Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003452

Physical Location & Seq

Genomic Coordinates Forward (+)

13252282 .. 13252671

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0159800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCCGACGCTGTTCCTACACCAATGTCATTTAAAGAGCAACACTCGGTGATTAACCCGGCGGCCGAGGATGAGGATATTGTAGTTGTCAAGCTCTACCTTGAGAACAAATACAAGACTCGAGTCATGGGTTGGCAAGCCAAATCCGAGTTCGCGTGTCACTTGATAGTAGTTCCTTCGATAAATGGACTGAACTTGGCTGCTAGTTCTGAGACTGCACAACCGTGCAACAACATAGATCATCGTCTTTCTTTCCCTAAACCTTTGAAGGTCTATTTCTTTTTCTTGATTTTCTTTCTGACTCCAATTTCAGAAGAATGTCATTTGAAGCATTATTTGAAGGTTGCATTTTTGACGGCTTCAATGATATGGTTATTGCGTATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

129

Amino Acids

14.78

Weight (kDa)

6.95

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06820 AT1G06820 AT1G06820 AT1G06820
fragaria_vesca	FvH4_6g21000 FvH4_6g21000 FvH4_6g21000
malus_domestica	MD12G1045500.v1.1 MD12G1045600.v1.1 MD14G1044400.v1.1
prunus_persica	Prupe.7G089400_v2.0.a1 Prupe.7G089400_v2.0.a1 Prupe.7G089400_v2.0.a1
pyrus_communis	pycom14g03760
rosa_chinensis	RchiOBHm_Chr3g0477381 RchiOBHm_Chr7g0212011
rosa_laevigata	RLG00000002945 RLG00000023727
rosa_multiflora	Rmu_sc0014812.1_g000005 Rmu_ssc0000341.1_g000031
rosa_roxburghii	Rroxscaffold_3G00247190 Rroxscaffold_6G00404240 Rroxscaffold_6G00404710
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159800
rosa_samantha	Rh3AG210300 Rh3AG210500 Rh3BG243700 Rh3DG237200 Rh3DG237300 Rh7AG263000 Rh7CG279600
rosa_wichuraiana	Rw0G000310 Rw0G000320 Rw7G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	155
AciI	CCGC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	49
AgsI	TTSAA	4 cut(s)	268, 328, 340, 363
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AleI	CACNNNNGTG	1 cut(s)	223
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	204
BisI	GCNGC	2 cut(s)	63, 201
BlsI	GCNGC	2 cut(s)	64, 202
Bme1390I	CCNGG	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	59
BoxI	GACNNNNGTC	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	201
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	238
BstMCI	CGRYCG	1 cut(s)	66
BstPAI	GACNNNNGTC	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	57
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	187
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	138
CseI	GACGC	1 cut(s)	17
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	5 cut(s)	65, 94, 140, 200, 359
CviKI_1	RGCY	5 cut(s)	65, 94, 140, 200, 359
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DraI	TTTAAA	1 cut(s)	34
DraIII	CACNNNGTG	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	63
Eco52I	CGGCCG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	120
FaeI	CATG	1 cut(s)	130
FaiI	YATR	4 cut(s)	128, 236, 370, 383
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	63, 201
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	63, 201
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	2 cut(s)	63, 201
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	130
HinfI	GANTC	3 cut(s)	118, 123, 301
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	5 cut(s)	7, 148, 211, 300, 313
Hpy188III	TCNNGA	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	186, 262, 334
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	218, 228, 347
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	1 cut(s)	72
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	1 cut(s)	326
MluCI	AATT	1 cut(s)	306
MlyI	GAGTC	3 cut(s)	112, 132, 295
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	2 cut(s)	61, 67
MseI	TTAA	2 cut(s)	33, 54
MslI	CAYNNNNRTG	1 cut(s)	223
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	155
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	130
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	158
OliI	CACNNNNGTG	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	64, 202
PleI	GAGTC	3 cut(s)	112, 131, 295
PpsI	GAGTC	3 cut(s)	112, 131, 295
PshAI	GACNNNNGTC	1 cut(s)	122
PspXI	VCTCGAGB	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	33, 54
SatI	GCNGC	2 cut(s)	63, 201
Sau3AI	GATC	1 cut(s)	238
SchI	GAGTC	3 cut(s)	112, 132, 295
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	5 cut(s)	96, 102, 265, 273, 345
Sfr274I	CTCGAG	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	223
SmlI	CTYRAG	2 cut(s)	101, 120
SmoI	CTYRAG	2 cut(s)	101, 120
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	121, 179
TasI	AATT	1 cut(s)	306
TauI	GCSGC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	33, 54
Tru9I	TTAA	2 cut(s)	33, 54
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	158
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.