Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004240

Physical Location & Seq

Genomic Coordinates Reverse (-)

22532252 .. 22536386

Gene Structure 4135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG237100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTGTTGGCAAGCCCTTAGCCTGAAGGATCCTTCCAGTCAAGAATTACTGGAGGCAGTAGAACGGGAGAGGAGCATTAGGGCCACATCAAGAAATGCAGCTATATTCCATCATCCCACCCTTGGCGAATTTGAATTACCTGTGGGTACTAATGATGCTGACCTTGAAGAGCGTATCATCCAGCACTTGGCAGCTGCTGCTTCAATGGGAAGGGCTCACCACATTGGTAGAAGGGAAGGCCAGAGGAACCGGTCATCTGTTCGTGGTCATCCACACTTCTCAGTTATTTCCACTCATCATAGTGCAGCTTCACTTGGTCATGTTTCTGCCTCGGGTGGGGAGAGTGAACCAGCTATCATAACTGCAGCAAGTCCATCTATCCCACTTACATCAGGTGGAAATGAATCATCACGTTGGAGTTCACAAGTTTCATCTGTTCAAACTGATGGGTTTTCTTCCTCCCCACCTGGGCCTACACTTATGCAAAGAAATCGTGTTCCCTCTAGTCGCTGGAGCTCTACTAGTCAGTCCTCACCAATGAATCAGGAAAGTGCAGGACCATCAGATCTTCAGTCTATTTCAGAGTCTCTGAAATCAAAATTCAATGCCATGTCAATGAAATATAAGGAGTCATTTTCAAAGAGTACAAGAGGCTGGAAGGAGAGGCTGTTCTCTCGTAGCACTTCTATGTCAGAACTTGGTTCCGAAGTCCGGAGAGAAGTCAATGCTGGAATTGCTAGTGTATCTCGAATTATAGAGCGCCTTGAGACCAGAGATAATAGTAGAGCTGACCAGGATCCTGTAGCAAATCCAACAGCAGATGGTTCTCTGACTGACCAGGGAAACCAGAACAGCGCTGAGAGTCATGGAGGAAGTTTGACCAATAACAATAGGCCTGCGACAACTTGTGCTGCAGGTCCTGCTTCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

310

Amino Acids

33.22

Weight (kDa)

7.21

Isoelectric Point (pI)

61.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20900 FvH4_6g20900 FvH4_6g20900 FvH4_6g20900 FvH4_6g20900 FvH4_6g20900 FvH4_6g20900
malus_domestica	MD12G1045000.v1.1 MD14G1043800.v1.1
prunus_persica	Prupe.7G090500_v2.0.a1 Prupe.7G090500_v2.0.a1 Prupe.7G090500_v2.0.a1 Prupe.7G090500_v2.0.a1 Prupe.7G090500_v2.0.a1 Prupe.7G090500_v2.0.a1
pyrus_communis	pycom12g03880 pycom14g03720
rosa_chinensis	RchiOBHm_Chr3g0477251
rosa_laevigata	RLG00000023734
rosa_multiflora	Rmu_co8521747.1_g000001 Rmu_sc0000348.1_g000004
rosa_roxburghii	Rroxscaffold_6G00404290 Rroxscaffold_6G00404770
rosa_rugosa	Rorug03G0159000.1 Rorug03G0159100 Rorug03G0159200 Rorug03G0159300
rosa_samantha	Rh3AG209600 Rh3BG243000 Rh3CG237100 Rh3DG236200
rosa_wichuraiana	Rw0G000250 Rw0G021740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	905
AccB7I	CCANNNNNTGG	1 cut(s)	187
AccIII	TCCGGA	1 cut(s)	711
AclWI	GGATC	4 cut(s)	23, 36, 791, 804
AcsI	RAATTY	2 cut(s)	128, 599
AcuI	CTGAAG	2 cut(s)	44, 554
AfaI	GTAC	2 cut(s)	148, 646
AfeI	AGCGCT	1 cut(s)	856
AfiI	CCNNNNNNNGG	5 cut(s)	122, 187, 336, 468, 711
AgeI	ACCGGT	1 cut(s)	249
AgsI	TTSAA	6 cut(s)	134, 167, 204, 440, 604, 639
AhlI	ACTAGT	1 cut(s)	521
AjnI	CCWGG	3 cut(s)	466, 792, 837
AloI	GAACNNNNNNTCC	2 cut(s)	653, 685
AluBI	AGCT	6 cut(s)	101, 194, 308, 353, 516, 788
AluI	AGCT	6 cut(s)	101, 194, 308, 353, 516, 788
Alw21I	GWGCWC	1 cut(s)	518
Alw26I	GTCTC	2 cut(s)	591, 761
AlwI	GGATC	4 cut(s)	23, 36, 791, 804
AlwNI	CAGNNNCTG	2 cut(s)	197, 920
Ama87I	CYCGRG	1 cut(s)	331
Aor13HI	TCCGGA	1 cut(s)	711
Aor51HI	AGCGCT	1 cut(s)	856
AoxI	GGCC	4 cut(s)	81, 238, 470, 893
ApeKI	GCWGC	7 cut(s)	98, 191, 194, 197, 305, 365, 911
ApoI	RAATTY	2 cut(s)	128, 599
AsiGI	ACCGGT	1 cut(s)	249
AspLEI	GCGC	2 cut(s)	762, 857
AspS9I	GGNCC	4 cut(s)	81, 470, 557, 917
AsuHPI	GGTGA	2 cut(s)	209, 525
AvaI	CYCGRG	1 cut(s)	331
AvaII	GGWCC	2 cut(s)	557, 917
BamHI	GGATCC	2 cut(s)	28, 796
BanII	GRGCYC	2 cut(s)	217, 518
Bbv12I	GWGCWC	1 cut(s)	518
BbvI	GCAGC	7 cut(s)	110, 181, 184, 203, 317, 377, 898
BccI	CCATC	5 cut(s)	117, 382, 440, 568, 815
BcgI	CGANNNNNNTGC	2 cut(s)	473, 507
BciT130I	CCWGG	3 cut(s)	468, 794, 839
BcoDI	GTCTC	2 cut(s)	591, 761
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	3 cut(s)	504, 522, 738
BfmI	CTRYAG	3 cut(s)	363, 801, 912
BfoI	RGCGCY	2 cut(s)	763, 858
BfuAI	ACCTGC	1 cut(s)	905
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	7 cut(s)	99, 192, 195, 198, 306, 366, 912
BlsI	GCNGC	7 cut(s)	100, 193, 196, 199, 307, 367, 913
Bme1390I	CCNGG	3 cut(s)	468, 794, 839
Bme18I	GGWCC	2 cut(s)	557, 917
BmeT110I	CYCGRG	1 cut(s)	331
BmgT120I	GGNCC	4 cut(s)	81, 470, 557, 917
BmiI	GGNNCC	4 cut(s)	30, 248, 703, 798
BmrFI	CCNGG	3 cut(s)	468, 794, 839
BmsI	GCATC	1 cut(s)	145
BpmI	CTGGAG	2 cut(s)	71, 532
Bpu10I	CCTNAGC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	785
BsaI	GGTCTC	1 cut(s)	761
BsaJI	CCNNGG	4 cut(s)	121, 330, 467, 838
BsaWI	WCCGGW	2 cut(s)	249, 711
BsaXI	ACNNNNNCTCC	2 cut(s)	653, 683
Bsc4I	CCNNNNNNNGG	5 cut(s)	122, 187, 336, 468, 711
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	2 cut(s)	36, 54
BseAI	TCCGGA	1 cut(s)	711
BseBI	CCWGG	3 cut(s)	468, 794, 839
BseDI	CCNNGG	4 cut(s)	121, 330, 467, 838
BseGI	GGATG	3 cut(s)	112, 177, 268
BseLI	CCNNNNNNNGG	5 cut(s)	122, 187, 336, 468, 711
BseMII	CTCAG	2 cut(s)	294, 849
BseNI	ACTGG	2 cut(s)	36, 54
BseRI	GAGGAG	1 cut(s)	85
BseXI	GCAGC	7 cut(s)	110, 181, 184, 203, 317, 377, 898
BsgI	GTGCAG	2 cut(s)	324, 573
BshFI	GGCC	4 cut(s)	83, 240, 472, 895
BshTI	ACCGGT	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	518
BsiHKCI	CYCGRG	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	250, 712
BslI	CCNNNNNNNGG	5 cut(s)	122, 187, 336, 468, 711
BsmAI	GTCTC	2 cut(s)	591, 761
BsnI	GGCC	4 cut(s)	83, 240, 472, 895
Bso31I	GGTCTC	1 cut(s)	761
BsoBI	CYCGRG	1 cut(s)	331
Bsp1286I	GDGCHC	2 cut(s)	217, 518
Bsp13I	TCCGGA	1 cut(s)	711
Bsp143I	GATC	3 cut(s)	28, 565, 796
BspANI	GGCC	4 cut(s)	83, 240, 472, 895
BspCNI	CTCAG	2 cut(s)	293, 850
BspEI	TCCGGA	1 cut(s)	711
BspLI	GGNNCC	4 cut(s)	30, 248, 703, 798
BspMAI	CTGCAG	2 cut(s)	367, 916
BspMI	ACCTGC	1 cut(s)	905
BspPI	GGATC	4 cut(s)	23, 36, 791, 804
BspQI	GCTCTTC	1 cut(s)	162
BspTNI	GGTCTC	1 cut(s)	761
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	36, 54
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	4 cut(s)	121, 330, 467, 838
BssMI	GATC	3 cut(s)	28, 565, 796
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	3 cut(s)	468, 794, 839
Bst6I	CTCTTC	1 cut(s)	162
BstAPI	GCANNNNNTGC	2 cut(s)	197, 920
BstC8I	GCNNGC	2 cut(s)	12, 897
BstDEI	CTNAG	3 cut(s)	17, 280, 858
BstF5I	GGATG	3 cut(s)	112, 177, 268
BstH2I	RGCGCY	2 cut(s)	763, 858
BstHHI	GCGC	2 cut(s)	762, 857
BstKTI	GATC	3 cut(s)	31, 568, 799
BstMAI	GTCTC	2 cut(s)	591, 761
BstMBI	GATC	3 cut(s)	28, 565, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 734, 920
BstNI	CCWGG	3 cut(s)	468, 794, 839
BstSCI	CCNGG	3 cut(s)	466, 792, 837
BstSFI	CTRYAG	3 cut(s)	363, 801, 912
BstV1I	GCAGC	7 cut(s)	110, 181, 184, 203, 317, 377, 898
BstX2I	RGATCY	3 cut(s)	28, 565, 796
BstYI	RGATCY	3 cut(s)	28, 565, 796
BsuRI	GGCC	4 cut(s)	83, 240, 472, 895
BtsCI	GGATG	3 cut(s)	112, 177, 268
BveI	ACCTGC	1 cut(s)	905
Cac8I	GCNNGC	2 cut(s)	12, 897
CaiI	CAGNNNCTG	2 cut(s)	197, 920
CfoI	GCGC	2 cut(s)	762, 857
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	4 cut(s)	81, 470, 557, 917
Csp6I	GTAC	2 cut(s)	147, 645
CspAI	ACCGGT	1 cut(s)	249
CviAII	CATG	3 cut(s)	320, 610, 866
CviQI	GTAC	2 cut(s)	147, 645
DdeI	CTNAG	3 cut(s)	17, 280, 858
DpnI	GATC	3 cut(s)	30, 567, 798
DpnII	GATC	3 cut(s)	28, 565, 796
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	895
Eco24I	GRGCYC	2 cut(s)	217, 518
Eco31I	GGTCTC	1 cut(s)	761
Eco47I	GGWCC	2 cut(s)	557, 917
Eco47III	AGCGCT	1 cut(s)	856
Eco53kI	GAGCTC	1 cut(s)	516
Eco57I	CTGAAG	2 cut(s)	44, 554
Eco88I	CYCGRG	1 cut(s)	331
EcoICRI	GAGCTC	1 cut(s)	516
EcoO109I	RGGNCCY	1 cut(s)	917
EcoRII	CCWGG	3 cut(s)	466, 792, 837
EcoT14I	CCWWGG	1 cut(s)	121
EcoT38I	GRGCYC	2 cut(s)	217, 518
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	3 cut(s)	323, 613, 869
FatI	CATG	3 cut(s)	319, 609, 865
Fnu4HI	GCNGC	7 cut(s)	99, 192, 195, 198, 306, 366, 912
FokI	GGATG	3 cut(s)	99, 164, 255
FriOI	GRGCYC	2 cut(s)	217, 518
Fsp4HI	GCNGC	7 cut(s)	99, 192, 195, 198, 306, 366, 912
FspBI	CTAG	3 cut(s)	504, 522, 738
GlaI	GCGC	2 cut(s)	761, 856
GluI	GCNGC	7 cut(s)	99, 192, 195, 198, 306, 366, 912
GsuI	CTGGAG	2 cut(s)	71, 532
HaeII	RGCGCY	2 cut(s)	763, 858
HaeIII	GGCC	4 cut(s)	83, 240, 472, 895
HapII	CCGG	2 cut(s)	250, 712
HhaI	GCGC	2 cut(s)	762, 857
Hin1II	CATG	3 cut(s)	323, 613, 869
Hin6I	GCGC	2 cut(s)	760, 855
HinP1I	GCGC	2 cut(s)	760, 855
HinfI	GANTC	5 cut(s)	404, 541, 584, 629, 862
HpaII	CCGG	2 cut(s)	250, 712
HphI	GGTGA	2 cut(s)	209, 525
Hpy166II	GTNNAC	2 cut(s)	347, 422
Hpy188I	TCNGA	6 cut(s)	565, 583, 591, 694, 706, 831
Hpy188III	TCNNGA	5 cut(s)	41, 90, 545, 712, 747
Hpy8I	GTNNAC	2 cut(s)	347, 422
HpyAV	CCTTC	6 cut(s)	19, 42, 204, 225, 230, 652
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	6 cut(s)	98, 305, 365, 484, 554, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 734, 920
HpyF3I	CTNAG	3 cut(s)	17, 280, 858
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	3 cut(s)	323, 613, 869
HspAI	GCGC	2 cut(s)	760, 855
Kpn2I	TCCGGA	1 cut(s)	711
Kzo9I	GATC	3 cut(s)	28, 565, 796
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	72, 513
Lsp1109I	GCAGC	7 cut(s)	110, 181, 184, 203, 317, 377, 898
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	3 cut(s)	504, 522, 738
MaeII	ACGT	1 cut(s)	412
MalI	GATC	3 cut(s)	30, 567, 798
MboI	GATC	3 cut(s)	28, 565, 796
MboII	GAAGA	3 cut(s)	179, 447, 560
MfeI	CAATTG	1 cut(s)	928
MflI	RGATCY	3 cut(s)	28, 565, 796
MhlI	GDGCHC	2 cut(s)	217, 518
MluCI	AATT	7 cut(s)	44, 128, 134, 599, 732, 750, 928
MlyI	GAGTC	3 cut(s)	593, 638, 871
MmeI	TCCRAC	2 cut(s)	395, 836
MroI	TCCGGA	1 cut(s)	711
MslI	CAYNNNNRTG	3 cut(s)	300, 614, 686
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	2 cut(s)	250, 712
MspR9I	CCNGG	3 cut(s)	468, 794, 839
MunI	CAATTG	1 cut(s)	928
MvaI	CCWGG	3 cut(s)	468, 794, 839
MwoI	GCNNNNNNNGC	3 cut(s)	197, 734, 920
NdeII	GATC	3 cut(s)	28, 565, 796
NlaIII	CATG	3 cut(s)	323, 613, 869
NlaIV	GGNNCC	4 cut(s)	30, 248, 703, 798
PceI	AGGCCT	1 cut(s)	895
PciSI	GCTCTTC	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	404, 541
PflMI	CCANNNNNTGG	1 cut(s)	187
PinAI	ACCGGT	1 cut(s)	249
PkrI	GCNGC	7 cut(s)	100, 193, 196, 199, 307, 367, 913
PleI	GAGTC	3 cut(s)	592, 637, 870
PpsI	GAGTC	3 cut(s)	592, 637, 870
PpuMI	RGGWCCY	1 cut(s)	917
Psp124BI	GAGCTC	1 cut(s)	518
Psp5II	RGGWCCY	1 cut(s)	917
Psp6I	CCWGG	3 cut(s)	466, 792, 837
PspGI	CCWGG	3 cut(s)	466, 792, 837
PspN4I	GGNNCC	4 cut(s)	30, 248, 703, 798
PspPI	GGNCC	4 cut(s)	81, 470, 557, 917
PspPPI	RGGWCCY	1 cut(s)	917
PstI	CTGCAG	2 cut(s)	367, 916
PstNI	CAGNNNCTG	2 cut(s)	197, 920
PsuI	RGATCY	3 cut(s)	28, 565, 796
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	2 cut(s)	148, 646
RsaNI	GTAC	2 cut(s)	147, 645
RseI	CAYNNNNRTG	3 cut(s)	300, 614, 686
SacI	GAGCTC	1 cut(s)	518
SapI	GCTCTTC	1 cut(s)	162
SatI	GCNGC	7 cut(s)	99, 192, 195, 198, 306, 366, 912
Sau3AI	GATC	3 cut(s)	28, 565, 796
Sau96I	GGNCC	4 cut(s)	81, 470, 557, 917
SchI	GAGTC	3 cut(s)	593, 638, 871
ScrFI	CCNGG	3 cut(s)	468, 794, 839
SduI	GDGCHC	2 cut(s)	217, 518
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	3 cut(s)	363, 801, 912
SinI	GGWCC	2 cut(s)	557, 917
SmiMI	CAYNNNNRTG	3 cut(s)	300, 614, 686
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
SpeI	ACTAGT	1 cut(s)	521
Sse9I	AATT	7 cut(s)	44, 128, 134, 599, 732, 750, 928
SseBI	AGGCCT	1 cut(s)	895
SspMI	CTAG	3 cut(s)	504, 522, 738
SstI	GAGCTC	1 cut(s)	518
StuI	AGGCCT	1 cut(s)	895
StyD4I	CCNGG	3 cut(s)	466, 792, 837
StyI	CCWWGG	1 cut(s)	121
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	1 cut(s)	748
TasI	AATT	7 cut(s)	44, 128, 134, 599, 732, 750, 928
TatI	WGTACW	1 cut(s)	644
TfiI	GAWTC	2 cut(s)	404, 541
TseI	GCWGC	7 cut(s)	98, 191, 194, 197, 305, 365, 911
TspDTI	ATGAA	4 cut(s)	417, 420, 554, 632
Van91I	CCANNNNNTGG	1 cut(s)	187
VpaK11BI	GGWCC	2 cut(s)	557, 917
XapI	RAATTY	2 cut(s)	128, 599
XspI	CTAG	3 cut(s)	504, 522, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.