pycom12g03880

Ring finger domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
3733955 .. 3736682
2728 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g03880.8

Sequence Viewer

Length: 1182 bp
ATGCGACTTTTCACAAACCATATTCCAGATAAAATGGAGGCAGAGGCTGAAAGTCATATGATATCAGCTGCTGCATTTGTGGAAGGGGGAATACAAGAGGCTTATGGCGAGGCCTGCAGCATATGCCTTGAGGAGTTTTGTGATGGTGATCCTTCAGTGGTTACTTGTTGCAAGCATGAGTTTCACCTCCACTGCATCCTTGAGTGGTGCCAGCGAAGCTCTCAATGTCCCATGTGTTGGCAACCCATTAGCTTGAAGGATCCTTGCAGCCAAGAATTACTGGAGGGAGTAGAAAGGGAGAGAAGATTTAGGGAGACAGCAAGAAATGCACCCATATTTCATCATCCCACCCTTGGCGATTTTCAATTTCAGCATTTACCTGTGGGTACTACCAATGCTGAACTTGAAGAGCGCATAATTCAGCACTTGGCTGCTGCTGCTTCTATGGGAAGGGCCCACCACCATGGTAGAAGGGAAGGCCATAGGAGCCGATCATCTGCTCGTGGTCATCCACACATCTCAGTACCTTCTACTCATTCTAGGTCATCTCCTCTTGGTCCTGTTCATGCCCCCGGAGGAGACAGTGAACCAGCTGAAATAACTGTAGCAAGTCCATCTACCCCACTTACATCAGATGGAGACGAAACATCACGAATGAGCACAACATATCCTTCTGTTCAGACAGATGGAATTTCTTCCTTGCCATCTGGGTCTTCAAGCATGCATAGAAATCGTCAAGGAAATTCCTCTAGCAATTTGAGCTCTACTAGCCATGCCTCCTCGTTGAATCAGGACAGAGCAGGACCATCAGAACTTCACTCTCTTTCAGAGTCTCTGAAATCTAAGTTTAATTCTATGTCAATGAGGTACAAGGAATCGTTTTCGAGGAGTACACGAGGATTGAAGGAGAGGCTGTTCTCTCGTAGCACTTCTATGTCGGAACTCAGTTCTGAAGTCCGTAGAGAGGTTAATGCTGGAATTGCCACCGTATCTCGAATGATGGAGCGCCTTGAGACAAGAGATAATAGTACGGACAACCAGTCTTCTGGAGTGAATCAGACTGCAGATGATTCTGCTGCAGAGCAGAACAACCAGAACCGTGCAGGGATTCGTGGAGAAAACCCTTTGAGTGACAACAATATGCCTGGTACTACATGTGCCACAGGTTCTGCTTCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

394

Amino Acids

42.92

Weight (kDa)

6.09

Isoelectric Point (pI)

56.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 207
AccB7I CCANNNNNTGG 1 cut(s) 237
AclWI GGATC 3 cut(s) 143, 254, 267
AcsI RAATTY 2 cut(s) 690, 742
AcuI CTGAAG 2 cut(s) 138, 972
AfaI GTAC 6 cut(s) 388, 525, 869, 892, 1030, 1150
AfiI CCNNNNNNNGG 3 cut(s) 237, 353, 964
AflIII ACRYGT 1 cut(s) 1154
AgsI TTSAA 6 cut(s) 256, 365, 407, 717, 787, 904
AhdI GACNNNNNGTC 1 cut(s) 1039
AjnI CCWGG 1 cut(s) 1144
AloI GAACNNNNNNTCC 2 cut(s) 899, 931
AluBI AGCT 5 cut(s) 68, 219, 252, 593, 762
AluI AGCT 5 cut(s) 68, 219, 252, 593, 762
Alw21I GWGCWC 2 cut(s) 662, 764
Alw26I GTCTC 5 cut(s) 308, 573, 633, 837, 1007
AlwI GGATC 3 cut(s) 143, 254, 267
AlwNI CAGNNNCTG 3 cut(s) 47, 71, 1169
AoxI GGCC 3 cut(s) 111, 453, 478
ApaI GGGCCC 1 cut(s) 457
ApeKI GCWGC 8 cut(s) 68, 71, 117, 267, 431, 434, 437, 1076
ApoI RAATTY 2 cut(s) 690, 742
Asp700I GAANNNNTTC 1 cut(s) 694
AspLEI GCGC 2 cut(s) 414, 1008
AspS9I GGNCC 4 cut(s) 453, 454, 557, 803
AsuC2I CCSGG 1 cut(s) 573
AsuHPI GGTGA 2 cut(s) 158, 176
AvaII GGWCC 2 cut(s) 557, 803
BaeGI GKGCMC 1 cut(s) 457
BamHI GGATCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 207
BanII GRGCYC 2 cut(s) 457, 764
BarI GAAGNNNNNNTAC 2 cut(s) 75, 107
BauI CACGAG 2 cut(s) 501, 894
BbsI GAAGAC 2 cut(s) 705, 1035
Bbv12I GWGCWC 2 cut(s) 662, 764
BbvI GCAGC 8 cut(s) 55, 58, 129, 279, 418, 421, 424, 1063
BccI CCATC 7 cut(s) 137, 622, 629, 680, 712, 814, 994
BcgI CGANNNNNNTGC 2 cut(s) 713, 747
BciT130I CCWGG 1 cut(s) 1146
BcnI CCSGG 1 cut(s) 573
BcoDI GTCTC 5 cut(s) 308, 573, 633, 837, 1007
BfaI CTAG 3 cut(s) 540, 750, 768
BfmI CTRYAG 4 cut(s) 115, 603, 1062, 1077
BfoI RGCGCY 1 cut(s) 1009
BisI GCNGC 8 cut(s) 69, 72, 118, 268, 432, 435, 438, 1077
BlsI GCNGC 8 cut(s) 70, 73, 119, 269, 433, 436, 439, 1078
Bme1390I CCNGG 2 cut(s) 573, 1146
Bme18I GGWCC 2 cut(s) 557, 803
BmeRI GACNNNNNGTC 1 cut(s) 1039
BmgT120I GGNCC 4 cut(s) 453, 454, 557, 803
BmiI GGNNCC 4 cut(s) 209, 261, 455, 488
BmrFI CCNGG 2 cut(s) 573, 1146
BmsI GCATC 1 cut(s) 204
BpiI GAAGAC 2 cut(s) 705, 1035
BpmI CTGGAG 2 cut(s) 302, 1068
BpuEI CTTGAG 3 cut(s) 149, 221, 1031
BpuMI CCSGG 1 cut(s) 573
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 352, 463, 571
BsaXI ACNNNNNCTCC 2 cut(s) 899, 929
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 353, 964
Bse1I ACTGG 2 cut(s) 285, 1039
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 1 cut(s) 1146
BseDI CCNNGG 3 cut(s) 352, 463, 571
BseGI GGATG 3 cut(s) 195, 343, 508
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 3 cut(s) 237, 353, 964
BseMII CTCAG 2 cut(s) 534, 958
BseNI ACTGG 2 cut(s) 285, 1039
BseRI GAGGAG 5 cut(s) 146, 540, 591, 769, 901
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 8 cut(s) 55, 58, 129, 279, 418, 421, 424, 1063
BsgI GTGCAG 1 cut(s) 1122
BshFI GGCC 3 cut(s) 113, 455, 480
BshNI GGYRCC 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 662, 764
BsiSI CCGG 1 cut(s) 573
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 3 cut(s) 237, 353, 964
BsmAI GTCTC 5 cut(s) 308, 573, 633, 837, 1007
BsmBI CGTCTC 1 cut(s) 633
BsmFI GGGAC 1 cut(s) 213
BsnI GGCC 3 cut(s) 113, 455, 480
Bsp120I GGGCCC 1 cut(s) 453
Bsp1286I GDGCHC 3 cut(s) 457, 662, 764
Bsp143I GATC 3 cut(s) 148, 259, 491
Bsp19I CCATGG 1 cut(s) 463
BspANI GGCC 3 cut(s) 113, 455, 480
BspCNI CTCAG 2 cut(s) 533, 957
BspLI GGNNCC 4 cut(s) 209, 261, 455, 488
BspMAI CTGCAG 3 cut(s) 119, 1066, 1081
BspPI GGATC 3 cut(s) 143, 254, 267
BspQI GCTCTTC 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 207
BsrI ACTGG 2 cut(s) 285, 1039
BssECI CCNNGG 3 cut(s) 352, 463, 571
BssMI GATC 3 cut(s) 148, 259, 491
BssSI CACGAG 2 cut(s) 501, 894
BssT1I CCWWGG 2 cut(s) 352, 463
Bst2BI CACGAG 2 cut(s) 501, 894
Bst2UI CCWGG 1 cut(s) 1146
Bst4CI ACNGT 4 cut(s) 584, 604, 988, 1100
Bst6I CTCTTC 1 cut(s) 402
BstAPI GCANNNNNTGC 2 cut(s) 123, 326
BstC8I GCNNGC 4 cut(s) 115, 173, 212, 722
BstDEI CTNAG 3 cut(s) 520, 843, 944
BstDSI CCRYGG 1 cut(s) 463
BstF5I GGATG 3 cut(s) 195, 343, 508
BstH2I RGCGCY 1 cut(s) 1009
BstHHI GCGC 2 cut(s) 414, 1008
BstKTI GATC 3 cut(s) 151, 262, 494
BstMAI GTCTC 5 cut(s) 308, 573, 633, 837, 1007
BstMBI GATC 3 cut(s) 148, 259, 491
BstMWI GCNNNNNNNGC 9 cut(s) 114, 123, 216, 326, 437, 486, 759, 768, 980
BstNI CCWGG 1 cut(s) 1146
BstNSI RCATGY 2 cut(s) 724, 1158
BstSCI CCNGG 2 cut(s) 571, 1144
BstSFI CTRYAG 4 cut(s) 115, 603, 1062, 1077
BstSLI GKGCMC 1 cut(s) 457
BstV1I GCAGC 8 cut(s) 55, 58, 129, 279, 418, 421, 424, 1063
BstV2I GAAGAC 2 cut(s) 705, 1035
BstX2I RGATCY 1 cut(s) 259
BstXI CCANNNNNNTGG 2 cut(s) 464, 1046
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 3 cut(s) 113, 455, 480
BtgI CCRYGG 1 cut(s) 463
BtsCI GGATG 3 cut(s) 195, 343, 508
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 3 cut(s) 162, 190, 589
Cac8I GCNNGC 4 cut(s) 115, 173, 212, 722
CaiI CAGNNNCTG 3 cut(s) 47, 71, 1169
CfoI GCGC 2 cut(s) 414, 1008
Cfr13I GGNCC 4 cut(s) 453, 454, 557, 803
Csp6I GTAC 6 cut(s) 387, 524, 868, 891, 1029, 1149
CviAII CATG 7 cut(s) 176, 232, 464, 566, 721, 773, 1155
CviQI GTAC 6 cut(s) 387, 524, 868, 891, 1029, 1149
DdeI CTNAG 3 cut(s) 520, 843, 944
DpnI GATC 3 cut(s) 150, 261, 493
DpnII GATC 3 cut(s) 148, 259, 491
DriI GACNNNNNGTC 1 cut(s) 1039
Eam1104I CTCTTC 1 cut(s) 402
Eam1105I GACNNNNNGTC 1 cut(s) 1039
EarI CTCTTC 1 cut(s) 402
Ecl136II GAGCTC 1 cut(s) 762
Eco130I CCWWGG 2 cut(s) 352, 463
Eco147I AGGCCT 1 cut(s) 113
Eco24I GRGCYC 2 cut(s) 457, 764
Eco32I GATATC 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 557, 803
Eco53kI GAGCTC 1 cut(s) 762
Eco57I CTGAAG 2 cut(s) 138, 972
EcoICRI GAGCTC 1 cut(s) 762
EcoO109I RGGNCCY 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 1144
EcoRV GATATC 1 cut(s) 63
EcoT14I CCWWGG 2 cut(s) 352, 463
EcoT22I ATGCAT 1 cut(s) 726
EcoT38I GRGCYC 2 cut(s) 457, 764
ErhI CCWWGG 2 cut(s) 352, 463
Esp3I CGTCTC 1 cut(s) 633
FaeI CATG 7 cut(s) 179, 235, 467, 569, 724, 776, 1158
FaqI GGGAC 1 cut(s) 213
FatI CATG 7 cut(s) 175, 231, 463, 565, 720, 772, 1154
FauNDI CATATG 2 cut(s) 57, 122
Fnu4HI GCNGC 8 cut(s) 69, 72, 118, 268, 432, 435, 438, 1077
FokI GGATG 3 cut(s) 182, 330, 495
FriOI GRGCYC 2 cut(s) 457, 764
Fsp4HI GCNGC 8 cut(s) 69, 72, 118, 268, 432, 435, 438, 1077
FspBI CTAG 3 cut(s) 540, 750, 768
GlaI GCGC 2 cut(s) 413, 1007
GluI GCNGC 8 cut(s) 69, 72, 118, 268, 432, 435, 438, 1077
GsuI CTGGAG 2 cut(s) 302, 1068
HaeII RGCGCY 1 cut(s) 1009
HaeIII GGCC 3 cut(s) 113, 455, 480
HapII CCGG 1 cut(s) 573
HhaI GCGC 2 cut(s) 414, 1008
Hin1II CATG 7 cut(s) 179, 235, 467, 569, 724, 776, 1158
Hin6I GCGC 2 cut(s) 412, 1006
HinP1I GCGC 2 cut(s) 412, 1006
HinfI GANTC 6 cut(s) 787, 830, 875, 1054, 1070, 1108
HpaII CCGG 1 cut(s) 573
HphI GGTGA 2 cut(s) 158, 176
Hpy166II GTNNAC 2 cut(s) 587, 893
Hpy188I TCNGA 8 cut(s) 634, 681, 811, 829, 837, 940, 952, 1059
Hpy188III TCNNGA 5 cut(s) 26, 651, 791, 993, 1047
Hpy8I GTNNAC 2 cut(s) 587, 893
HpyAV CCTTC 9 cut(s) 77, 162, 250, 444, 465, 470, 537, 681, 898
HpyCH4III ACNGT 4 cut(s) 584, 604, 988, 1100
HpyF10VI GCNNNNNNNGC 9 cut(s) 114, 123, 216, 326, 437, 486, 759, 768, 980
HpyF3I CTNAG 3 cut(s) 520, 843, 944
Hsp92II CATG 7 cut(s) 179, 235, 467, 569, 724, 776, 1158
HspAI GCGC 2 cut(s) 412, 1006
Kzo9I GATC 3 cut(s) 148, 259, 491
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 2 cut(s) 486, 1003
Lsp1109I GCAGC 8 cut(s) 55, 58, 129, 279, 418, 421, 424, 1063
LweI GCATC 1 cut(s) 204
MaeI CTAG 3 cut(s) 540, 750, 768
MaeIII GTNAC 2 cut(s) 160, 1130
MalI GATC 3 cut(s) 150, 261, 493
MboI GATC 3 cut(s) 148, 259, 491
MboII GAAGA 5 cut(s) 315, 419, 687, 705, 1035
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 3 cut(s) 457, 662, 764
MluCI AATT 8 cut(s) 275, 365, 417, 690, 742, 754, 850, 978
MlyI GAGTC 1 cut(s) 839
MmeI TCCRAC 1 cut(s) 918
Mph1103I ATGCAT 1 cut(s) 726
MroXI GAANNNNTTC 1 cut(s) 694
MseI TTAA 2 cut(s) 849, 969
MslI CAYNNNNRTG 2 cut(s) 462, 932
MspA1I CMGCKG 2 cut(s) 68, 593
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 2 cut(s) 573, 1146
MvaI CCWGG 1 cut(s) 1146
MwoI GCNNNNNNNGC 9 cut(s) 114, 123, 216, 326, 437, 486, 759, 768, 980
NciI CCSGG 1 cut(s) 573
NcoI CCATGG 1 cut(s) 463
NdeI CATATG 2 cut(s) 57, 122
NdeII GATC 3 cut(s) 148, 259, 491
NlaIII CATG 7 cut(s) 179, 235, 467, 569, 724, 776, 1158
NlaIV GGNNCC 4 cut(s) 209, 261, 455, 488
NmuCI GTSAC 1 cut(s) 1130
NsiI ATGCAT 1 cut(s) 726
NspI RCATGY 2 cut(s) 724, 1158
PaeI GCATGC 1 cut(s) 724
PceI AGGCCT 1 cut(s) 113
PciI ACATGT 1 cut(s) 1154
PciSI GCTCTTC 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 694
PfeI GAWTC 5 cut(s) 787, 875, 1054, 1070, 1108
PflMI CCANNNNNTGG 1 cut(s) 237
PkrI GCNGC 8 cut(s) 70, 73, 119, 269, 433, 436, 439, 1078
PleI GAGTC 1 cut(s) 838
PpsI GAGTC 1 cut(s) 838
PscI ACATGT 1 cut(s) 1154
Psp124BI GAGCTC 1 cut(s) 764
Psp6I CCWGG 1 cut(s) 1144
PspGI CCWGG 1 cut(s) 1144
PspN4I GGNNCC 4 cut(s) 209, 261, 455, 488
PspOMI GGGCCC 1 cut(s) 453
PspPI GGNCC 4 cut(s) 453, 454, 557, 803
PstI CTGCAG 3 cut(s) 119, 1066, 1081
PstNI CAGNNNCTG 3 cut(s) 47, 71, 1169
PsuI RGATCY 1 cut(s) 259
PvuII CAGCTG 2 cut(s) 68, 593
RsaI GTAC 6 cut(s) 388, 525, 869, 892, 1030, 1150
RsaNI GTAC 6 cut(s) 387, 524, 868, 891, 1029, 1149
RseI CAYNNNNRTG 2 cut(s) 462, 932
SacI GAGCTC 1 cut(s) 764
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 849, 969
SatI GCNGC 8 cut(s) 69, 72, 118, 268, 432, 435, 438, 1077
Sau3AI GATC 3 cut(s) 148, 259, 491
Sau96I GGNCC 4 cut(s) 453, 454, 557, 803
SchI GAGTC 1 cut(s) 839
ScrFI CCNGG 2 cut(s) 573, 1146
SduI GDGCHC 3 cut(s) 457, 662, 764
SfaNI GCATC 1 cut(s) 204
SfcI CTRYAG 4 cut(s) 115, 603, 1062, 1077
SinI GGWCC 2 cut(s) 557, 803
SmiMI CAYNNNNRTG 2 cut(s) 462, 932
SmlI CTYRAG 3 cut(s) 128, 200, 1010
SmoI CTYRAG 3 cut(s) 128, 200, 1010
SphI GCATGC 1 cut(s) 724
Sse9I AATT 8 cut(s) 275, 365, 417, 690, 742, 754, 850, 978
SseBI AGGCCT 1 cut(s) 113
SspMI CTAG 3 cut(s) 540, 750, 768
SstI GAGCTC 1 cut(s) 764
StuI AGGCCT 1 cut(s) 113
StyD4I CCNGG 2 cut(s) 571, 1144
StyI CCWWGG 2 cut(s) 352, 463
TaaI ACNGT 4 cut(s) 584, 604, 988, 1100
TaqI TCGA 2 cut(s) 884, 994
TasI AATT 8 cut(s) 275, 365, 417, 690, 742, 754, 850, 978
TatI WGTACW 1 cut(s) 890
TfiI GAWTC 5 cut(s) 787, 875, 1054, 1070, 1108
Tru1I TTAA 2 cut(s) 849, 969
Tru9I TTAA 2 cut(s) 849, 969
TscAI CASTG 3 cut(s) 162, 197, 589
TseFI GTSAC 1 cut(s) 1130
TseI GCWGC 8 cut(s) 68, 71, 117, 267, 431, 434, 437, 1076
Tsp45I GTSAC 1 cut(s) 1130
TspDTI ATGAA 2 cut(s) 329, 554
TspGWI ACGGA 2 cut(s) 947, 1046
TspRI CASTG 3 cut(s) 162, 197, 589
Van91I CCANNNNNTGG 1 cut(s) 237
VpaK11BI GGWCC 2 cut(s) 557, 803
XapI RAATTY 2 cut(s) 690, 742
XceI RCATGY 2 cut(s) 724, 1158
XmnI GAANNNNTTC 1 cut(s) 694
XspI CTAG 3 cut(s) 540, 750, 768
Zsp2I ATGCAT 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.