Rh3DG237200

Prolycopene isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003452
Physical Location & Seq
Forward (+)
22696672 .. 22703774
7103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG237200.1

Sequence Viewer

Length: 906 bp
ATGGCTAAAATATCTTCCGCTTTATACGATTATCAATCAAATAAAAAGTTATTTTATGTCGCAGTCCTTACATCCCCTACCACAGGTGGGGTGACGGCTAGTTTTGGAATTAGAGGGTTGGTTGCAGCCACACAGTTGGCTGTGAGTGGTGCCAAGGTTTTGGTTTTAGAGAAGCATGTGGTTCCTGGTGGGAGCTCTGGCTATTATGAGAGGGATGGTTATACATTCGATGTCGAGTCTCCTGTCCTGATTGGTCTTGGCGATAAGGGCAATCTAAATTTGATAACCCAAGCATTGGCAGCAGTGGGTTGTGAGATGAGGGAATTTTTTGCCAAAGCCATATTGTCAAATGCTACAAGATGGAGTACCTTTGGAAAGCTGTTAAAAGAAGACGACCTTCCTAAAGAAGAGGAAAGATTTCAGAGAGTTTATGTTAAGTCTCCATCTTTTTTTTCCATTCACAAGGGTGTCAAATCTGAGGCTCTACCTTCAGATACAGATTGCCACCACTTTGTGCTTAAGGACGATTGGACAAGGTTGGACGAGCCATATGGAAGTTTATTCATAAGTATTCCAACTGTTCTGGATTCATCGTTGGCTCCAGAAGGGCACCATATTCTTCACATATTTACGACCTCATCCTTTGAAGACTGGGAGGGACTCTCTAGAAAGGACTATGAATCAAAGAAGGAGCTTATGTCATATGTGATCATTAGCAAATTAGAGAAGATACTATTTCCAAGGCTTAGGTCATCCATCGTTTTTAAGGAGACAACACTAAAATTGAGGCCTTTAGAAGAAGTCCCCAATATTGAATATTGCCCTTCTTCGACTATATGGATGGCTAAGGACATTAGTGTGAGACTTTGTCAGGGAGGAAAATTGATATACTTGCACCTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
Amino_oxidase

Protein Analysis

301

Amino Acids

33.66

Weight (kDa)

6.46

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_8 PF13450 36 - 92 1.1e-08 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 149, 609
AccB7I CCANNNNNTGG 1 cut(s) 295
AciI CCGC 1 cut(s) 18
AcsI RAATTY 2 cut(s) 277, 323
AcuI CTGAAG 1 cut(s) 474
AdeI CACNNNGTG 1 cut(s) 514
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 3 cut(s) 83, 87, 295
AflII CTTAAG 1 cut(s) 518
AgsI TTSAA 2 cut(s) 647, 815
AjnI CCWGG 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 465
AluBI AGCT 3 cut(s) 195, 379, 694
AluI AGCT 3 cut(s) 195, 379, 694
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 4 cut(s) 243, 444, 764, 856
AoxI GGCC 1 cut(s) 788
ApeKI GCWGC 2 cut(s) 125, 299
ApoI RAATTY 2 cut(s) 277, 323
Asp700I GAANNNNTTC 1 cut(s) 417
AsuHPI GGTGA 1 cut(s) 103
BaeGI GKGCMC 1 cut(s) 612
BanI GGYRCC 2 cut(s) 149, 609
BanII GRGCYC 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 396, 654
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 137, 311
BccI CCATC 5 cut(s) 209, 354, 451, 764, 835
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 186
BclI TGATCA 1 cut(s) 708
BcoDI GTCTC 4 cut(s) 243, 444, 764, 856
BfaI CTAG 2 cut(s) 99, 666
BfrI CTTAAG 1 cut(s) 518
BisI GCNGC 2 cut(s) 126, 300
BlsI GCNGC 2 cut(s) 127, 301
Bme1390I CCNGG 1 cut(s) 186
BmiI GGNNCC 4 cut(s) 151, 183, 600, 611
BmrFI CCNGG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 661
BmuI ACTGGG 1 cut(s) 661
BpiI GAAGAC 2 cut(s) 396, 654
BplI GAGNNNNNCTC 2 cut(s) 647, 679
BpmI CTGGAG 1 cut(s) 585
Bpu10I CCTNAGC 2 cut(s) 746, 846
BsaJI CCNNGG 2 cut(s) 153, 740
BsaXI ACNNNNNCTCC 2 cut(s) 683, 713
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 87, 295
Bse1I ACTGG 1 cut(s) 656
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 153, 740
BseGI GGATG 5 cut(s) 71, 220, 638, 752, 846
BseLI CCNNNNNNNGG 3 cut(s) 83, 87, 295
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 656
BseSI GKGCMC 1 cut(s) 612
BseXI GCAGC 2 cut(s) 137, 311
BshFI GGCC 1 cut(s) 790
BshNI GGYRCC 2 cut(s) 149, 609
BsiHKAI GWGCWC 1 cut(s) 197
BslFI GGGAC 2 cut(s) 672, 788
BslI CCNNNNNNNGG 3 cut(s) 83, 87, 295
BsmAI GTCTC 4 cut(s) 243, 444, 764, 856
BsmFI GGGAC 2 cut(s) 672, 788
BsnI GGCC 1 cut(s) 790
Bsp1286I GDGCHC 2 cut(s) 197, 612
Bsp143I GATC 1 cut(s) 708
BspACI CCGC 1 cut(s) 18
BspANI GGCC 1 cut(s) 790
BspCNI CTCAG 1 cut(s) 469
BspLI GGNNCC 4 cut(s) 151, 183, 600, 611
BspT107I GGYRCC 2 cut(s) 149, 609
BspTI CTTAAG 1 cut(s) 518
BsrI ACTGG 1 cut(s) 656
BssECI CCNNGG 2 cut(s) 153, 740
BssMI GATC 1 cut(s) 708
BssT1I CCWWGG 2 cut(s) 153, 740
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 135, 580
Bst6I CTCTTC 1 cut(s) 402
BstAFI CTTAAG 1 cut(s) 518
BstDEI CTNAG 3 cut(s) 477, 746, 846
BstENI CCTNNNNNAGG 1 cut(s) 81
BstF5I GGATG 5 cut(s) 71, 220, 638, 752, 846
BstKTI GATC 1 cut(s) 711
BstMAI GTCTC 4 cut(s) 243, 444, 764, 856
BstMBI GATC 1 cut(s) 708
BstMWI GCNNNNNNNGC 2 cut(s) 267, 299
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 612
BstV1I GCAGC 2 cut(s) 137, 311
BstV2I GAAGAC 2 cut(s) 396, 654
BstXI CCANNNNNNTGG 2 cut(s) 136, 160
BsuRI GGCC 1 cut(s) 790
BtsCI GGATG 5 cut(s) 71, 220, 638, 752, 846
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
Csp6I GTAC 1 cut(s) 366
CviAII CATG 1 cut(s) 176
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 3 cut(s) 477, 746, 846
DpnI GATC 1 cut(s) 710
DpnII GATC 1 cut(s) 708
DraIII CACNNNGTG 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Ecl136II GAGCTC 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 153, 740
Eco147I AGGCCT 1 cut(s) 790
Eco24I GRGCYC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 474
EcoICRI GAGCTC 1 cut(s) 195
EcoNI CCTNNNNNAGG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 2 cut(s) 153, 740
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 2 cut(s) 153, 740
FaeI CATG 1 cut(s) 179
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FaqI GGGAC 2 cut(s) 672, 788
FatI CATG 1 cut(s) 175
FauNDI CATATG 2 cut(s) 550, 703
FbaI TGATCA 1 cut(s) 708
Fnu4HI GCNGC 2 cut(s) 126, 300
FokI GGATG 5 cut(s) 58, 227, 625, 739, 853
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 126, 300
FspBI CTAG 2 cut(s) 99, 666
GluI GCNGC 2 cut(s) 126, 300
GsuI CTGGAG 1 cut(s) 585
HaeIII GGCC 1 cut(s) 790
Hin1II CATG 1 cut(s) 179
HinfI GANTC 4 cut(s) 236, 587, 660, 680
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 423, 478, 493
Hpy188III TCNNGA 4 cut(s) 247, 584, 602, 666
HpyAV CCTTC 5 cut(s) 407, 498, 599, 682, 834
HpyCH4III ACNGT 2 cut(s) 135, 580
HpyCH4V TGCA 2 cut(s) 125, 895
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 299
HpyF3I CTNAG 3 cut(s) 477, 746, 846
Hsp92II CATG 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 708
Kzo9I GATC 1 cut(s) 708
LmnI GCTCC 3 cut(s) 192, 604, 691
Lsp1109I GCAGC 2 cut(s) 137, 311
MaeI CTAG 2 cut(s) 99, 666
MaeIII GTNAC 1 cut(s) 91
MalI GATC 1 cut(s) 710
MboI GATC 1 cut(s) 708
MboII GAAGA 8 cut(s) 6, 401, 419, 611, 659, 739, 809, 819
MhlI GDGCHC 2 cut(s) 197, 612
MluCI AATT 6 cut(s) 108, 277, 323, 719, 782, 881
MlyI GAGTC 2 cut(s) 245, 654
MmeI TCCRAC 2 cut(s) 519, 599
MnlI CCTC 9 cut(s) 107, 204, 312, 403, 472, 646, 649, 780, 869
MroXI GAANNNNTTC 1 cut(s) 417
MseI TTAA 4 cut(s) 383, 435, 519, 765
MslI CAYNNNNRTG 2 cut(s) 465, 857
MspCI CTTAAG 1 cut(s) 518
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 267, 299
NdeI CATATG 2 cut(s) 550, 703
NdeII GATC 1 cut(s) 708
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 4 cut(s) 151, 183, 600, 611
NmuCI GTSAC 1 cut(s) 91
NspI RCATGY 1 cut(s) 179
OliI CACNNNNGTG 1 cut(s) 465
PceI AGGCCT 1 cut(s) 790
PdmI GAANNNNTTC 1 cut(s) 417
PfeI GAWTC 2 cut(s) 587, 680
PflFI GACNNNGTC 1 cut(s) 867
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 2 cut(s) 127, 301
PleI GAGTC 2 cut(s) 244, 654
PpsI GAGTC 2 cut(s) 244, 654
Psp124BI GAGCTC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 4 cut(s) 151, 183, 600, 611
PsyI GACNNNGTC 1 cut(s) 867
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 2 cut(s) 465, 857
SacI GAGCTC 1 cut(s) 197
SaqAI TTAA 4 cut(s) 383, 435, 519, 765
SatI GCNGC 2 cut(s) 126, 300
Sau3AI GATC 1 cut(s) 708
SchI GAGTC 2 cut(s) 245, 654
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 2 cut(s) 197, 612
SmiMI CAYNNNNRTG 2 cut(s) 465, 857
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 6 cut(s) 108, 277, 323, 719, 782, 881
SseBI AGGCCT 1 cut(s) 790
SsiI CCGC 1 cut(s) 18
SspI AATATT 2 cut(s) 811, 818
SspMI CTAG 2 cut(s) 99, 666
SstI GAGCTC 1 cut(s) 197
StuI AGGCCT 1 cut(s) 790
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 2 cut(s) 153, 740
TaaI ACNGT 2 cut(s) 135, 580
TaqI TCGA 3 cut(s) 228, 234, 830
TasI AATT 6 cut(s) 108, 277, 323, 719, 782, 881
TfiI GAWTC 2 cut(s) 587, 680
Tru1I TTAA 4 cut(s) 383, 435, 519, 765
Tru9I TTAA 4 cut(s) 383, 435, 519, 765
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 2 cut(s) 125, 299
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 3 cut(s) 553, 579, 693
TspRI CASTG 1 cut(s) 309
Tth111I GACNNNGTC 1 cut(s) 867
Van91I CCANNNNNTGG 1 cut(s) 295
Vha464I CTTAAG 1 cut(s) 518
XagI CCTNNNNNAGG 1 cut(s) 81
XapI RAATTY 2 cut(s) 277, 323
XbaI TCTAGA 1 cut(s) 665
XceI RCATGY 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 417
XspI CTAG 2 cut(s) 99, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.