(s) 471, 985
Lsp1109I GCAGC 8 cut(s) 40, 43, 114, 264, 403, 406, 409, 1045
LweI GCATC 1 cut(s) 189
MaeI CTAG 3 cut(s) 525, 735, 750
MaeIII GTNAC 2 cut(s) 145, 1112
MalI GATC 2 cut(s) 135, 246
MboI GATC 2 cut(s) 133, 244
MboII GAAGA 5 cut(s) 300, 404, 672, 690, 1017
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 9 cut(s) 260, 291, 350, 402, 676, 727, 739, 832, 960
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 1 cut(s) 900
Mph1103I ATGCAT 1 cut(s) 711
MroXI GAANNNNTTC 1 cut(s) 679
MseI TTAA 2 cut(s) 831, 951
MslI CAYNNNNRTG 3 cut(s) 447, 669, 914
MspA1I CMGCKG 3 cut(s) 53, 578, 1145
MspR9I CCNGG 2 cut(s) 558, 1128
MvaI CCWGG 2 cut(s) 558, 1128
MvnI CGCG 1 cut(s) 1145
MwoI GCNNNNNNNGC 8 cut(s) 99, 108, 201, 311, 422, 471, 962, 1151
NcoI CCATGG 1 cut(s) 448
NdeI CATATG 2 cut(s) 42, 107
NdeII GATC 2 cut(s) 133, 244
NlaIII CATG 8 cut(s) 164, 220, 452, 554, 709, 758, 1097, 1140
NlaIV GGNNCC 4 cut(s) 194, 246, 440, 473
NmuCI GTSAC 1 cut(s) 1112
NsiI ATGCAT 1 cut(s) 711
NspI RCATGY 2 cut(s) 709, 1140
PaeI GCATGC 1 cut(s) 709
PceI AGGCCT 2 cut(s) 98, 1126
PciI ACATGT 1 cut(s) 1136
PciSI GCTCTTC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 679
PfeI GAWTC 5 cut(s) 7, 769, 857, 1036, 1090
PflMI CCANNNNNTGG 1 cut(s) 222
PkrI GCNGC 9 cut(s) 55, 58, 104, 254, 418, 421, 424, 1060, 1144
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
PscI ACATGT 1 cut(s) 1136
Psp6I CCWGG 2 cut(s) 556, 1126
PspGI CCWGG 2 cut(s) 556, 1126
PspN4I GGNNCC 4 cut(s) 194, 246, 440, 473
PspOMI GGGCCC 1 cut(s) 438
PspPI GGNCC 4 cut(s) 438, 439, 542, 785
PstI CTGCAG 2 cut(s) 104, 1063
PstNI CAGNNNCTG 2 cut(s) 32, 56
PsuI RGATCY 1 cut(s) 244
PvuII CAGCTG 2 cut(s) 53, 578
RsaI GTAC 4 cut(s) 373, 510, 851, 1132
RsaNI GTAC 4 cut(s) 372, 509, 850, 1131
RseI CAYNNNNRTG 3 cut(s) 447, 669, 914
SacII CCGCGG 1 cut(s) 1146
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 2 cut(s) 831, 951
SatI GCNGC 9 cut(s) 54, 57, 103, 253, 417, 420, 423, 1059, 1143
Sau3AI GATC 2 cut(s) 133, 244
Sau96I GGNCC 4 cut(s) 438, 439, 542, 785
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 2 cut(s) 558, 1128
SduI GDGCHC 1 cut(s) 442
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 3 cut(s) 100, 588, 1059
Sfr303I CCGCGG 1 cut(s) 1146
SgrBI CCGCGG 1 cut(s) 1146
SinI GGWCC 2 cut(s) 542, 785
SmiMI CAYNNNNRTG 3 cut(s) 447, 669, 914
SmlI CTYRAG 3 cut(s) 113, 185, 992
SmoI CTYRAG 3 cut(s) 113, 185, 992
SphI GCATGC 1 cut(s) 709
Sse9I AATT 9 cut(s) 260, 291, 350, 402, 676, 727, 739, 832, 960
SseBI AGGCCT 2 cut(s) 98, 1126
SsiI CCGC 4 cut(s) 303, 1046, 1143, 1145
SspMI CTAG 3 cut(s) 525, 735, 750
StuI AGGCCT 2 cut(s) 98, 1126
StyD4I CCNGG 2 cut(s) 556, 1126
StyI CCWWGG 2 cut(s) 337, 448
TaaI ACNGT 3 cut(s) 589, 970, 1082
TaqI TCGA 2 cut(s) 866, 976
TasI AATT 9 cut(s) 260, 291, 350, 402, 676, 727, 739, 832, 960
TauI GCSGC 1 cut(s) 1145
TfiI GAWTC 5 cut(s) 7, 769, 857, 1036, 1090
Tru1I TTAA 2 cut(s) 831, 951
Tru9I TTAA 2 cut(s) 831, 951
TscAI CASTG 3 cut(s) 147, 182, 574
TseFI GTSAC 1 cut(s) 1112
TseI GCWGC 8 cut(s) 53, 56, 102, 252, 416, 419, 422, 1058
Tsp45I GTSAC 1 cut(s) 1112
TspDTI ATGAA 4 cut(s) 314, 539, 653, 1082
TspGWI ACGGA 2 cut(s) 683, 929
TspRI CASTG 3 cut(s) 147, 182, 574
Van91I CCANNNNNTGG 1 cut(s) 222
VpaK11BI GGWCC 2 cut(s) 542, 785
XapI RAATTY 2 cut(s) 676, 727
XceI RCATGY 2 cut(s) 709, 1140
XmnI GAANNNNTTC 1 cut(s) 679
XspI CTAG 3 cut(s) 525, 735, 750
Zsp2I ATGCAT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.