RLG00000023734

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004240
Physical Location & Seq
Forward (+)
27624754 .. 27628326
3573 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023734

Sequence Viewer

Length: 1218 bp
ATGAATGGCTCTTCTTCTCTGAATTTCTTGACTACCAATTCTAATCCCTTAATGGAGGTTCCGGATATGGCGGAGGCAAAGAAGGCTGAAACTCAATTGATATCAGCTGCTGCTTTTGTGGAAGGGGGAATACAAGATGCATGTGGTGAAGCCTGTAGCATATGCCTTGAGGATTTTTGTGAAAGTGATCCTTCAGTGCTGACTACTTGCAAGCATGAGTTTCACTTCCACTGCATCCTGGAATGGTGCCAGAGAAGTTCCCAATGTCCAATGTGTTGGCAAGCCCTTAGCCTGAAGGATCCTTCCAGTCAAGAATTACTTGAGGCAGTAGAACGGGAGAGGAGCATTAGGGCCACATCAAGAAATGCAACTATATTCCATCATCCCACCCTCGGCGAATTTGAAGTGCAGCATTTACCTGTGGGTACTAATGATGCTGACCTTGAAGAGCGTATCATCCAGCACTTGGCAGCTGCTGCTTCAATGGGAAGAGCTCACCACATCGGTAGAAGGGAAGGCCAGAGGAACCTGTCATCTGTTCGTGGTCATCCACGCTTCTCAGTGATTTCCACTCATCACAGTGCACCTTCACTTGGTCATGTTTCTGCCTCGGGTGGGGAGAGTGAACCAGCTACCATAACTGCAGCAAGTCCATCTATCCCACTTACATCAGGTGGACATGAATCATCACGATGGAGTTCACAGGTTTCATCTGTTCAAACTGATGGGTTGTCTTCCTCCCCATCTGGGTCTACACTCATGCAAAGAAATCGTCAAGGAGTTCCCTCTAGTCGCTGGAGCTCTACTAGTCAGTCCTCACCAATGAATCAGGAAAGTGCAGGACCATCAGATCTTCAGTCTATTTCAGAGTCTCTGAAATCAAAATTCAATGCCATGTCAATGAAATACAAGGAGTCATTTACAAAGAGTACAAGAGGCTGGAAGGAGAGGCTGTTCTCTCGTAGCACTTCTATGTCAGAACTTGGTTCTGAAGTCCGGAGAGAAGTCAATGCTGGAATTGCTAGTGTATCTCGAATTATAGAGCGCCTTGAGACCAGAGATAATAGTAGAGTTGACCAGGATCCTGTAGCAAATCCAACAGCTGATGGTTCTTTGACTGACCAGGGAAACCAGAACAGTTCTGAGAGTCATGGACGAAGTTTGACCGACAACAATAGGCCTGCAACAACTTGTGCTGCAGGTCCTGCTTCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

406

Amino Acids

43.71

Weight (kDa)

5.93

Isoelectric Point (pI)

58.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 48 - 92 1.3e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 51 - 92 7.7e-10 Ring finger domain
zf-RING_11 PF17123 52 - 79 9.4e-07 RING-like zinc finger
zf-C3HC4 PF00097 52 - 92 6.8e-06 Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11 PF12861 63 - 99 1.6e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1190
AccB1I GGYRCC 1 cut(s) 246
AccB7I CCANNNNNTGG 1 cut(s) 466
AccI GTMKAC 1 cut(s) 752
AccIII TCCGGA 2 cut(s) 61, 996
AciI CCGC 1 cut(s) 71
AclWI GGATC 5 cut(s) 182, 293, 306, 1076, 1089
AcsI RAATTY 3 cut(s) 22, 398, 884
AcuI CTGAAG 4 cut(s) 177, 314, 839, 1011
AfaI GTAC 2 cut(s) 427, 931
AfiI CCNNNNNNNGG 5 cut(s) 392, 466, 593, 615, 747
AgsI TTSAA 5 cut(s) 404, 446, 483, 719, 889
AhlI ACTAGT 1 cut(s) 806
AjnI CCWGG 3 cut(s) 237, 1077, 1122
AloI GAACNNNNNNTCC 2 cut(s) 938, 970
AluBI AGCT 6 cut(s) 107, 473, 494, 632, 801, 1103
AluI AGCT 6 cut(s) 107, 473, 494, 632, 801, 1103
Alw21I GWGCWC 3 cut(s) 496, 586, 803
Alw26I GTCTC 2 cut(s) 876, 1046
Alw44I GTGCAC 1 cut(s) 582
AlwI GGATC 5 cut(s) 182, 293, 306, 1076, 1089
AlwNI CAGNNNCTG 3 cut(s) 110, 476, 1205
Ama87I CYCGRG 1 cut(s) 610
Aor13HI TCCGGA 2 cut(s) 61, 996
AoxI GGCC 3 cut(s) 351, 517, 1178
ApaLI GTGCAC 1 cut(s) 582
ApeKI GCWGC 8 cut(s) 107, 110, 409, 470, 473, 476, 644, 1196
ApoI RAATTY 3 cut(s) 22, 398, 884
ArsI GACNNNNNNTTYG 2 cut(s) 757, 789
AspLEI GCGC 1 cut(s) 1047
AspS9I GGNCC 3 cut(s) 351, 842, 1202
AsuHPI GGTGA 3 cut(s) 158, 488, 810
AvaI CYCGRG 1 cut(s) 610
AvaII GGWCC 2 cut(s) 842, 1202
BaeGI GKGCMC 1 cut(s) 586
BamHI GGATCC 2 cut(s) 298, 1081
BanI GGYRCC 1 cut(s) 246
BanII GRGCYC 2 cut(s) 496, 803
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 3 cut(s) 496, 586, 803
BbvI GCAGC 8 cut(s) 94, 97, 421, 460, 463, 482, 656, 1183
BccI CCATC 7 cut(s) 387, 661, 687, 719, 751, 853, 1100
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 3 cut(s) 239, 1079, 1124
BcoDI GTCTC 2 cut(s) 876, 1046
BcuI ACTAGT 1 cut(s) 806
BfaI CTAG 3 cut(s) 789, 807, 1023
BfmI CTRYAG 4 cut(s) 154, 642, 1086, 1197
BfoI RGCGCY 1 cut(s) 1048
BfuAI ACCTGC 1 cut(s) 1190
BglII AGATCT 1 cut(s) 850
BisI GCNGC 8 cut(s) 108, 111, 410, 471, 474, 477, 645, 1197
BlsI GCNGC 8 cut(s) 109, 112, 411, 472, 475, 478, 646, 1198
Bme1390I CCNGG 3 cut(s) 239, 1079, 1124
Bme18I GGWCC 2 cut(s) 842, 1202
BmeT110I CYCGRG 1 cut(s) 610
BmgT120I GGNCC 3 cut(s) 351, 842, 1202
BmiI GGNNCC 5 cut(s) 60, 248, 300, 527, 1083
BmrFI CCNGG 3 cut(s) 239, 1079, 1124
BmsI GCATC 3 cut(s) 127, 243, 424
BpiI GAAGAC 1 cut(s) 726
BpmI CTGGAG 1 cut(s) 817
Bpu10I CCTNAGC 1 cut(s) 287
BpuEI CTTGAG 3 cut(s) 188, 341, 1070
BsaI GGTCTC 1 cut(s) 1046
BsaJI CCNNGG 3 cut(s) 391, 609, 1123
BsaWI WCCGGW 2 cut(s) 61, 996
BsaXI ACNNNNNCTCC 2 cut(s) 938, 968
Bsc4I CCNNNNNNNGG 5 cut(s) 392, 466, 593, 615, 747
Bse1I ACTGG 1 cut(s) 306
BseAI TCCGGA 2 cut(s) 61, 996
BseBI CCWGG 3 cut(s) 239, 1079, 1124
BseDI CCNNGG 3 cut(s) 391, 609, 1123
BseGI GGATG 4 cut(s) 234, 382, 456, 547
BseLI CCNNNNNNNGG 5 cut(s) 392, 466, 593, 615, 747
BseMII CTCAG 2 cut(s) 573, 1134
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 355
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 8 cut(s) 94, 97, 421, 460, 463, 482, 656, 1183
BsgI GTGCAG 2 cut(s) 428, 858
BshFI GGCC 3 cut(s) 353, 519, 1180
BshNI GGYRCC 1 cut(s) 246
BsiHKAI GWGCWC 3 cut(s) 496, 586, 803
BsiHKCI CYCGRG 1 cut(s) 610
BsiSI CCGG 2 cut(s) 62, 997
BslI CCNNNNNNNGG 5 cut(s) 392, 466, 593, 615, 747
BsmAI GTCTC 2 cut(s) 876, 1046
BsnI GGCC 3 cut(s) 353, 519, 1180
Bso31I GGTCTC 1 cut(s) 1046
BsoBI CYCGRG 1 cut(s) 610
Bsp1286I GDGCHC 3 cut(s) 496, 586, 803
Bsp13I TCCGGA 2 cut(s) 61, 996
Bsp143I GATC 4 cut(s) 187, 298, 850, 1081
BspACI CCGC 1 cut(s) 71
BspANI GGCC 3 cut(s) 353, 519, 1180
BspCNI CTCAG 2 cut(s) 572, 1135
BspEI TCCGGA 2 cut(s) 61, 996
BspLI GGNNCC 5 cut(s) 60, 248, 300, 527, 1083
BspMAI CTGCAG 2 cut(s) 646, 1201
BspMI ACCTGC 1 cut(s) 1190
BspPI GGATC 5 cut(s) 182, 293, 306, 1076, 1089
BspQI GCTCTTC 3 cut(s) 16, 441, 484
BspT107I GGYRCC 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 1046
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 3 cut(s) 391, 609, 1123
BssMI GATC 4 cut(s) 187, 298, 850, 1081
Bst2UI CCWGG 3 cut(s) 239, 1079, 1124
Bst4CI ACNGT 2 cut(s) 581, 1139
Bst6I CTCTTC 3 cut(s) 16, 441, 484
BstAPI GCANNNNNTGC 2 cut(s) 476, 1205
BstC8I GCNNGC 3 cut(s) 212, 282, 1182
BstDEI CTNAG 3 cut(s) 287, 559, 1143
BstF5I GGATG 4 cut(s) 234, 382, 456, 547
BstH2I RGCGCY 1 cut(s) 1048
BstHHI GCGC 1 cut(s) 1047
BstKTI GATC 4 cut(s) 190, 301, 853, 1084
BstMAI GTCTC 2 cut(s) 876, 1046
BstMBI GATC 4 cut(s) 187, 298, 850, 1081
BstMWI GCNNNNNNNGC 4 cut(s) 83, 476, 1019, 1205
BstNI CCWGG 3 cut(s) 239, 1079, 1124
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 3 cut(s) 237, 1077, 1122
BstSFI CTRYAG 4 cut(s) 154, 642, 1086, 1197
BstSLI GKGCMC 1 cut(s) 586
BstV1I GCAGC 8 cut(s) 94, 97, 421, 460, 463, 482, 656, 1183
BstV2I GAAGAC 1 cut(s) 726
BstX2I RGATCY 3 cut(s) 298, 850, 1081
BstXI CCANNNNNNTGG 1 cut(s) 276
BstYI RGATCY 3 cut(s) 298, 850, 1081
BsuRI GGCC 3 cut(s) 353, 519, 1180
BtsCI GGATG 4 cut(s) 234, 382, 456, 547
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 4 cut(s) 201, 229, 567, 586
BveI ACCTGC 1 cut(s) 1190
Cac8I GCNNGC 3 cut(s) 212, 282, 1182
CaiI CAGNNNCTG 3 cut(s) 110, 476, 1205
CfoI GCGC 1 cut(s) 1047
Cfr13I GGNCC 3 cut(s) 351, 842, 1202
Csp6I GTAC 2 cut(s) 426, 930
CviAII CATG 7 cut(s) 141, 215, 599, 680, 760, 895, 1151
CviQI GTAC 2 cut(s) 426, 930
DdeI CTNAG 3 cut(s) 287, 559, 1143
DpnI GATC 4 cut(s) 189, 300, 852, 1083
DpnII GATC 4 cut(s) 187, 298, 850, 1081
Eam1104I CTCTTC 3 cut(s) 16, 441, 484
EarI CTCTTC 3 cut(s) 16, 441, 484
EciI GGCGGA 1 cut(s) 86
Ecl136II GAGCTC 2 cut(s) 494, 801
Eco147I AGGCCT 1 cut(s) 1180
Eco24I GRGCYC 2 cut(s) 496, 803
Eco31I GGTCTC 1 cut(s) 1046
Eco32I GATATC 1 cut(s) 102
Eco47I GGWCC 2 cut(s) 842, 1202
Eco53kI GAGCTC 2 cut(s) 494, 801
Eco57I CTGAAG 4 cut(s) 177, 314, 839, 1011
Eco88I CYCGRG 1 cut(s) 610
EcoICRI GAGCTC 2 cut(s) 494, 801
EcoO109I RGGNCCY 1 cut(s) 1202
EcoRII CCWGG 3 cut(s) 237, 1077, 1122
EcoRV GATATC 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 142
EcoT38I GRGCYC 2 cut(s) 496, 803
FaeI CATG 7 cut(s) 144, 218, 602, 683, 763, 898, 1154
FalI AAGNNNNNCTT 4 cut(s) 175, 207, 303, 335
FatI CATG 7 cut(s) 140, 214, 598, 679, 759, 894, 1150
FauNDI CATATG 1 cut(s) 161
FblI GTMKAC 1 cut(s) 752
Fnu4HI GCNGC 8 cut(s) 108, 111, 410, 471, 474, 477, 645, 1197
FokI GGATG 4 cut(s) 221, 369, 443, 534
FriOI GRGCYC 2 cut(s) 496, 803
Fsp4HI GCNGC 8 cut(s) 108, 111, 410, 471, 474, 477, 645, 1197
FspBI CTAG 3 cut(s) 789, 807, 1023
GlaI GCGC 1 cut(s) 1046
GluI GCNGC 8 cut(s) 108, 111, 410, 471, 474, 477, 645, 1197
GsuI CTGGAG 1 cut(s) 817
HaeII RGCGCY 1 cut(s) 1048
HaeIII GGCC 3 cut(s) 353, 519, 1180
HapII CCGG 2 cut(s) 62, 997
HhaI GCGC 1 cut(s) 1047
Hin1II CATG 7 cut(s) 144, 218, 602, 683, 763, 898, 1154
Hin6I GCGC 1 cut(s) 1045
HinP1I GCGC 1 cut(s) 1045
HincII GTYRAC 1 cut(s) 1075
HindII GTYRAC 1 cut(s) 1075
HinfI GANTC 5 cut(s) 683, 826, 869, 914, 1147
HpaII CCGG 2 cut(s) 62, 997
HphI GGTGA 3 cut(s) 158, 488, 810
Hpy166II GTNNAC 6 cut(s) 584, 626, 677, 701, 753, 1075
Hpy188I TCNGA 7 cut(s) 21, 850, 868, 876, 979, 991, 1144
Hpy188III TCNNGA 8 cut(s) 28, 62, 311, 360, 690, 830, 997, 1032
Hpy8I GTNNAC 6 cut(s) 584, 626, 677, 701, 753, 1075
HpyAV CCTTC 9 cut(s) 76, 116, 201, 289, 312, 504, 509, 597, 937
HpyCH4III ACNGT 2 cut(s) 581, 1139
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 476, 1019, 1205
HpyF3I CTNAG 3 cut(s) 287, 559, 1143
Hsp92II CATG 7 cut(s) 144, 218, 602, 683, 763, 898, 1154
HspAI GCGC 1 cut(s) 1045
Kpn2I TCCGGA 2 cut(s) 61, 996
Kzo9I GATC 4 cut(s) 187, 298, 850, 1081
LguI GCTCTTC 3 cut(s) 16, 441, 484
LmnI GCTCC 2 cut(s) 342, 798
Lsp1109I GCAGC 8 cut(s) 94, 97, 421, 460, 463, 482, 656, 1183
LweI GCATC 3 cut(s) 127, 243, 424
MaeI CTAG 3 cut(s) 789, 807, 1023
MalI GATC 4 cut(s) 189, 300, 852, 1083
MboI GATC 4 cut(s) 187, 298, 850, 1081
MboII GAAGA 6 cut(s) 3, 6, 458, 501, 726, 845
MfeI CAATTG 2 cut(s) 95, 1213
MflI RGATCY 3 cut(s) 298, 850, 1081
MhlI GDGCHC 3 cut(s) 496, 586, 803
MluCI AATT 9 cut(s) 22, 37, 95, 314, 398, 884, 1017, 1035, 1213
MlyI GAGTC 3 cut(s) 878, 923, 1156
MmeI TCCRAC 1 cut(s) 1121
Mph1103I ATGCAT 1 cut(s) 142
MroI TCCGGA 2 cut(s) 61, 996
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 4 cut(s) 579, 691, 899, 971
MspA1I CMGCKG 3 cut(s) 107, 473, 1103
MspI CCGG 2 cut(s) 62, 997
MspR9I CCNGG 3 cut(s) 239, 1079, 1124
MunI CAATTG 2 cut(s) 95, 1213
MvaI CCWGG 3 cut(s) 239, 1079, 1124
MwoI GCNNNNNNNGC 4 cut(s) 83, 476, 1019, 1205
NdeI CATATG 1 cut(s) 161
NdeII GATC 4 cut(s) 187, 298, 850, 1081
NlaIII CATG 7 cut(s) 144, 218, 602, 683, 763, 898, 1154
NlaIV GGNNCC 5 cut(s) 60, 248, 300, 527, 1083
NmeAIII GCCGAG 1 cut(s) 372
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 1 cut(s) 144
PceI AGGCCT 1 cut(s) 1180
PciSI GCTCTTC 3 cut(s) 16, 441, 484
PfeI GAWTC 2 cut(s) 683, 826
PflMI CCANNNNNTGG 1 cut(s) 466
PfoI TCCNGGA 1 cut(s) 237
PkrI GCNGC 8 cut(s) 109, 112, 411, 472, 475, 478, 646, 1198
PleI GAGTC 3 cut(s) 877, 922, 1155
PpsI GAGTC 3 cut(s) 877, 922, 1155
PpuMI RGGWCCY 1 cut(s) 1202
Psp124BI GAGCTC 2 cut(s) 496, 803
Psp5II RGGWCCY 1 cut(s) 1202
Psp6I CCWGG 3 cut(s) 237, 1077, 1122
PspGI CCWGG 3 cut(s) 237, 1077, 1122
PspN4I GGNNCC 5 cut(s) 60, 248, 300, 527, 1083
PspPI GGNCC 3 cut(s) 351, 842, 1202
PspPPI RGGWCCY 1 cut(s) 1202
PstI CTGCAG 2 cut(s) 646, 1201
PstNI CAGNNNCTG 3 cut(s) 110, 476, 1205
PsuI RGATCY 3 cut(s) 298, 850, 1081
PvuII CAGCTG 3 cut(s) 107, 473, 1103
RsaI GTAC 2 cut(s) 427, 931
RsaNI GTAC 2 cut(s) 426, 930
RseI CAYNNNNRTG 4 cut(s) 579, 691, 899, 971
SacI GAGCTC 2 cut(s) 496, 803
SapI GCTCTTC 3 cut(s) 16, 441, 484
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 8 cut(s) 108, 111, 410, 471, 474, 477, 645, 1197
Sau3AI GATC 4 cut(s) 187, 298, 850, 1081
Sau96I GGNCC 3 cut(s) 351, 842, 1202
SchI GAGTC 3 cut(s) 878, 923, 1156
ScrFI CCNGG 3 cut(s) 239, 1079, 1124
SduI GDGCHC 3 cut(s) 496, 586, 803
SfaNI GCATC 3 cut(s) 127, 243, 424
SfcI CTRYAG 4 cut(s) 154, 642, 1086, 1197
SinI GGWCC 2 cut(s) 842, 1202
SmiMI CAYNNNNRTG 4 cut(s) 579, 691, 899, 971
SmlI CTYRAG 3 cut(s) 167, 320, 1049
SmoI CTYRAG 3 cut(s) 167, 320, 1049
SpeI ACTAGT 1 cut(s) 806
Sse9I AATT 9 cut(s) 22, 37, 95, 314, 398, 884, 1017, 1035, 1213
SseBI AGGCCT 1 cut(s) 1180
SsiI CCGC 1 cut(s) 71
SspMI CTAG 3 cut(s) 789, 807, 1023
SstI GAGCTC 2 cut(s) 496, 803
StuI AGGCCT 1 cut(s) 1180
StyD4I CCNGG 3 cut(s) 237, 1077, 1122
TaaI ACNGT 2 cut(s) 581, 1139
TaqI TCGA 1 cut(s) 1033
TaqII GACCGA 1 cut(s) 1181
TasI AATT 9 cut(s) 22, 37, 95, 314, 398, 884, 1017, 1035, 1213
TatI WGTACW 1 cut(s) 929
TfiI GAWTC 2 cut(s) 683, 826
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 4 cut(s) 201, 236, 567, 586
TseI GCWGC 8 cut(s) 107, 110, 409, 470, 473, 476, 644, 1196
TspDTI ATGAA 5 cut(s) 17, 696, 699, 839, 917
TspRI CASTG 4 cut(s) 201, 236, 567, 586
Van91I CCANNNNNTGG 1 cut(s) 466
VneI GTGCAC 1 cut(s) 582
VpaK11BI GGWCC 2 cut(s) 842, 1202
XapI RAATTY 3 cut(s) 22, 398, 884
XceI RCATGY 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 752
XspI CTAG 3 cut(s) 789, 807, 1023
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.