Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003452

Physical Location & Seq

Genomic Coordinates Forward (+)

40561007 .. 40561556

Gene Structure 550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCAAGAATCTCAGTGTCTCATCACTCACCCTAGTCCTCTGATTTCCAGTTATAAAGTTTCTTCTTCAGGGTTTTACACTCTGATCGAGGACCAGAGTTTCAATAAAGTAGTGGAGAGTGATGGAAGAGCAGGTGGGAAGGATTACTATGATGGCATTGTTATAGGGTCAGGAATTGAAGGGTTGGTTGCAGCCACACAGTTGGCTGTGAAGGGTGCCAAGGTTTTGGTTTTAGAGAAGCATGTGGTTCGGGGTGGGAGCTCTGGCTATTATGAGAGGGATGGTTATACATTCAATGTCGGGTCTTCTGTCATGATTGGTCTCGGCGATAAGGGCAATCTAAATTTGATAACCCAAGCATTGGCAGTAGTGGGTTGTGACATGCAGGTGATACCTGATCCCACTACTGTTCATTACCATCTACCCAATAATCTTTCTGTTCGAGTGCACAGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

152

Amino Acids

16.3

Weight (kDa)

5.92

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_2	PF00890	51 - 88	9.6e-06	FAD binding domain
NAD_binding_8	PF13450	54 - 115	3e-12	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	61 - 139	1.1e-06	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06820 AT1G06820 AT1G06820 AT1G06820
fragaria_vesca	FvH4_6g21000 FvH4_6g21000 FvH4_6g21000
malus_domestica	MD12G1045500.v1.1 MD12G1045600.v1.1 MD14G1044400.v1.1
prunus_persica	Prupe.7G089400_v2.0.a1 Prupe.7G089400_v2.0.a1 Prupe.7G089400_v2.0.a1
pyrus_communis	pycom14g03760
rosa_chinensis	RchiOBHm_Chr3g0477381 RchiOBHm_Chr7g0212011
rosa_laevigata	RLG00000002945 RLG00000023727
rosa_multiflora	Rmu_sc0014812.1_g000005 Rmu_ssc0000341.1_g000031
rosa_roxburghii	Rroxscaffold_3G00247190 Rroxscaffold_6G00404240 Rroxscaffold_6G00404710
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159800
rosa_samantha	Rh3AG210300 Rh3AG210500 Rh3BG243700 Rh3DG237200 Rh3DG237300 Rh7AG263000 Rh7CG279600
rosa_wichuraiana	Rw0G000310 Rw0G000320 Rw7G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AarI	CACCTGC	2 cut(s)	122, 376
Acc36I	ACCTGC	2 cut(s)	122, 376
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	361
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	103, 179, 295
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw21I	GWGCWC	2 cut(s)	263, 450
Alw26I	GTCTC	2 cut(s)	23, 326
Alw44I	GTGCAC	1 cut(s)	446
AlwI	GGATC	1 cut(s)	392
ApaLI	GTGCAC	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	20, 400
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	450
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	2 cut(s)	263, 450
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	4 cut(s)	116, 146, 275, 426
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BcoDI	GTCTC	2 cut(s)	23, 326
BfaI	CTAG	1 cut(s)	33
BfuAI	ACCTGC	2 cut(s)	122, 376
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	450
BseXI	GCAGC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	215
BsiHKAI	GWGCWC	2 cut(s)	263, 450
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	2 cut(s)	23, 326
Bso31I	GGTCTC	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	263, 450
Bsp143I	GATC	2 cut(s)	84, 397
BspCNI	CTCAG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	217
BspMI	ACCTGC	2 cut(s)	122, 376
BspPI	GGATC	1 cut(s)	392
BspQI	GCTCTTC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	84, 397
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	201, 409
Bst6I	CTCTTC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	2 cut(s)	87, 400
BstMAI	GTCTC	2 cut(s)	23, 326
BstMBI	GATC	2 cut(s)	84, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstNSI	RCATGY	2 cut(s)	245, 385
BstSLI	GKGCMC	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	297
BstXI	CCANNNNNNTGG	2 cut(s)	202, 226
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	20
BveI	ACCTGC	2 cut(s)	122, 376
CciI	TCATGA	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	91
CviAII	CATG	3 cut(s)	242, 313, 382
CviJI	RGCY	4 cut(s)	194, 206, 261, 267
CviKI_1	RGCY	4 cut(s)	194, 206, 261, 267
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	2 cut(s)	86, 399
DpnII	GATC	2 cut(s)	84, 397
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	3 cut(s)	245, 316, 385
FaiI	YATR	8 cut(s)	54, 150, 164, 243, 273, 288, 314, 383
FatI	CATG	3 cut(s)	241, 312, 381
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	245, 316, 385
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	2 cut(s)	20, 400
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	2 cut(s)	42, 84
Hpy188III	TCNNGA	2 cut(s)	171, 313
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	3 cut(s)	133, 173, 205
HpyCH4III	ACNGT	2 cut(s)	201, 409
HpyCH4V	TGCA	4 cut(s)	4, 191, 385, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	245, 316, 385
Kzo9I	GATC	2 cut(s)	84, 397
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	8 cut(s)	54, 61, 107, 117, 156, 249, 371, 408
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	86, 399
MboI	GATC	2 cut(s)	84, 397
MboII	GAAGA	4 cut(s)	54, 57, 138, 297
MhlI	GDGCHC	2 cut(s)	263, 450
MluCI	AATT	2 cut(s)	174, 343
MnlI	CCTC	3 cut(s)	48, 82, 270
MslI	CAYNNNNRTG	1 cut(s)	386
MwoI	GCNNNNNNNGC	1 cut(s)	333
NdeII	GATC	2 cut(s)	84, 397
NlaIII	CATG	3 cut(s)	245, 316, 385
NlaIV	GGNNCC	1 cut(s)	217
NmeAIII	GCCGAG	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	2 cut(s)	245, 385
PagI	TCATGA	1 cut(s)	312
PaqCI	CACCTGC	2 cut(s)	122, 376
PciSI	GCTCTTC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	193
PsiI	TTATAA	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	121
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	84, 397
Sau96I	GGNCC	1 cut(s)	91
SduI	GDGCHC	2 cut(s)	263, 450
SetI	ASST	5 cut(s)	136, 225, 263, 390, 397
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	174, 343
SspMI	CTAG	1 cut(s)	33
SstI	GAGCTC	1 cut(s)	263
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	201, 409
TaqI	TCGA	2 cut(s)	87, 442
TasI	AATT	2 cut(s)	174, 343
TfiI	GAWTC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	20
Van91I	CCANNNNNTGG	1 cut(s)	361
VneI	GTGCAC	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	343
XceI	RCATGY	2 cut(s)	245, 385
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.