Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000348.1

Orthogroup ID

OG0004240

Physical Location & Seq

Genomic Coordinates Reverse (-)

19595 .. 21907

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000348.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgacggaggcaaagaaggctgaaactcaattgatatcagctgctgcttttgtggaagggggaatacaagatgcatgtggtgaagcctgtagcatatgccttgaggatttttgtgaaagtgatccttcagtgctgactacttgcaagcatgagtttcacttccactgcatcctggaatggtgccagagaagttcccaatgtccgatgtgttggcaagcccttagcctgaaggatccttccagtcaagaattactggaggcagtagaacgggagaggagcattagggccacatcaagaaatgcagctatattccatcatcccacccttggcgaatttgaagtgcagcatttacctgtgggtactaatgatgctgaccttgaagagcgtatcatccagcacttggcagctgctgcttcaatgggaagggctcaccacattggtagaagggaaggccagaggaaccggtcatctgttcgtggtcatccacacttctcagttatttccactcatcatagtgcagcttcacttggtcatgtttctgcctcgggtggggagagtgaacccgctatcataactgcagcaagtccatctatcccacttacatcaggtggaaatgaatcatcacgttggagttcacaagtttcatctgttcaaactgatgggttttcttcctccccacctgggcctacacttatgcaaagaaatcgtgttccctctagtcgctggagctctactagtcagtcctcaccaatgaatcaggaaagtgcaggaccatcagatcttcagtctatttcagagtctctgaaatcaaaattcaatgccatgtcaatgaaatataaggagtcattttcaaagagtacaagaggctggaaggagaggctgttctctcgtagcacttctatgtcagaacttggttccgaagtccggagagaagtcaatgctggaattgctagtgtatctcgaattatagagcgccttgagaccagagataatagtagagttgaccaggatcatgtagcaaatccaacagcagatggttctttgactgaccagggaaaccagaacagcgctgagagtcatggaggaagtttgaccaataacaataggcctgcgacaacttgtgctgcaggtcctgcttccaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

381

Amino Acids

41.12

Weight (kDa)

6.15

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20900 FvH4_6g20900 FvH4_6g20900 FvH4_6g20900 FvH4_6g20900 FvH4_6g20900 FvH4_6g20900
malus_domestica	MD12G1045000.v1.1 MD14G1043800.v1.1
prunus_persica	Prupe.7G090500_v2.0.a1 Prupe.7G090500_v2.0.a1 Prupe.7G090500_v2.0.a1 Prupe.7G090500_v2.0.a1 Prupe.7G090500_v2.0.a1 Prupe.7G090500_v2.0.a1
pyrus_communis	pycom12g03880 pycom14g03720
rosa_chinensis	RchiOBHm_Chr3g0477251
rosa_laevigata	RLG00000023734
rosa_multiflora	Rmu_co8521747.1_g000001 Rmu_sc0000348.1_g000004
rosa_roxburghii	Rroxscaffold_6G00404290 Rroxscaffold_6G00404770
rosa_rugosa	Rorug03G0159000.1 Rorug03G0159100 Rorug03G0159200 Rorug03G0159300
rosa_samantha	Rh3AG209600 Rh3BG243000 Rh3CG237100 Rh3DG236200
rosa_wichuraiana	Rw0G000250 Rw0G021740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1118
AccB1I	GGYRCC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccIII	TCCGGA	1 cut(s)	924
AciI	CCGC	1 cut(s)	564
AclWI	GGATC	4 cut(s)	116, 227, 240, 1017
AcsI	RAATTY	2 cut(s)	332, 812
AcuI	CTGAAG	3 cut(s)	111, 248, 767
AfaI	GTAC	2 cut(s)	361, 859
AfeI	AGCGCT	1 cut(s)	1069
AfiI	CCNNNNNNNGG	5 cut(s)	326, 400, 549, 681, 924
AgeI	ACCGGT	1 cut(s)	462
AgsI	TTSAA	6 cut(s)	338, 380, 417, 653, 817, 852
AhlI	ACTAGT	1 cut(s)	734
AjnI	CCWGG	4 cut(s)	171, 679, 1005, 1050
AloI	GAACNNNNNNTCC	2 cut(s)	866, 898
AluBI	AGCT	5 cut(s)	41, 305, 407, 521, 729
AluI	AGCT	5 cut(s)	41, 305, 407, 521, 729
Alw21I	GWGCWC	1 cut(s)	731
Alw26I	GTCTC	2 cut(s)	804, 974
AlwI	GGATC	4 cut(s)	116, 227, 240, 1017
AlwNI	CAGNNNCTG	3 cut(s)	44, 410, 1133
Ama87I	CYCGRG	1 cut(s)	544
Aor13HI	TCCGGA	1 cut(s)	924
Aor51HI	AGCGCT	1 cut(s)	1069
AoxI	GGCC	4 cut(s)	285, 451, 683, 1106
ApoI	RAATTY	2 cut(s)	332, 812
AsiGI	ACCGGT	1 cut(s)	462
AspLEI	GCGC	2 cut(s)	975, 1070
AspS9I	GGNCC	4 cut(s)	285, 683, 770, 1130
AsuHPI	GGTGA	3 cut(s)	92, 422, 738
AvaI	CYCGRG	1 cut(s)	544
AvaII	GGWCC	2 cut(s)	770, 1130
BamHI	GGATCC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	430, 731
BarI	GAAGNNNNNNTAC	2 cut(s)	48, 80
Bbv12I	GWGCWC	1 cut(s)	731
BccI	CCATC	5 cut(s)	321, 595, 653, 781, 1028
BcgI	CGANNNNNNTGC	2 cut(s)	686, 720
BciT130I	CCWGG	4 cut(s)	173, 681, 1007, 1052
BcoDI	GTCTC	2 cut(s)	804, 974
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	3 cut(s)	717, 735, 951
BfmI	CTRYAG	3 cut(s)	88, 576, 1125
BfoI	RGCGCY	2 cut(s)	976, 1071
BfuAI	ACCTGC	1 cut(s)	1118
BglII	AGATCT	1 cut(s)	778
Bme1390I	CCNGG	4 cut(s)	173, 681, 1007, 1052
Bme18I	GGWCC	2 cut(s)	770, 1130
BmeT110I	CYCGRG	1 cut(s)	544
BmgT120I	GGNCC	4 cut(s)	285, 683, 770, 1130
BmiI	GGNNCC	4 cut(s)	182, 234, 461, 916
BmrFI	CCNGG	4 cut(s)	173, 681, 1007, 1052
BmsI	GCATC	3 cut(s)	61, 177, 358
BpmI	CTGGAG	2 cut(s)	275, 745
Bpu10I	CCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	2 cut(s)	122, 998
BsaI	GGTCTC	1 cut(s)	974
BsaJI	CCNNGG	4 cut(s)	325, 543, 680, 1051
BsaWI	WCCGGW	2 cut(s)	462, 924
BsaXI	ACNNNNNCTCC	2 cut(s)	866, 896
Bsc4I	CCNNNNNNNGG	5 cut(s)	326, 400, 549, 681, 924
Bse118I	RCCGGY	1 cut(s)	462
Bse1I	ACTGG	2 cut(s)	240, 258
BseAI	TCCGGA	1 cut(s)	924
BseBI	CCWGG	4 cut(s)	173, 681, 1007, 1052
BseDI	CCNNGG	4 cut(s)	325, 543, 680, 1051
BseGI	GGATG	4 cut(s)	168, 316, 390, 481
BseLI	CCNNNNNNNGG	5 cut(s)	326, 400, 549, 681, 924
BseMII	CTCAG	2 cut(s)	507, 1062
BseNI	ACTGG	2 cut(s)	240, 258
BseRI	GAGGAG	1 cut(s)	289
BsgI	GTGCAG	3 cut(s)	362, 537, 786
BshFI	GGCC	4 cut(s)	287, 453, 685, 1108
BshNI	GGYRCC	1 cut(s)	180
BshTI	ACCGGT	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	731
BsiHKCI	CYCGRG	1 cut(s)	544
BsiSI	CCGG	2 cut(s)	463, 925
BslI	CCNNNNNNNGG	5 cut(s)	326, 400, 549, 681, 924
BsmAI	GTCTC	2 cut(s)	804, 974
BsnI	GGCC	4 cut(s)	287, 453, 685, 1108
Bso31I	GGTCTC	1 cut(s)	974
BsoBI	CYCGRG	1 cut(s)	544
Bsp1286I	GDGCHC	2 cut(s)	430, 731
Bsp13I	TCCGGA	1 cut(s)	924
Bsp143I	GATC	4 cut(s)	121, 232, 778, 1009
BspACI	CCGC	1 cut(s)	564
BspANI	GGCC	4 cut(s)	287, 453, 685, 1108
BspCNI	CTCAG	2 cut(s)	506, 1063
BspEI	TCCGGA	1 cut(s)	924
BspLI	GGNNCC	4 cut(s)	182, 234, 461, 916
BspMAI	CTGCAG	2 cut(s)	580, 1129
BspMI	ACCTGC	1 cut(s)	1118
BspPI	GGATC	4 cut(s)	116, 227, 240, 1017
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	180
BspTNI	GGTCTC	1 cut(s)	974
BsrFI	RCCGGY	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	240, 258
BssAI	RCCGGY	1 cut(s)	462
BssECI	CCNNGG	4 cut(s)	325, 543, 680, 1051
BssMI	GATC	4 cut(s)	121, 232, 778, 1009
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	4 cut(s)	173, 681, 1007, 1052
Bst6I	CTCTTC	1 cut(s)	375
BstAPI	GCANNNNNTGC	2 cut(s)	410, 1133
BstC8I	GCNNGC	3 cut(s)	146, 216, 1110
BstDEI	CTNAG	3 cut(s)	221, 493, 1071
BstF5I	GGATG	4 cut(s)	168, 316, 390, 481
BstH2I	RGCGCY	2 cut(s)	976, 1071
BstHHI	GCGC	2 cut(s)	975, 1070
BstKTI	GATC	4 cut(s)	124, 235, 781, 1012
BstMAI	GTCTC	2 cut(s)	804, 974
BstMBI	GATC	4 cut(s)	121, 232, 778, 1009
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 410, 947, 1133
BstNI	CCWGG	4 cut(s)	173, 681, 1007, 1052
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	4 cut(s)	171, 679, 1005, 1050
BstSFI	CTRYAG	3 cut(s)	88, 576, 1125
BstX2I	RGATCY	2 cut(s)	232, 778
BstYI	RGATCY	2 cut(s)	232, 778
BsuRI	GGCC	4 cut(s)	287, 453, 685, 1108
BtsCI	GGATG	4 cut(s)	168, 316, 390, 481
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	2 cut(s)	135, 163
BveI	ACCTGC	1 cut(s)	1118
Cac8I	GCNNGC	3 cut(s)	146, 216, 1110
CaiI	CAGNNNCTG	3 cut(s)	44, 410, 1133
CfoI	GCGC	2 cut(s)	975, 1070
Cfr10I	RCCGGY	1 cut(s)	462
Cfr13I	GGNCC	4 cut(s)	285, 683, 770, 1130
Csp6I	GTAC	2 cut(s)	360, 858
CspAI	ACCGGT	1 cut(s)	462
CviAII	CATG	6 cut(s)	75, 149, 533, 823, 1013, 1079
CviQI	GTAC	2 cut(s)	360, 858
DdeI	CTNAG	3 cut(s)	221, 493, 1071
DpnI	GATC	4 cut(s)	123, 234, 780, 1011
DpnII	GATC	4 cut(s)	121, 232, 778, 1009
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	325
Eco147I	AGGCCT	1 cut(s)	1108
Eco24I	GRGCYC	2 cut(s)	430, 731
Eco31I	GGTCTC	1 cut(s)	974
Eco32I	GATATC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	770, 1130
Eco47III	AGCGCT	1 cut(s)	1069
Eco53kI	GAGCTC	1 cut(s)	729
Eco57I	CTGAAG	3 cut(s)	111, 248, 767
Eco88I	CYCGRG	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	729
EcoO109I	RGGNCCY	1 cut(s)	1130
EcoRII	CCWGG	4 cut(s)	171, 679, 1005, 1050
EcoRV	GATATC	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	76
EcoT38I	GRGCYC	2 cut(s)	430, 731
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	6 cut(s)	78, 152, 536, 826, 1016, 1082
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FatI	CATG	6 cut(s)	74, 148, 532, 822, 1012, 1078
FauI	CCCGC	1 cut(s)	571
FauNDI	CATATG	1 cut(s)	95
FokI	GGATG	4 cut(s)	155, 303, 377, 468
FriOI	GRGCYC	2 cut(s)	430, 731
FspBI	CTAG	3 cut(s)	717, 735, 951
GlaI	GCGC	2 cut(s)	974, 1069
GsuI	CTGGAG	2 cut(s)	275, 745
HaeII	RGCGCY	2 cut(s)	976, 1071
HaeIII	GGCC	4 cut(s)	287, 453, 685, 1108
HapII	CCGG	2 cut(s)	463, 925
HhaI	GCGC	2 cut(s)	975, 1070
Hin1II	CATG	6 cut(s)	78, 152, 536, 826, 1016, 1082
Hin6I	GCGC	2 cut(s)	973, 1068
HinP1I	GCGC	2 cut(s)	973, 1068
HincII	GTYRAC	1 cut(s)	1003
HindII	GTYRAC	1 cut(s)	1003
HinfI	GANTC	5 cut(s)	617, 754, 797, 842, 1075
HpaII	CCGG	2 cut(s)	463, 925
HphI	GGTGA	3 cut(s)	92, 422, 738
Hpy166II	GTNNAC	3 cut(s)	560, 635, 1003
Hpy188I	TCNGA	6 cut(s)	204, 778, 796, 804, 907, 919
Hpy188III	TCNNGA	5 cut(s)	245, 294, 758, 925, 960
Hpy8I	GTNNAC	3 cut(s)	560, 635, 1003
HpyAV	CCTTC	9 cut(s)	10, 50, 135, 223, 246, 417, 438, 443, 865
HpyCH4IV	ACGT	1 cut(s)	625
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 410, 947, 1133
HpyF3I	CTNAG	3 cut(s)	221, 493, 1071
HpySE526I	ACGT	1 cut(s)	625
Hsp92II	CATG	6 cut(s)	78, 152, 536, 826, 1016, 1082
HspAI	GCGC	2 cut(s)	973, 1068
Kpn2I	TCCGGA	1 cut(s)	924
Kzo9I	GATC	4 cut(s)	121, 232, 778, 1009
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	2 cut(s)	276, 726
LweI	GCATC	3 cut(s)	61, 177, 358
MaeI	CTAG	3 cut(s)	717, 735, 951
MaeII	ACGT	1 cut(s)	625
MalI	GATC	4 cut(s)	123, 234, 780, 1011
MboI	GATC	4 cut(s)	121, 232, 778, 1009
MboII	GAAGA	3 cut(s)	392, 660, 773
MfeI	CAATTG	2 cut(s)	29, 1141
MflI	RGATCY	2 cut(s)	232, 778
MhlI	GDGCHC	2 cut(s)	430, 731
MluCI	AATT	7 cut(s)	29, 248, 332, 812, 945, 963, 1141
MlyI	GAGTC	3 cut(s)	806, 851, 1084
MmeI	TCCRAC	2 cut(s)	608, 1049
Mph1103I	ATGCAT	1 cut(s)	76
MroI	TCCGGA	1 cut(s)	924
MslI	CAYNNNNRTG	3 cut(s)	513, 827, 899
MspA1I	CMGCKG	2 cut(s)	41, 407
MspI	CCGG	2 cut(s)	463, 925
MspR9I	CCNGG	4 cut(s)	173, 681, 1007, 1052
MunI	CAATTG	2 cut(s)	29, 1141
MvaI	CCWGG	4 cut(s)	173, 681, 1007, 1052
MwoI	GCNNNNNNNGC	4 cut(s)	17, 410, 947, 1133
NdeI	CATATG	1 cut(s)	95
NdeII	GATC	4 cut(s)	121, 232, 778, 1009
NlaIII	CATG	6 cut(s)	78, 152, 536, 826, 1016, 1082
NlaIV	GGNNCC	4 cut(s)	182, 234, 461, 916
NsiI	ATGCAT	1 cut(s)	76
NspI	RCATGY	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	1108
PciSI	GCTCTTC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	617, 754
PflMI	CCANNNNNTGG	1 cut(s)	400
PfoI	TCCNGGA	1 cut(s)	171
PinAI	ACCGGT	1 cut(s)	462
PleI	GAGTC	3 cut(s)	805, 850, 1083
PpsI	GAGTC	3 cut(s)	805, 850, 1083
PpuMI	RGGWCCY	1 cut(s)	1130
Psp124BI	GAGCTC	1 cut(s)	731
Psp5II	RGGWCCY	1 cut(s)	1130
Psp6I	CCWGG	4 cut(s)	171, 679, 1005, 1050
PspGI	CCWGG	4 cut(s)	171, 679, 1005, 1050
PspN4I	GGNNCC	4 cut(s)	182, 234, 461, 916
PspPI	GGNCC	4 cut(s)	285, 683, 770, 1130
PspPPI	RGGWCCY	1 cut(s)	1130
PstI	CTGCAG	2 cut(s)	580, 1129
PstNI	CAGNNNCTG	3 cut(s)	44, 410, 1133
PsuI	RGATCY	2 cut(s)	232, 778
PvuII	CAGCTG	2 cut(s)	41, 407
RsaI	GTAC	2 cut(s)	361, 859
RsaNI	GTAC	2 cut(s)	360, 858
RseI	CAYNNNNRTG	3 cut(s)	513, 827, 899
SacI	GAGCTC	1 cut(s)	731
SapI	GCTCTTC	1 cut(s)	375
Sau3AI	GATC	4 cut(s)	121, 232, 778, 1009
Sau96I	GGNCC	4 cut(s)	285, 683, 770, 1130
SchI	GAGTC	3 cut(s)	806, 851, 1084
ScrFI	CCNGG	4 cut(s)	173, 681, 1007, 1052
SduI	GDGCHC	2 cut(s)	430, 731
SfaNI	GCATC	3 cut(s)	61, 177, 358
SfcI	CTRYAG	3 cut(s)	88, 576, 1125
SinI	GGWCC	2 cut(s)	770, 1130
SmiMI	CAYNNNNRTG	3 cut(s)	513, 827, 899
SmlI	CTYRAG	2 cut(s)	101, 977
SmoI	CTYRAG	2 cut(s)	101, 977
SpeI	ACTAGT	1 cut(s)	734
Sse9I	AATT	7 cut(s)	29, 248, 332, 812, 945, 963, 1141
SseBI	AGGCCT	1 cut(s)	1108
SsiI	CCGC	1 cut(s)	564
SspMI	CTAG	3 cut(s)	717, 735, 951
SstI	GAGCTC	1 cut(s)	731
StuI	AGGCCT	1 cut(s)	1108
StyD4I	CCNGG	4 cut(s)	171, 679, 1005, 1050
StyI	CCWWGG	1 cut(s)	325
TaiI	ACGT	1 cut(s)	628
TaqI	TCGA	1 cut(s)	961
TasI	AATT	7 cut(s)	29, 248, 332, 812, 945, 963, 1141
TatI	WGTACW	1 cut(s)	857
TfiI	GAWTC	2 cut(s)	617, 754
TscAI	CASTG	2 cut(s)	135, 170
TspDTI	ATGAA	4 cut(s)	630, 633, 767, 845
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	2 cut(s)	135, 170
Van91I	CCANNNNNTGG	1 cut(s)	400
VpaK11BI	GGWCC	2 cut(s)	770, 1130
XapI	RAATTY	2 cut(s)	332, 812
XceI	RCATGY	1 cut(s)	78
XspI	CTAG	3 cut(s)	717, 735, 951
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.