Rh3AG210500

Prolycopene isomerase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
21124627 .. 21134338
9712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG210500.1

Sequence Viewer

Length: 1680 bp
ATGCACTTTCCCCACTTGCTAAGCTTCACTTCCACACCTGCCATGCACCTTTCTCAGTTTCCCAGTCACCACAGCCAGTTATCTGGCCATGTTCAGAGTCCCCACTTGGGTAAAACCAGACCCAGAAGTCAACAACCTCCGATTTCCACTTTAGGATGTTGCAATGTTAAAGACTACTTTCAGACTCAAACACCCAGAAGGAAATTGAATCAAGGAAGTGGGTTGAGATATTCGAATTCGAAAAATTGGAGCTTTGCAGTGAGGTCCAGTTCAACATTGAGCGTAGATAAAGTGTTGGAGAGTGATGGAAAGGCAGGTGGGAAGAGTAAATATGATGCTATTGTTATAGGGTCAGGGATTGGAGGGTTGGTTGCAGCTACACAGTTGGCTGTGAAGGGTGCCAAGGTTTTGGTTTTGGAGAAGTATGTGATTCCTGGTGGGAGTTCTGGGTACTATGAGAGGGATGGTTATACTTTCGATGTTGGGTCTTCTGTCATGTTCGGTTTCAGCGATAAGGGCAATCTAAACTTGATAACACAAGCATTGGCAGCAGTGGGTTGTGAGATGCAGGTGATACCTGATCCAACTACTGTCCATTATCATCTACCGGATAATCTTTCTGTTCGAGTACACAGAGAATACAGTGAATTTATTTCAGAACTTACTGCTAAATTTCCCCATGAAAAGAATGGGATCGTAAAATTCTTCGGTGAATGTTGGAAGGTTTTCAATGCCTTGAACTCTTTGGAACTGAAGTCACTTGAGGAGCCTATCTATCTTTTTGGACAGTTCTTTCAGAAGCCTCTTGAATGCTTGACACTAGCCTATTATTTGCCTCAAAATGCTGGGGACATAGCTCGTAGGTACATTCAGGATCCCCAACTGTTGTCTTTCATTGATGCGGAGTGTTTTATTGTGAGCACAGTCAAGGCTTTGCAGACACCGATGATCAATGCGAGCATGGTGATGTGTGACAGGCATTATGGTGGAATTAACTACCCTGTTGGTGGCGTTGGGGGAATTGCAAAGTCCTTGGCGAAAGGTCTGGTGGAGCTGGGCAGTGAGATACTTTACAAGGCCAATGTTACTGGCATCATACTTGATCAGGGTAGAGCTGTTGGAGTAAGGCTTTCAGACAAGAGGGAATTTTTTGCCAAAACCATAATATCAAATGCTACAAGATGGGATACCTTTGGAAAGCTGTTAAAAGAAGAAGACCTTCCAAAAGAAGAGGAAAACTTTCAGAAACTTTATGTTAAGGCACCATCTTTTCTTTCCATACACATGGGGGTGAAATCTGATGTTCTGCCACCAGATACAGATTGCCACCATTTTGTGCTTGAGGATGATTGGGCAAGGTTAGAGGAGCCATATGGAAGTATATTTTTAAGCATTCCAACTATTCTTGATCCATCGTTATGCCCAGAAGGGCGGCATATTCTTCACATATTTACAACCTCTTCCATTGAGGACTGGGAGGGACTCTCTCGAAAGGACTATGAAGCAAAGAAGGAGCGTGTGGCAGATGAAATCATTAGCAGATTAGAGAAAAAACTATTTCCAGGGCTCAAGTCATCCATCGTTTTTAAGGAGGTAATGCAGTACCCTAGCACTACTAAGAAAATCGAAGCCGTTCAGATACATGACAATAGGGTGAAGGTTGTGACTGTTGTAACATAA
Functional Annotation

Protein Analysis

559

Amino Acids

62.25

Weight (kDa)

7.63

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 112 - 150 7.1e-06 FAD dependent oxidoreductase
NAD_binding_8 PF13450 115 - 176 1.6e-13 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 120 - 500 1.8e-18 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 46, 305, 559
AasI GACNNNNNNGTC 1 cut(s) 126
Acc36I ACCTGC 3 cut(s) 46, 305, 559
AccB1I GGYRCC 2 cut(s) 398, 1261
AciI CCGC 2 cut(s) 902, 1432
AclWI GGATC 5 cut(s) 575, 701, 869, 882, 1403
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 5 cut(s) 235, 647, 671, 701, 1145
AcuI CTGAAG 1 cut(s) 773
AfaI GTAC 4 cut(s) 452, 630, 866, 1604
AfiI CCNNNNNNNGG 2 cut(s) 107, 1007
AgsI TTSAA 5 cut(s) 208, 273, 730, 739, 809
AjnI CCWGG 2 cut(s) 433, 1561
AluBI AGCT 7 cut(s) 24, 252, 377, 857, 1054, 1115, 1201
AluI AGCT 7 cut(s) 24, 252, 377, 857, 1054, 1115, 1201
Alw21I GWGCWC 1 cut(s) 923
AlwI GGATC 5 cut(s) 575, 701, 869, 882, 1403
AoxI GGCC 2 cut(s) 85, 1077
ApeKI GCWGC 2 cut(s) 374, 548
ApoI RAATTY 5 cut(s) 235, 647, 671, 701, 1145
Asp700I GAANNNNTTC 4 cut(s) 725, 1218, 1239, 1632
AspS9I GGNCC 1 cut(s) 264
AsuHPI GGTGA 6 cut(s) 59, 583, 722, 976, 1303, 1666
AsuII TTCGAA 2 cut(s) 233, 239
AvaII GGWCC 1 cut(s) 264
BalI TGGCCA 1 cut(s) 87
BamHI GGATCC 1 cut(s) 874
BanI GGYRCC 2 cut(s) 398, 1261
BanII GRGCYC 1 cut(s) 1569
BbsI GAAGAC 2 cut(s) 480, 1221
Bbv12I GWGCWC 1 cut(s) 923
BbvI GCAGC 2 cut(s) 386, 560
BccI CCATC 6 cut(s) 299, 458, 1176, 1273, 1420, 1586
BceAI ACGGC 1 cut(s) 1616
BciT130I CCWGG 2 cut(s) 435, 1563
BciVI GTATCC 1 cut(s) 1180
BclI TGATCA 2 cut(s) 948, 1102
BfaI CTAG 2 cut(s) 821, 1608
BfuAI ACCTGC 3 cut(s) 46, 305, 559
BfuI GTATCC 1 cut(s) 1180
BisI GCNGC 3 cut(s) 375, 549, 1433
BlpI GCTNAGC 1 cut(s) 20
BlsI GCNGC 3 cut(s) 376, 550, 1434
Bme1390I CCNGG 2 cut(s) 435, 1563
Bme18I GGWCC 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 5 cut(s) 400, 768, 876, 1263, 1368
BmrFI CCNGG 2 cut(s) 435, 1563
BmrI ACTGGG 2 cut(s) 57, 1483
BmsI GCATC 4 cut(s) 325, 555, 889, 1101
BmuI ACTGGG 2 cut(s) 57, 1483
BpiI GAAGAC 2 cut(s) 480, 1221
BplI GAGNNNNNCTC 2 cut(s) 1469, 1501
Bpu1102I GCTNAGC 1 cut(s) 20
Bpu14I TTCGAA 2 cut(s) 233, 239
BpuEI CTTGAG 3 cut(s) 782, 1361, 1553
BsaJI CCNNGG 3 cut(s) 402, 1032, 1562
BsaWI WCCGGW 1 cut(s) 607
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 1007
Bse1I ACTGG 5 cut(s) 63, 76, 267, 1093, 1478
Bse3DI GCAATG 1 cut(s) 169
BseBI CCWGG 2 cut(s) 435, 1563
BseDI CCNNGG 3 cut(s) 402, 1032, 1562
BseGI GGATG 4 cut(s) 161, 469, 1351, 1574
BseLI CCNNNNNNNGG 2 cut(s) 107, 1007
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 5 cut(s) 63, 76, 267, 1093, 1478
BseRI GAGGAG 2 cut(s) 779, 1379
BseXI GCAGC 2 cut(s) 386, 560
BseYI CCCAGC 2 cut(s) 845, 1054
BshFI GGCC 2 cut(s) 87, 1079
BshNI GGYRCC 2 cut(s) 398, 1261
BsiHKAI GWGCWC 1 cut(s) 923
BsiSI CCGG 1 cut(s) 608
BslFI GGGAC 3 cut(s) 84, 863, 1494
BslI CCNNNNNNNGG 2 cut(s) 107, 1007
BsmFI GGGAC 3 cut(s) 84, 863, 1494
BsmI GAATGC 2 cut(s) 815, 1392
BsnI GGCC 2 cut(s) 87, 1079
Bsp119I TTCGAA 2 cut(s) 233, 239
Bsp1286I GDGCHC 2 cut(s) 923, 1569
Bsp143I GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
Bsp1720I GCTNAGC 1 cut(s) 20
BspACI CCGC 2 cut(s) 902, 1432
BspANI GGCC 2 cut(s) 87, 1079
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 5 cut(s) 400, 768, 876, 1263, 1368
BspMI ACCTGC 3 cut(s) 46, 305, 559
BspPI GGATC 5 cut(s) 575, 701, 869, 882, 1403
BspT104I TTCGAA 2 cut(s) 233, 239
BspT107I GGYRCC 2 cut(s) 398, 1261
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 5 cut(s) 63, 76, 267, 1093, 1478
BssECI CCNNGG 3 cut(s) 402, 1032, 1562
BssMI GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
BssT1I CCWWGG 2 cut(s) 402, 1032
Bst2UI CCWGG 2 cut(s) 435, 1563
Bst4CI ACNGT 7 cut(s) 384, 592, 644, 789, 885, 925, 1669
Bst6I CTCTTC 3 cut(s) 317, 1224, 1465
BstBI TTCGAA 2 cut(s) 233, 239
BstC8I GCNNGC 1 cut(s) 958
BstDEI CTNAG 3 cut(s) 20, 54, 1617
BstF5I GGATG 4 cut(s) 161, 469, 1351, 1574
BstKTI GATC 6 cut(s) 583, 696, 877, 951, 1105, 1411
BstMBI GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
BstMWI GCNNNNNNNGC 2 cut(s) 516, 548
BstNI CCWGG 2 cut(s) 435, 1563
BstSCI CCNGG 2 cut(s) 433, 1561
BstV1I GCAGC 2 cut(s) 386, 560
BstV2I GAAGAC 2 cut(s) 480, 1221
BstX2I RGATCY 1 cut(s) 874
BstXI CCANNNNNNTGG 3 cut(s) 83, 409, 1285
BstYI RGATCY 1 cut(s) 874
BsuI GTATCC 1 cut(s) 1180
BsuRI GGCC 2 cut(s) 87, 1079
BtsCI GGATG 4 cut(s) 161, 469, 1351, 1574
BtsI GCAGTG 3 cut(s) 264, 558, 1066
BtsIMutI CAGTG 4 cut(s) 264, 558, 649, 1066
BveI ACCTGC 3 cut(s) 46, 305, 559
Cac8I GCNNGC 1 cut(s) 958
Cfr13I GGNCC 1 cut(s) 264
Csp6I GTAC 4 cut(s) 451, 629, 865, 1603
CviAII CATG 7 cut(s) 43, 89, 496, 680, 961, 1285, 1643
CviQI GTAC 4 cut(s) 451, 629, 865, 1603
DdeI CTNAG 3 cut(s) 20, 54, 1617
DpnI GATC 6 cut(s) 582, 695, 876, 950, 1104, 1410
DpnII GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
DrdI GACNNNNNNGTC 1 cut(s) 126
DseDI GACNNNNNNGTC 1 cut(s) 126
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 3 cut(s) 317, 1224, 1465
EarI CTCTTC 3 cut(s) 317, 1224, 1465
Eco130I CCWWGG 2 cut(s) 402, 1032
Eco24I GRGCYC 1 cut(s) 1569
Eco47I GGWCC 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 773
EcoRI GAATTC 1 cut(s) 235
EcoRII CCWGG 2 cut(s) 433, 1561
EcoT14I CCWWGG 2 cut(s) 402, 1032
EcoT38I GRGCYC 1 cut(s) 1569
ErhI CCWWGG 2 cut(s) 402, 1032
FaeI CATG 7 cut(s) 46, 92, 499, 683, 964, 1288, 1646
FalI AAGNNNNNCTT 4 cut(s) 13, 45, 1203, 1235
FaqI GGGAC 3 cut(s) 84, 863, 1494
FatI CATG 7 cut(s) 42, 88, 495, 679, 960, 1284, 1642
FauNDI CATATG 1 cut(s) 1372
FbaI TGATCA 2 cut(s) 948, 1102
Fnu4HI GCNGC 3 cut(s) 375, 549, 1433
FokI GGATG 4 cut(s) 168, 476, 1358, 1561
FriOI GRGCYC 1 cut(s) 1569
Fsp4HI GCNGC 3 cut(s) 375, 549, 1433
FspBI CTAG 2 cut(s) 821, 1608
GluI GCNGC 3 cut(s) 375, 549, 1433
GsaI CCCAGC 2 cut(s) 849, 1058
HaeIII GGCC 2 cut(s) 87, 1079
HapII CCGG 1 cut(s) 608
Hin1II CATG 7 cut(s) 46, 92, 499, 683, 964, 1288, 1646
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HindIII AAGCTT 1 cut(s) 22
HinfI GANTC 5 cut(s) 97, 184, 208, 430, 1482
HpaII CCGG 1 cut(s) 608
HphI GGTGA 6 cut(s) 59, 583, 722, 976, 1303, 1666
Hpy166II GTNNAC 2 cut(s) 131, 631
Hpy188I TCNGA 9 cut(s) 96, 141, 183, 658, 798, 1135, 1245, 1300, 1638
Hpy188III TCNNGA 4 cut(s) 806, 872, 1406, 1488
Hpy8I GTNNAC 2 cut(s) 131, 631
HpyAV CCTTC 7 cut(s) 192, 388, 715, 1229, 1421, 1504, 1651
HpyCH4III ACNGT 7 cut(s) 384, 592, 644, 789, 885, 925, 1669
HpyCH4V TGCA 9 cut(s) 4, 46, 162, 257, 374, 568, 937, 1025, 1600
HpyF10VI GCNNNNNNNGC 2 cut(s) 516, 548
HpyF3I CTNAG 3 cut(s) 20, 54, 1617
Hsp92II CATG 7 cut(s) 46, 92, 499, 683, 964, 1288, 1646
Ksp22I TGATCA 2 cut(s) 948, 1102
Kzo9I GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
LmnI GCTCC 5 cut(s) 249, 766, 1051, 1366, 1513
Lsp1109I GCAGC 2 cut(s) 386, 560
LweI GCATC 4 cut(s) 325, 555, 889, 1101
MaeI CTAG 2 cut(s) 821, 1608
MaeIII GTNAC 6 cut(s) 65, 756, 971, 1084, 1663, 1672
MalI GATC 6 cut(s) 582, 695, 876, 950, 1104, 1410
MboI GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
MboII GAAGA 8 cut(s) 334, 480, 697, 1223, 1226, 1241, 1433, 1452
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 2 cut(s) 923, 1569
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 9 cut(s) 203, 235, 244, 647, 671, 701, 990, 1020, 1145
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 3 cut(s) 106, 178, 1476
MmeI TCCRAC 5 cut(s) 276, 608, 698, 1099, 1421
Mox20I TGGCCA 1 cut(s) 87
MroXI GAANNNNTTC 4 cut(s) 725, 1218, 1239, 1632
MscI TGGCCA 1 cut(s) 87
MseI TTAA 6 cut(s) 168, 993, 1205, 1257, 1388, 1587
MslI CAYNNNNRTG 5 cut(s) 965, 984, 1283, 1289, 1417
Msp20I TGGCCA 1 cut(s) 87
MspI CCGG 1 cut(s) 608
MspR9I CCNGG 2 cut(s) 435, 1563
Mva1269I GAATGC 2 cut(s) 815, 1392
MvaI CCWGG 2 cut(s) 435, 1563
MwoI GCNNNNNNNGC 2 cut(s) 516, 548
NdeI CATATG 1 cut(s) 1372
NdeII GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
NlaIII CATG 7 cut(s) 46, 92, 499, 683, 964, 1288, 1646
NlaIV GGNNCC 5 cut(s) 400, 768, 876, 1263, 1368
NmuCI GTSAC 4 cut(s) 65, 756, 971, 1663
NspV TTCGAA 2 cut(s) 233, 239
PaqCI CACCTGC 3 cut(s) 46, 305, 559
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PctI GAATGC 2 cut(s) 815, 1392
PdmI GAANNNNTTC 4 cut(s) 725, 1218, 1239, 1632
PfeI GAWTC 2 cut(s) 208, 430
PkrI GCNGC 3 cut(s) 376, 550, 1434
PleI GAGTC 3 cut(s) 105, 178, 1476
PpsI GAGTC 3 cut(s) 105, 178, 1476
Psp6I CCWGG 2 cut(s) 433, 1561
PspFI CCCAGC 2 cut(s) 845, 1054
PspGI CCWGG 2 cut(s) 433, 1561
PspN4I GGNNCC 5 cut(s) 400, 768, 876, 1263, 1368
PspPI GGNCC 1 cut(s) 264
PsuI RGATCY 1 cut(s) 874
RsaI GTAC 4 cut(s) 452, 630, 866, 1604
RsaNI GTAC 4 cut(s) 451, 629, 865, 1603
RseI CAYNNNNRTG 5 cut(s) 965, 984, 1283, 1289, 1417
SaqAI TTAA 6 cut(s) 168, 993, 1205, 1257, 1388, 1587
SatI GCNGC 3 cut(s) 375, 549, 1433
Sau3AI GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
Sau96I GGNCC 1 cut(s) 264
SchI GAGTC 3 cut(s) 106, 178, 1476
ScrFI CCNGG 2 cut(s) 435, 1563
SduI GDGCHC 2 cut(s) 923, 1569
SfaNI GCATC 4 cut(s) 325, 555, 889, 1101
SfuI TTCGAA 2 cut(s) 233, 239
SinI GGWCC 1 cut(s) 264
SmiMI CAYNNNNRTG 5 cut(s) 965, 984, 1283, 1289, 1417
SmlI CTYRAG 3 cut(s) 761, 1340, 1568
SmoI CTYRAG 3 cut(s) 761, 1340, 1568
Sse9I AATT 9 cut(s) 203, 235, 244, 647, 671, 701, 990, 1020, 1145
SsiI CCGC 2 cut(s) 902, 1432
SspMI CTAG 2 cut(s) 821, 1608
StyD4I CCNGG 2 cut(s) 433, 1561
StyI CCWWGG 2 cut(s) 402, 1032
TaaI ACNGT 7 cut(s) 384, 592, 644, 789, 885, 925, 1669
TaqI TCGA 6 cut(s) 233, 239, 477, 625, 1489, 1626
TasI AATT 9 cut(s) 203, 235, 244, 647, 671, 701, 990, 1020, 1145
TatI WGTACW 1 cut(s) 628
TauI GCSGC 1 cut(s) 1435
TfiI GAWTC 2 cut(s) 208, 430
Tru1I TTAA 6 cut(s) 168, 993, 1205, 1257, 1388, 1587
Tru9I TTAA 6 cut(s) 168, 993, 1205, 1257, 1388, 1587
TscAI CASTG 4 cut(s) 264, 558, 649, 1066
TseFI GTSAC 4 cut(s) 65, 756, 971, 1663
TseI GCWGC 2 cut(s) 374, 548
Tsp45I GTSAC 4 cut(s) 65, 756, 971, 1663
TspDTI ATGAA 4 cut(s) 696, 883, 1515, 1542
TspRI CASTG 4 cut(s) 264, 558, 649, 1066
VpaK11BI GGWCC 1 cut(s) 264
XapI RAATTY 5 cut(s) 235, 647, 671, 701, 1145
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XmnI GAANNNNTTC 4 cut(s) 725, 1218, 1239, 1632
XspI CTAG 2 cut(s) 821, 1608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.