Rh3AG210300

Prolycopene isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003452
Physical Location & Seq
Forward (+)
21112989 .. 21120435
7447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG210300.1

Sequence Viewer

Length: 663 bp
ATGGCTAAAATATCTTCCGCTTTATACGATTATCAATCAAATAAAAAGTTATTTTATGTCGCAGTCCTTACATCCCCTACCACAGGTGGGGTGACGGCTAGTTTTGGAATTAGAGGGTTGGTTGCAGCCACACAGTTGGCTGTGAGTGGTGCCAAGGTTTTGGTTTTAGAGAAGCATGTGGTTCCTGGTGGGAGCTCTGGCTATTATGAGAGGGATGGTTATACATTCGATGTCGAGTCTCCTGTCCTGATTGGTCTTGGCGATAAGGGCAATCTAAATTTGATAACCCAAGCATTGGCAGCAGTGGGTTGTGAGATTCTCAATGTAGGTAGGGGAAAGCTGTTAAAAGAAGACGACCTTCCTAAAGAAGAGGAAAGATTTCAGAGAGTTTATGTTAAGTCTCCATCTTTTTTTTCCATTCACAAGGGTGTCAAATCTGAGGCTCTACCTTCAGATACAGATTGCCACCACTTTGTGCTTAAGGACGATTGGACAAGGTTGGACGAGCCATATGGAAGTTTATTCATAAGTATTCCAACTGTTCTGGATTCATCGTTGGCTCCAGAAGGGCACCATATTCTTCACATATTTACGACCTCATCCTTTGAAGACTGGGAGGTGGGAACGCCTAAGACACACAGGCGATACATGGCTCATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
Amino_oxidase

Protein Analysis

220

Amino Acids

24.18

Weight (kDa)

5.98

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_8 PF13450 36 - 92 6e-09 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 149, 570
AccB7I CCANNNNNTGG 1 cut(s) 295
AciI CCGC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 435
AdeI CACNNNGTG 1 cut(s) 475
AfiI CCNNNNNNNGG 3 cut(s) 83, 87, 295
AflII CTTAAG 1 cut(s) 479
AgsI TTSAA 1 cut(s) 608
AjnI CCWGG 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 426
AluBI AGCT 2 cut(s) 195, 340
AluI AGCT 2 cut(s) 195, 340
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 2 cut(s) 243, 405
ApeKI GCWGC 2 cut(s) 125, 299
ApoI RAATTY 1 cut(s) 277
Asp700I GAANNNNTTC 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 103
BaeGI GKGCMC 1 cut(s) 573
BanI GGYRCC 2 cut(s) 149, 570
BanII GRGCYC 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 357, 615
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 137, 311
BccI CCATC 2 cut(s) 209, 412
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 243, 405
BfaI CTAG 1 cut(s) 99
BfrI CTTAAG 1 cut(s) 479
BisI GCNGC 2 cut(s) 126, 300
BlsI GCNGC 2 cut(s) 127, 301
Bme1390I CCNGG 1 cut(s) 186
BmiI GGNNCC 4 cut(s) 151, 183, 561, 572
BmrFI CCNGG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 622
BmuI ACTGGG 1 cut(s) 622
BpiI GAAGAC 2 cut(s) 357, 615
BpmI CTGGAG 1 cut(s) 546
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 87, 295
Bse1I ACTGG 1 cut(s) 617
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 3 cut(s) 71, 220, 599
BseLI CCNNNNNNNGG 3 cut(s) 83, 87, 295
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 1 cut(s) 617
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 2 cut(s) 137, 311
BshNI GGYRCC 2 cut(s) 149, 570
BsiHKAI GWGCWC 1 cut(s) 197
BslI CCNNNNNNNGG 3 cut(s) 83, 87, 295
BsmAI GTCTC 2 cut(s) 243, 405
Bsp1286I GDGCHC 2 cut(s) 197, 573
BspACI CCGC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 430
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 4 cut(s) 151, 183, 561, 572
BspT107I GGYRCC 2 cut(s) 149, 570
BspTI CTTAAG 1 cut(s) 479
BsrI ACTGG 1 cut(s) 617
BssECI CCNNGG 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 135, 541
Bst6I CTCTTC 1 cut(s) 363
BstAFI CTTAAG 1 cut(s) 479
BstDEI CTNAG 2 cut(s) 438, 630
BstENI CCTNNNNNAGG 1 cut(s) 81
BstF5I GGATG 3 cut(s) 71, 220, 599
BstMAI GTCTC 2 cut(s) 243, 405
BstMWI GCNNNNNNNGC 2 cut(s) 267, 299
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 573
BstV1I GCAGC 2 cut(s) 137, 311
BstV2I GAAGAC 2 cut(s) 357, 615
BstXI CCANNNNNNTGG 2 cut(s) 136, 160
BtsCI GGATG 3 cut(s) 71, 220, 599
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
CciI TCATGA 1 cut(s) 655
CviAII CATG 3 cut(s) 176, 649, 656
DdeI CTNAG 2 cut(s) 438, 630
DraIII CACNNNGTG 1 cut(s) 475
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 435
EcoICRI GAGCTC 1 cut(s) 195
EcoNI CCTNNNNNAGG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 3 cut(s) 179, 652, 659
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 3 cut(s) 175, 648, 655
FauNDI CATATG 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 126, 300
FokI GGATG 3 cut(s) 58, 227, 586
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 126, 300
FspBI CTAG 1 cut(s) 99
GluI GCNGC 2 cut(s) 126, 300
GsuI CTGGAG 1 cut(s) 546
Hin1II CATG 3 cut(s) 179, 652, 659
HinfI GANTC 3 cut(s) 236, 316, 548
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 384, 439, 454
Hpy188III TCNNGA 4 cut(s) 247, 545, 563, 656
HpyAV CCTTC 3 cut(s) 368, 459, 560
HpyCH4III ACNGT 2 cut(s) 135, 541
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 299
HpyF3I CTNAG 2 cut(s) 438, 630
Hsp92II CATG 3 cut(s) 179, 652, 659
LmnI GCTCC 2 cut(s) 192, 565
Lsp1109I GCAGC 2 cut(s) 137, 311
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 91
MboII GAAGA 5 cut(s) 6, 362, 380, 572, 620
MhlI GDGCHC 2 cut(s) 197, 573
MluCI AATT 2 cut(s) 108, 277
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 2 cut(s) 480, 560
MnlI CCTC 6 cut(s) 107, 204, 364, 433, 607, 610
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 3 cut(s) 344, 396, 480
MslI CAYNNNNRTG 1 cut(s) 426
MspCI CTTAAG 1 cut(s) 479
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 267, 299
NdeI CATATG 1 cut(s) 511
NlaIII CATG 3 cut(s) 179, 652, 659
NlaIV GGNNCC 4 cut(s) 151, 183, 561, 572
NmuCI GTSAC 1 cut(s) 91
NspI RCATGY 1 cut(s) 179
OliI CACNNNNGTG 1 cut(s) 426
PagI TCATGA 1 cut(s) 655
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 2 cut(s) 316, 548
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 2 cut(s) 127, 301
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 4 cut(s) 151, 183, 561, 572
RseI CAYNNNNRTG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 197
SaqAI TTAA 3 cut(s) 344, 396, 480
SatI GCNGC 2 cut(s) 126, 300
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 2 cut(s) 197, 573
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 2 cut(s) 108, 277
SsiI CCGC 1 cut(s) 18
SspMI CTAG 1 cut(s) 99
SstI GAGCTC 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 135, 541
TaqI TCGA 2 cut(s) 228, 234
TasI AATT 2 cut(s) 108, 277
TfiI GAWTC 2 cut(s) 316, 548
Tru1I TTAA 3 cut(s) 344, 396, 480
Tru9I TTAA 3 cut(s) 344, 396, 480
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 2 cut(s) 125, 299
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 514, 540
TspRI CASTG 1 cut(s) 309
Van91I CCANNNNNTGG 1 cut(s) 295
Vha464I CTTAAG 1 cut(s) 479
XagI CCTNNNNNAGG 1 cut(s) 81
XapI RAATTY 1 cut(s) 277
XceI RCATGY 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.