RLG00000002945

Prolycopene isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003452
Physical Location & Seq
Forward (+)
42159970 .. 42161553
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002945

Sequence Viewer

Length: 1167 bp
ATGGAAGAGCAGGGTCAGGAATGGGAGGGTTGGTTGCAGCCACACTTACTGGCTGTGAAGGGTGCCAAGGTTTTGGTTTTAGAGAAGCATGTGGTTCCGGGTGGGAGCTCTGGCTATTATGAGAGGGATGGTTATACATTCGATGTCGGGTCTTCTGTCATGATTGGTCTCGGCGATAAGGGCAATCTAAATTTGATAACCCAAGCATTGGCAGCAGTGGGTTGTGACATGCAGTTCTTTCAGAAGCCTCTTGAATGCTTGACACTTGCCTATTATTTACCTCAGAATGCTGGGGATATAGCTCGTAAATACATTCATGATCCCCACCTGTTGTCTTTCATAGATGCCGAGTGTTTTCTTGTGAGCACAGTCAAGGCTTGGCAAACACCAATGATCAATGTGAGCACGTCCTTGGCAAAAGGTCTGGTGGAACATGGCAGTAAGATACTTTACAAGGCCAATGTTACTGGCATCATAGTCGATCAGGGCAGAGCTGTAGGAGTTAGGCTTTCAGACAGGAGGGAATTTTTTGCCAAAGCCATATTATCAAATGCTACAAGATGGAGTACCTTTGGAAAGCTGCTAAAAGAAGACGACCTTCCTAAAGAAGAGGAAAAGTTTCAGAAAGTTTATGTTAAGCCCCCATCTTTTCTTTCCATTGACATGGGTGACGAATGGACAAGGTTAGAAGAGCCATATGGAAGTTTATTCGCAAGTATTCCAACCGTCCTCGATTCATCGTTGGCTCCAGAAGGGCACCATATTCTTCACATATTTACGACCTCTTCCATTGAAGAGTGGGAGGGACTCTCTCGAAAGGACTATGAATCAAAGAAGGAGCTTATGGCAGATGTGATCATTAGCAGATTAGAGAAGATACTATTTCCAGGGCTCAAGTCATCCATCGCTTTTAAGGAGGGCACTTATGGACCAATAACATGCGGAACTCCCAAGGGCTTATTGGGACTGCCATTGAATACAACAGCCATAGAAGGCCTTTACTGTGTTGGTGATAGCTGCTTTCCAGGACAAGGAGTTAGTGCTGTATCCTTCTCAGGACTAATGTGTGCTCATCGAGTAGCTGCTGATATAGGCCTTGAGAAGAAGTCCCGAATATTGGATGCTGCCCTTCTTCGACTATATCGATGGCTAGGGACATTAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
Amino_oxidase

Protein Analysis

389

Amino Acids

42.74

Weight (kDa)

5.9

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_8 PF13450 15 - 63 1.9e-06 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 62, 756
AccB7I CCANNNNNTGG 1 cut(s) 208
AciI CCGC 1 cut(s) 942
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 2 cut(s) 190, 524
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 3 cut(s) 208, 1031, 1117
AgsI TTSAA 3 cut(s) 254, 794, 976
AjiI CACGTC 1 cut(s) 408
AjnI CCWGG 2 cut(s) 886, 1024
AluBI AGCT 7 cut(s) 108, 302, 494, 580, 841, 1017, 1082
AluI AGCT 7 cut(s) 108, 302, 494, 580, 841, 1017, 1082
Alw21I GWGCWC 4 cut(s) 110, 368, 407, 1072
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 314
AoxI GGCC 3 cut(s) 456, 994, 1093
ApeKI GCWGC 6 cut(s) 37, 212, 580, 1017, 1082, 1124
ApoI RAATTY 2 cut(s) 190, 524
Asp700I GAANNNNTTC 1 cut(s) 618
AspS9I GGNCC 1 cut(s) 929
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 680, 1022
AvaII GGWCC 1 cut(s) 929
BaeGI GKGCMC 2 cut(s) 759, 923
BanI GGYRCC 2 cut(s) 62, 756
BanII GRGCYC 2 cut(s) 110, 894
BbsI GAAGAC 2 cut(s) 144, 597
Bbv12I GWGCWC 4 cut(s) 110, 368, 407, 1072
BbvI GCAGC 6 cut(s) 49, 224, 567, 1004, 1069, 1111
BccI CCATC 5 cut(s) 122, 555, 652, 911, 1140
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 2 cut(s) 888, 1026
BciVI GTATCC 1 cut(s) 1057
BclI TGATCA 2 cut(s) 393, 855
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 1151
BfmI CTRYAG 1 cut(s) 495
BfuI GTATCC 1 cut(s) 1057
BisI GCNGC 6 cut(s) 38, 213, 581, 1018, 1083, 1125
BlsI GCNGC 6 cut(s) 39, 214, 582, 1019, 1084, 1126
Bme1390I CCNGG 3 cut(s) 99, 888, 1026
Bme18I GGWCC 1 cut(s) 929
BmgBI CACGTC 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 929
BmiI GGNNCC 4 cut(s) 64, 96, 747, 758
BmrFI CCNGG 3 cut(s) 99, 888, 1026
BmsI GCATC 3 cut(s) 334, 480, 1111
BpiI GAAGAC 2 cut(s) 144, 597
BplI GAGNNNNNCTC 2 cut(s) 794, 826
BpmI CTGGAG 1 cut(s) 732
BpuEI CTTGAG 2 cut(s) 878, 1118
BpuMI CCSGG 1 cut(s) 99
Bsa29I ATCGAT 1 cut(s) 1144
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 4 cut(s) 66, 411, 887, 951
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 1031, 1117
Bse1I ACTGG 2 cut(s) 54, 472
BseBI CCWGG 2 cut(s) 888, 1026
BseCI ATCGAT 1 cut(s) 1144
BseDI CCNNGG 4 cut(s) 66, 411, 887, 951
BseGI GGATG 3 cut(s) 133, 899, 1126
BseLI CCNNNNNNNGG 3 cut(s) 208, 1031, 1117
BseMII CTCAG 2 cut(s) 296, 1068
BseNI ACTGG 2 cut(s) 54, 472
BseSI GKGCMC 2 cut(s) 759, 923
BseXI GCAGC 6 cut(s) 49, 224, 567, 1004, 1069, 1111
BseYI CCCAGC 1 cut(s) 290
BshFI GGCC 3 cut(s) 458, 996, 1095
BshNI GGYRCC 2 cut(s) 62, 756
BshVI ATCGAT 1 cut(s) 1144
BsiHKAI GWGCWC 4 cut(s) 110, 368, 407, 1072
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 3 cut(s) 819, 978, 1093
BslI CCNNNNNNNGG 3 cut(s) 208, 1031, 1117
BsmAI GTCTC 1 cut(s) 173
BsmFI GGGAC 3 cut(s) 819, 978, 1093
BsmI GAATGC 2 cut(s) 260, 292
BsnI GGCC 3 cut(s) 458, 996, 1095
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 7 cut(s) 110, 368, 407, 759, 894, 923, 1072
Bsp143I GATC 4 cut(s) 319, 393, 481, 855
BspACI CCGC 1 cut(s) 942
BspANI GGCC 3 cut(s) 458, 996, 1095
BspCNI CTCAG 2 cut(s) 295, 1067
BspDI ATCGAT 1 cut(s) 1144
BspHI TCATGA 2 cut(s) 159, 316
BspLI GGNNCC 4 cut(s) 64, 96, 747, 758
BspPI GGATC 1 cut(s) 314
BspQI GCTCTTC 1 cut(s) 684
BspT107I GGYRCC 2 cut(s) 62, 756
BspTNI GGTCTC 1 cut(s) 173
BsrI ACTGG 2 cut(s) 54, 472
BssECI CCNNGG 4 cut(s) 66, 411, 887, 951
BssMI GATC 4 cut(s) 319, 393, 481, 855
BssT1I CCWWGG 3 cut(s) 66, 411, 951
Bst2UI CCWGG 2 cut(s) 888, 1026
Bst4CI ACNGT 3 cut(s) 370, 727, 1004
Bst6I CTCTTC 4 cut(s) 603, 684, 789, 790
BstDEI CTNAG 2 cut(s) 282, 1054
BstF5I GGATG 3 cut(s) 133, 899, 1126
BstKTI GATC 4 cut(s) 322, 396, 484, 858
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 4 cut(s) 319, 393, 481, 855
BstMWI GCNNNNNNNGC 2 cut(s) 180, 212
BstNI CCWGG 2 cut(s) 888, 1026
BstNSI RCATGY 3 cut(s) 92, 232, 942
BstSCI CCNGG 3 cut(s) 97, 886, 1024
BstSFI CTRYAG 1 cut(s) 495
BstSLI GKGCMC 2 cut(s) 759, 923
BstV1I GCAGC 6 cut(s) 49, 224, 567, 1004, 1069, 1111
BstV2I GAAGAC 2 cut(s) 144, 597
BstXI CCANNNNNNTGG 2 cut(s) 73, 664
Bsu15I ATCGAT 1 cut(s) 1144
BsuI GTATCC 1 cut(s) 1057
BsuRI GGCC 3 cut(s) 458, 996, 1095
BsuTUI ATCGAT 1 cut(s) 1144
BtgZI GCGATG 1 cut(s) 889
BtrI CACGTC 1 cut(s) 408
BtsCI GGATG 3 cut(s) 133, 899, 1126
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 222
CciI TCATGA 2 cut(s) 159, 316
Cfr13I GGNCC 1 cut(s) 929
ClaI ATCGAT 1 cut(s) 1144
Csp6I GTAC 1 cut(s) 567
CviAII CATG 7 cut(s) 89, 160, 229, 317, 434, 664, 939
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 2 cut(s) 282, 1054
DpnI GATC 4 cut(s) 321, 395, 483, 857
DpnII GATC 4 cut(s) 319, 393, 481, 855
Eam1104I CTCTTC 4 cut(s) 603, 684, 789, 790
EarI CTCTTC 4 cut(s) 603, 684, 789, 790
Ecl136II GAGCTC 1 cut(s) 108
Eco130I CCWWGG 3 cut(s) 66, 411, 951
Eco147I AGGCCT 2 cut(s) 996, 1095
Eco24I GRGCYC 2 cut(s) 110, 894
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 929
Eco53kI GAGCTC 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 886, 1024
EcoT14I CCWWGG 3 cut(s) 66, 411, 951
EcoT38I GRGCYC 2 cut(s) 110, 894
ErhI CCWWGG 3 cut(s) 66, 411, 951
FaeI CATG 7 cut(s) 92, 163, 232, 320, 437, 667, 942
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FaqI GGGAC 3 cut(s) 819, 978, 1093
FatI CATG 7 cut(s) 88, 159, 228, 316, 433, 663, 938
FauNDI CATATG 1 cut(s) 697
FbaI TGATCA 2 cut(s) 393, 855
Fnu4HI GCNGC 6 cut(s) 38, 213, 581, 1018, 1083, 1125
FokI GGATG 3 cut(s) 140, 886, 1133
FriOI GRGCYC 2 cut(s) 110, 894
Fsp4HI GCNGC 6 cut(s) 38, 213, 581, 1018, 1083, 1125
FspBI CTAG 1 cut(s) 1151
GluI GCNGC 6 cut(s) 38, 213, 581, 1018, 1083, 1125
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 732
HaeIII GGCC 3 cut(s) 458, 996, 1095
HapII CCGG 1 cut(s) 98
Hin1II CATG 7 cut(s) 92, 163, 232, 320, 437, 667, 942
HinfI GANTC 3 cut(s) 734, 807, 827
HpaII CCGG 1 cut(s) 98
HphI GGTGA 2 cut(s) 680, 1022
Hpy188I TCNGA 4 cut(s) 243, 285, 514, 624
Hpy188III TCNNGA 8 cut(s) 17, 160, 251, 317, 749, 813, 1056, 1110
HpyAV CCTTC 7 cut(s) 52, 608, 746, 829, 986, 1060, 1139
HpyCH4III ACNGT 3 cut(s) 370, 727, 1004
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 2 cut(s) 37, 232
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 212
HpyF3I CTNAG 2 cut(s) 282, 1054
HpySE526I ACGT 1 cut(s) 407
Hsp92II CATG 7 cut(s) 92, 163, 232, 320, 437, 667, 942
Ksp22I TGATCA 2 cut(s) 393, 855
Kzo9I GATC 4 cut(s) 319, 393, 481, 855
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 3 cut(s) 105, 751, 838
Lsp1109I GCAGC 6 cut(s) 49, 224, 567, 1004, 1069, 1111
LweI GCATC 3 cut(s) 334, 480, 1111
MaeI CTAG 1 cut(s) 1151
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 3 cut(s) 224, 463, 668
MalI GATC 4 cut(s) 321, 395, 483, 857
MboI GATC 4 cut(s) 319, 393, 481, 855
MhlI GDGCHC 7 cut(s) 110, 368, 407, 759, 894, 923, 1072
MluCI AATT 2 cut(s) 190, 524
MlyI GAGTC 1 cut(s) 801
MmeI TCCRAC 1 cut(s) 746
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 2 cut(s) 636, 912
MslI CAYNNNNRTG 2 cut(s) 662, 1162
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 3 cut(s) 99, 888, 1026
Mva1269I GAATGC 2 cut(s) 260, 292
MvaI CCWGG 2 cut(s) 888, 1026
MwoI GCNNNNNNNGC 2 cut(s) 180, 212
NciI CCSGG 1 cut(s) 99
NdeI CATATG 1 cut(s) 697
NdeII GATC 4 cut(s) 319, 393, 481, 855
NlaIII CATG 7 cut(s) 92, 163, 232, 320, 437, 667, 942
NlaIV GGNNCC 4 cut(s) 64, 96, 747, 758
NmeAIII GCCGAG 2 cut(s) 150, 373
NmuCI GTSAC 2 cut(s) 224, 668
NspI RCATGY 3 cut(s) 92, 232, 942
PagI TCATGA 2 cut(s) 159, 316
PceI AGGCCT 2 cut(s) 996, 1095
PciSI GCTCTTC 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 1141
PctI GAATGC 2 cut(s) 260, 292
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 2 cut(s) 734, 827
PflMI CCANNNNNTGG 1 cut(s) 208
PfoI TCCNGGA 1 cut(s) 1024
PkrI GCNGC 6 cut(s) 39, 214, 582, 1019, 1084, 1126
PleI GAGTC 1 cut(s) 801
PpsI GAGTC 1 cut(s) 801
Psp124BI GAGCTC 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 886, 1024
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 2 cut(s) 886, 1024
PspN4I GGNNCC 4 cut(s) 64, 96, 747, 758
PspPI GGNCC 1 cut(s) 929
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
RseI CAYNNNNRTG 2 cut(s) 662, 1162
SacI GAGCTC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 2 cut(s) 636, 912
SatI GCNGC 6 cut(s) 38, 213, 581, 1018, 1083, 1125
Sau3AI GATC 4 cut(s) 319, 393, 481, 855
Sau96I GGNCC 1 cut(s) 929
SchI GAGTC 1 cut(s) 801
ScrFI CCNGG 3 cut(s) 99, 888, 1026
SduI GDGCHC 7 cut(s) 110, 368, 407, 759, 894, 923, 1072
SfaNI GCATC 3 cut(s) 334, 480, 1111
SfcI CTRYAG 1 cut(s) 495
SinI GGWCC 1 cut(s) 929
SmiMI CAYNNNNRTG 2 cut(s) 662, 1162
SmlI CTYRAG 2 cut(s) 893, 1097
SmoI CTYRAG 2 cut(s) 893, 1097
Sse9I AATT 2 cut(s) 190, 524
SseBI AGGCCT 2 cut(s) 996, 1095
SsiI CCGC 1 cut(s) 942
SspI AATATT 1 cut(s) 1116
SspMI CTAG 1 cut(s) 1151
SstI GAGCTC 1 cut(s) 110
StuI AGGCCT 2 cut(s) 996, 1095
StyD4I CCNGG 3 cut(s) 97, 886, 1024
StyI CCWWGG 3 cut(s) 66, 411, 951
TaaI ACNGT 3 cut(s) 370, 727, 1004
TaiI ACGT 1 cut(s) 410
TaqI TCGA 7 cut(s) 141, 480, 732, 814, 1075, 1135, 1144
TasI AATT 2 cut(s) 190, 524
TfiI GAWTC 2 cut(s) 734, 827
Tru1I TTAA 2 cut(s) 636, 912
Tru9I TTAA 2 cut(s) 636, 912
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 2 cut(s) 224, 668
TseI GCWGC 6 cut(s) 37, 212, 580, 1017, 1082, 1124
Tsp45I GTSAC 2 cut(s) 224, 668
TspDTI ATGAA 4 cut(s) 305, 328, 726, 840
TspRI CASTG 1 cut(s) 222
Van91I CCANNNNNTGG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 929
XapI RAATTY 2 cut(s) 190, 524
XceI RCATGY 3 cut(s) 92, 232, 942
XcmI CCANNNNNNNNNTGG 1 cut(s) 958
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 1 cut(s) 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.