Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003452

Physical Location & Seq

Genomic Coordinates Forward (+)

5073605 .. 5079076

Gene Structure 5472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1045500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCCTGAGCTCGGTTTCACGTCTTCCATGGAGGTTTATCAGTTTTCTAGTCGCCATTACAACATCCAGTTGAGGTCTTCAAAACCCACAAGTAAAAAACACAGGTTTCAGCATTATGGCTCTGAGGGAAATGGCGCCAACCTCTGTGAATTGCAATTGTGGTCTCATAATTCTCAAGTTTTTGCTCATGGATGTAGTTTGCAGATGGGAACAATGAGACCCAGAAGCCGAAAACTCAAAGTTCTCTCCTTTGGGCATGGGAGTCAACTGGGAGGTTCAGTTTGCAGTAGACAGAGACATGGCGGAGTGCAATTAGGGTTGGATGAGGTGAATTCGACGAATTTGAGTTTCGTGGTGAGGTCGAGTTCAACATTGAGTGTAGGTAAAGTGATGGAGAGAGAGGGAGGTGGTGGGAAGAAAATTTATGATGCCATTGTTATAGGGTCAGGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

152

Amino Acids

16.51

Weight (kDa)

9.89

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06820 AT1G06820 AT1G06820 AT1G06820
fragaria_vesca	FvH4_6g21000 FvH4_6g21000 FvH4_6g21000
malus_domestica	MD12G1045500.v1.1 MD12G1045600.v1.1 MD14G1044400.v1.1
prunus_persica	Prupe.7G089400_v2.0.a1 Prupe.7G089400_v2.0.a1 Prupe.7G089400_v2.0.a1
pyrus_communis	pycom14g03760
rosa_chinensis	RchiOBHm_Chr3g0477381 RchiOBHm_Chr7g0212011
rosa_laevigata	RLG00000002945 RLG00000023727
rosa_multiflora	Rmu_sc0014812.1_g000005 Rmu_ssc0000341.1_g000031
rosa_roxburghii	Rroxscaffold_3G00247190 Rroxscaffold_6G00404240 Rroxscaffold_6G00404710
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159800
rosa_samantha	Rh3AG210300 Rh3AG210500 Rh3BG243700 Rh3DG237200 Rh3DG237300 Rh7AG263000 Rh7CG279600
rosa_wichuraiana	Rw0G000310 Rw0G000320 Rw7G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	289
AciI	CCGC	1 cut(s)	303
AcsI	RAATTY	3 cut(s)	331, 340, 420
AcyI	GRCGYC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	81, 369
AjiI	CACGTC	1 cut(s)	21
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	3 cut(s)	168, 211, 289
ApoI	RAATTY	3 cut(s)	331, 340, 420
AspLEI	GCGC	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	340, 367
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	12
BbsI	GAAGAC	2 cut(s)	15, 69
Bbv12I	GWGCWC	1 cut(s)	12
BccI	CCATC	2 cut(s)	199, 385
BcoDI	GTCTC	3 cut(s)	168, 211, 289
BfaI	CTAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	138
BmgBI	CACGTC	1 cut(s)	21
BmiI	GGNNCC	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	278
BpiI	GAAGAC	2 cut(s)	15, 69
Bpu10I	CCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	135
BsaI	GGTCTC	2 cut(s)	168, 211
BsaJI	CCNNGG	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse1I	ACTGG	2 cut(s)	67, 273
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	3 cut(s)	63, 197, 328
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	67, 273
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	3 cut(s)	168, 211, 289
Bso31I	GGTCTC	2 cut(s)	168, 211
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	134
BspTNI	GGTCTC	2 cut(s)	168, 211
BsrI	ACTGG	2 cut(s)	67, 273
BssECI	CCNNGG	1 cut(s)	27
BssNI	GRCGYC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	6, 123
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	63, 197, 328
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstMAI	GTCTC	3 cut(s)	168, 211, 289
BstV2I	GAAGAC	2 cut(s)	15, 69
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	63, 197, 328
CfoI	GCGC	1 cut(s)	137
CviAII	CATG	4 cut(s)	28, 188, 257, 299
CviJI	RGCY	3 cut(s)	10, 120, 228
CviKI_1	RGCY	3 cut(s)	10, 120, 228
DdeI	CTNAG	2 cut(s)	6, 123
DinI	GGCGCC	1 cut(s)	136
EciI	GGCGGA	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	12
Eco31I	GGTCTC	2 cut(s)	168, 211
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	12
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	4 cut(s)	31, 191, 260, 302
FaiI	YATR	8 cut(s)	29, 117, 168, 189, 258, 300, 426, 440
FatI	CATG	4 cut(s)	27, 187, 256, 298
FblI	GTMKAC	1 cut(s)	289
FokI	GGATG	3 cut(s)	50, 204, 335
FriOI	GRGCYC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	136
HaeII	RGCGCY	1 cut(s)	138
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	31, 191, 260, 302
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	266
HindII	GTYRAC	1 cut(s)	266
HinfI	GANTC	1 cut(s)	262
HphI	GGTGA	2 cut(s)	340, 367
Hpy166II	GTNNAC	2 cut(s)	266, 290
Hpy188I	TCNGA	1 cut(s)	124
Hpy8I	GTNNAC	2 cut(s)	266, 290
Hpy99I	CGWCG	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	4 cut(s)	154, 202, 285, 310
HpyF3I	CTNAG	2 cut(s)	6, 123
HpySE526I	ACGT	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	31, 191, 260, 302
HspAI	GCGC	1 cut(s)	135
KasI	GGCGCC	1 cut(s)	134
LpnPI	CCDG	6 cut(s)	18, 80, 88, 235, 254, 432
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	20
MboII	GAAGA	3 cut(s)	15, 69, 427
MfeI	CAATTG	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	7 cut(s)	149, 155, 169, 311, 331, 340, 420
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	9 cut(s)	25, 66, 118, 152, 266, 319, 351, 394, 398
MunI	CAATTG	1 cut(s)	155
NarI	GGCGCC	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	27
NlaIII	CATG	4 cut(s)	31, 191, 260, 302
NlaIV	GGNNCC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	270
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	12
SfaNI	GCATC	1 cut(s)	418
SfoI	GGCGCC	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	7 cut(s)	149, 155, 169, 311, 331, 340, 420
SsiI	CCGC	1 cut(s)	303
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	48
SstI	GAGCTC	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	27
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	335, 362
TasI	AATT	7 cut(s)	149, 155, 169, 311, 331, 340, 420
XapI	RAATTY	3 cut(s)	331, 340, 420
XmiI	GTMKAC	1 cut(s)	289
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.