Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003452

Physical Location & Seq

Genomic Coordinates Forward (+)

5079078 .. 5084122

Gene Structure 5045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1045600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTCAGTTTCAGCGATAAGGGCAATCTAAATTTGATAACCCAAGCACTGGCAGCTGTAGGTTGTGAGATGCCGGTGATTCCTGATCCGACTACTGTCCATTACCATCTACCCGATAATCTTTCTGTCCTAGTGCACAGAGAATACAGTGAATTTATTTCAGAACGTACTAGCAAATTTCCCCATGAAAAGCAAGGGATTCTCAAATTCTATGGTGTCTGTTGGAAGGTTTTCAATGCCTCGAACTCATTGGAACTGAAGTCACTTGAGGAGCCAATCTATCATTTTGGACAGTTTTTTCAGAAGCCTGTTGAATGCTTGACACTTGCCTACTATTTGCCTCAAAATGCTGGGGATATAGCTTGCAAATACATTCAGGATCCCCAACTGTTGTCTTTCATAGATGCGGAGTGTTTTATTGTGATTACAGTTAAGGCTTTGCAGACACCAATGATCAATGCAAGCATGGTTATGTGTGACAGGCATTATGGTGGGATTAACTACCCTATTGGTGGTGTTGGTGGAATTGCAAAGTCCTTAGCAAAAGGTCTGGTAGACCAGGGCAGTCAGATACTTTACAAGGCCAATGTTACTAACATCATAGTTGATCCGGGCAGAGTGGTTGGAGTAAGGCTTTCAGACGGGAGGGAATTCTTTGCAAAAACCATAATATCAAATGCTACAAGATGGAATACCTTTGCGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

236

Amino Acids

26.21

Weight (kDa)

6.99

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06820 AT1G06820 AT1G06820 AT1G06820
fragaria_vesca	FvH4_6g21000 FvH4_6g21000 FvH4_6g21000
malus_domestica	MD12G1045500.v1.1 MD12G1045600.v1.1 MD14G1044400.v1.1
prunus_persica	Prupe.7G089400_v2.0.a1 Prupe.7G089400_v2.0.a1 Prupe.7G089400_v2.0.a1
pyrus_communis	pycom14g03760
rosa_chinensis	RchiOBHm_Chr3g0477381 RchiOBHm_Chr7g0212011
rosa_laevigata	RLG00000002945 RLG00000023727
rosa_multiflora	Rmu_sc0014812.1_g000005 Rmu_ssc0000341.1_g000031
rosa_roxburghii	Rroxscaffold_3G00247190 Rroxscaffold_6G00404240 Rroxscaffold_6G00404710
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159800
rosa_samantha	Rh3AG210300 Rh3AG210500 Rh3BG243700 Rh3DG237200 Rh3DG237300 Rh7AG263000 Rh7CG279600
rosa_wichuraiana	Rw0G000310 Rw0G000320 Rw7G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	555
AccII	CGCG	1 cut(s)	703
AciI	CCGC	1 cut(s)	407
AclWI	GGATC	4 cut(s)	80, 374, 387, 602
AcsI	RAATTY	5 cut(s)	31, 152, 176, 206, 650
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	49, 512
AgsI	TTSAA	2 cut(s)	235, 314
AjnI	CCWGG	1 cut(s)	558
AluBI	AGCT	2 cut(s)	56, 362
AluI	AGCT	2 cut(s)	56, 362
Alw21I	GWGCWC	1 cut(s)	138
Alw44I	GTGCAC	1 cut(s)	134
AlwI	GGATC	4 cut(s)	80, 374, 387, 602
AoxI	GGCC	1 cut(s)	582
ApaLI	GTGCAC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	5 cut(s)	31, 152, 176, 206, 650
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	703
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	138
BamHI	GGATCC	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	2 cut(s)	114, 681
BciT130I	CCWGG	1 cut(s)	560
BclI	TGATCA	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	612
BfaI	CTAG	2 cut(s)	131, 171
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	560, 612
BmiI	GGNNCC	2 cut(s)	273, 381
BmrFI	CCNGG	2 cut(s)	560, 612
BmsI	GCATC	2 cut(s)	60, 394
BoxI	GACNNNNGTC	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	538
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 512
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	1 cut(s)	559
BseLI	CCNNNNNNNGG	2 cut(s)	49, 512
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	65
BseYI	CCCAGC	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	703
BshFI	GGCC	1 cut(s)	584
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	74, 611
BslI	CCNNNNNNNGG	2 cut(s)	49, 512
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	85, 379, 453, 607
BspACI	CCGC	1 cut(s)	407
BspANI	GGCC	1 cut(s)	584
BspFNI	CGCG	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	273, 381
BspPI	GGATC	4 cut(s)	80, 374, 387, 602
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	54
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	559
BssMI	GATC	4 cut(s)	85, 379, 453, 607
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	5 cut(s)	97, 149, 294, 390, 430
BstC8I	GCNNGC	2 cut(s)	364, 463
BstDEI	CTNAG	1 cut(s)	538
BstFNI	CGCG	1 cut(s)	703
BstHHI	GCGC	1 cut(s)	703
BstKTI	GATC	4 cut(s)	88, 382, 456, 610
BstMBI	GATC	4 cut(s)	85, 379, 453, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 53
BstNI	CCWGG	1 cut(s)	560
BstPAI	GACNNNNGTC	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	558, 610
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	138
BstUI	CGCG	1 cut(s)	703
BstV1I	GCAGC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	584
BtsIMutI	CAGTG	2 cut(s)	47, 154
Cac8I	GCNNGC	2 cut(s)	364, 463
CfoI	GCGC	1 cut(s)	703
Cfr10I	RCCGGY	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	2 cut(s)	185, 466
CviJI	RGCY	7 cut(s)	56, 274, 307, 362, 437, 584, 634
CviKI_1	RGCY	7 cut(s)	56, 274, 307, 362, 437, 584, 634
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	1 cut(s)	538
DpnI	GATC	4 cut(s)	87, 381, 455, 609
DpnII	GATC	4 cut(s)	85, 379, 453, 607
Eco57I	CTGAAG	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	558
FaeI	CATG	2 cut(s)	188, 469
FaiI	YATR	9 cut(s)	186, 213, 359, 401, 467, 473, 489, 602, 668
FatI	CATG	2 cut(s)	184, 465
FbaI	TGATCA	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	131, 171
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	1 cut(s)	54
GsaI	CCCAGC	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	584
HapII	CCGG	2 cut(s)	74, 611
HhaI	GCGC	1 cut(s)	703
Hin1II	CATG	2 cut(s)	188, 469
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HinfI	GANTC	2 cut(s)	79, 199
HpaII	CCGG	2 cut(s)	74, 611
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	136, 556
Hpy188I	TCNGA	5 cut(s)	90, 163, 303, 570, 640
Hpy188III	TCNNGA	2 cut(s)	83, 377
Hpy8I	GTNNAC	2 cut(s)	136, 556
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	5 cut(s)	97, 149, 294, 390, 430
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	6 cut(s)	136, 366, 442, 461, 530, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 53
HpyF3I	CTNAG	1 cut(s)	538
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	2 cut(s)	188, 469
HspAI	GCGC	1 cut(s)	701
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	4 cut(s)	85, 379, 453, 607
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	2 cut(s)	60, 394
MaeI	CTAG	2 cut(s)	131, 171
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	3 cut(s)	261, 476, 589
MalI	GATC	4 cut(s)	87, 381, 455, 609
MboI	GATC	4 cut(s)	85, 379, 453, 607
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	6 cut(s)	31, 152, 176, 206, 525, 650
MmeI	TCCRAC	3 cut(s)	113, 203, 604
MnlI	CCTC	4 cut(s)	250, 262, 351, 639
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	3 cut(s)	432, 498, 706
MslI	CAYNNNNRTG	2 cut(s)	470, 489
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	74, 611
MspR9I	CCNGG	2 cut(s)	560, 612
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	560
MvnI	CGCG	1 cut(s)	703
MwoI	GCNNNNNNNGC	2 cut(s)	21, 53
NciI	CCSGG	1 cut(s)	612
NdeII	GATC	4 cut(s)	85, 379, 453, 607
NlaIII	CATG	2 cut(s)	188, 469
NlaIV	GGNNCC	2 cut(s)	273, 381
NmuCI	GTSAC	2 cut(s)	261, 476
PctI	GAATGC	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	79, 199
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	55
PshAI	GACNNNNGTC	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	558
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	2 cut(s)	273, 381
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	2 cut(s)	470, 489
SaqAI	TTAA	3 cut(s)	432, 498, 706
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	4 cut(s)	85, 379, 453, 607
ScrFI	CCNGG	2 cut(s)	560, 612
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	7 cut(s)	58, 64, 169, 231, 364, 550, 698
SfaNI	GCATC	2 cut(s)	60, 394
SfcI	CTRYAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	2 cut(s)	470, 489
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	6 cut(s)	31, 152, 176, 206, 525, 650
SsiI	CCGC	1 cut(s)	407
SspMI	CTAG	2 cut(s)	131, 171
StyD4I	CCNGG	2 cut(s)	558, 610
TaaI	ACNGT	5 cut(s)	97, 149, 294, 390, 430
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	242
TasI	AATT	6 cut(s)	31, 152, 176, 206, 525, 650
TfiI	GAWTC	2 cut(s)	79, 199
Tru1I	TTAA	3 cut(s)	432, 498, 706
Tru9I	TTAA	3 cut(s)	432, 498, 706
TscAI	CASTG	2 cut(s)	54, 154
TseFI	GTSAC	2 cut(s)	261, 476
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	2 cut(s)	261, 476
TspDTI	ATGAA	2 cut(s)	201, 388
TspRI	CASTG	2 cut(s)	54, 154
Van91I	CCANNNNNTGG	1 cut(s)	49
VneI	GTGCAC	1 cut(s)	134
XapI	RAATTY	5 cut(s)	31, 152, 176, 206, 650
XmiI	GTMKAC	1 cut(s)	555
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	2 cut(s)	131, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.