Rw0G000310

Prolycopene isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00006
OG0003452
Physical Location & Seq
Forward (+)
187331 .. 194386
7056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000310.1

Sequence Viewer

Length: 1476 bp
ATGCCCCAACTTGTATTCACTTCAACAGCTCCCATGCAAAAATATCAGTGTCTCATCACTCACCCTAGTCCTCGGTTTTCAGGTCATAAAGTTTCTTCTTCAGAGTTTTACACTCTGAGGACCATTAGCTTCGTAGTGAGGTCTATTTCAACATTGAGCATAGATAAAGTAGTGGTGAGTGATGGAAGAGCAGGAATTAGAGGGTTGGTTGCAGCCACACAGTTGGCTGTGAGTGGTGCCGAGGTTGTGGTTTTAGAGAAGCATGTGGTTCCTGGTGGGAGCTTTGGCTATTATGAGAGGGATGGTTATACATTCGATGTCGAGTCTCCTGTCCTGATTGGTCTCGGCGATAAGGGCAATCTAAATTTGATAACCCAAGCATTGGCAGCAGTGGGTTGTGAGATGCAGGTGATACCTGATCCGACTGCTGTTCATTACCATCTACCCAATAATCTTTCTGTTCGAGTGCACAGAGAATACAGTCAATTTATTTCAGAACTTACTATTTTCAATGCCCTGAACTCATTCAAACTGAAGTCACTTGAGGAGCCACTCTATCTTTTTGCACAGTTCTTTCAGAAGCCTCTTGAGTGCTTAGCACTAGATATAAGGATATATATGAGGAAATATGTTCTAGATTTAAGGGATTTGGTGATATTGACACCAGCTTTGAATGTAGGGGTAAGACTTTCAGACAGGAGGGAATTTTTTGCCAAAGCCATATTATCAAATGCTACAAGATGGAGTACCTTTGGAAAGCTGTTAAAAGAAGACGACCTTCCTAAAGAAGAGGAAAGATTTCAGAGAGTTTATGTTAAGTCCCCATCTTTTTTTTCCATTCACATGGGTGTCAAAGCTGAGGCTCTGCCTTCAGATACAGATTGCCACCACTTTGTGCTTAAGGACGATTGGACAAGGTTGGACGAGCCATATGGAAGTTTATTCATAAGTATTCCAACTGTTCTGGATTCATCGTTGGCTCCAGAAGGGCACCATATTCTTCACATATTTACGACCTCATCCTTTGAAGACTGGGAGGGACTCTCTAGAAAGGACTATGAATCAAAGAAGGAGCTTATGTCATATGTGATCATTAGCAAATTAGAGAAGATACTATTTCCAAGGCTTAGGTCATCCATCGTTTTTAAGGAGGTGGGAACACCTAAGACACACAGGCGATACATGGCTCGTGAACAGGGTACTTATGGACCAATACCACGCAGAACTCCCAAGGGCTTATTGGGACTATCATTGAATACAACAACTATAGAAGATCTTTACTGTGTTGGTGATAGATACTTTCCAGGACAAGGAGTTAATGTTGTATCCTTCTCAGGACTAATGTGTGCTCATCGAGTAGCTGCTGATATACATATTCTTAAGGCTCAGTTCAATCTGAAACCATATGAAAAGAAGTCCCCAATATTGAATGTTGCCCTTCTTCGACTATATGGATGGCTAAGGACATTAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
Amino_oxidase

Protein Analysis

491

Amino Acids

55.52

Weight (kDa)

8.88

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_8 PF13450 64 - 121 1.6e-08 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 397
Acc36I ACCTGC 1 cut(s) 397
AccB1I GGYRCC 2 cut(s) 236, 990
AccB7I CCANNNNNTGG 1 cut(s) 382
AclWI GGATC 1 cut(s) 413
AcsI RAATTY 2 cut(s) 364, 704
AcuI CTGAAG 3 cut(s) 84, 554, 855
AdeI CACNNNGTG 1 cut(s) 895
AfaI GTAC 2 cut(s) 748, 1201
AfiI CCNNNNNNNGG 2 cut(s) 382, 1310
AflII CTTAAG 2 cut(s) 899, 1379
AgsI TTSAA 9 cut(s) 24, 150, 511, 529, 673, 1028, 1255, 1393, 1429
AjnI CCWGG 2 cut(s) 271, 1303
AleI CACNNNNGTG 1 cut(s) 846
AluBI AGCT 8 cut(s) 29, 129, 282, 668, 760, 857, 1075, 1361
AluI AGCT 8 cut(s) 29, 129, 282, 668, 760, 857, 1075, 1361
Alw21I GWGCWC 2 cut(s) 471, 1351
Alw26I GTCTC 3 cut(s) 56, 330, 347
Alw44I GTGCAC 1 cut(s) 467
AlwI GGATC 1 cut(s) 413
ApaLI GTGCAC 1 cut(s) 467
ApeKI GCWGC 3 cut(s) 212, 386, 1361
ApoI RAATTY 2 cut(s) 364, 704
ArsI GACNNNNNNTTYG 2 cut(s) 652, 684
Asp700I GAANNNNTTC 2 cut(s) 524, 798
AspS9I GGNCC 2 cut(s) 120, 1208
AsuHPI GGTGA 5 cut(s) 53, 187, 421, 664, 1301
AvaII GGWCC 2 cut(s) 120, 1208
BaeGI GKGCMC 2 cut(s) 471, 993
BanI GGYRCC 2 cut(s) 236, 990
BauI CACGAG 1 cut(s) 1188
BbsI GAAGAC 2 cut(s) 777, 1035
Bbv12I GWGCWC 2 cut(s) 471, 1351
BbvCI CCTCAGC 1 cut(s) 858
BbvI GCAGC 3 cut(s) 224, 398, 1348
BccI CCATC 7 cut(s) 176, 296, 447, 735, 832, 1145, 1449
BciT130I CCWGG 2 cut(s) 273, 1305
BciVI GTATCC 1 cut(s) 1336
BclI TGATCA 1 cut(s) 1089
BcoDI GTCTC 3 cut(s) 56, 330, 347
BfaI CTAG 4 cut(s) 66, 602, 635, 1047
BfmI CTRYAG 1 cut(s) 1266
BfrI CTTAAG 2 cut(s) 899, 1379
BfuAI ACCTGC 1 cut(s) 397
BfuI GTATCC 1 cut(s) 1336
BglII AGATCT 1 cut(s) 1273
BisI GCNGC 3 cut(s) 213, 387, 1362
BlpI GCTNAGC 1 cut(s) 595
BlsI GCNGC 3 cut(s) 214, 388, 1363
Bme1390I CCNGG 2 cut(s) 273, 1305
Bme18I GGWCC 2 cut(s) 120, 1208
BmgT120I GGNCC 2 cut(s) 120, 1208
BmiI GGNNCC 5 cut(s) 238, 270, 549, 981, 992
BmrFI CCNGG 2 cut(s) 273, 1305
BmrI ACTGGG 1 cut(s) 1042
BmsI GCATC 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 1042
BpiI GAAGAC 2 cut(s) 777, 1035
BplI GAGNNNNNCTC 2 cut(s) 1028, 1060
BpmI CTGGAG 1 cut(s) 966
Bpu10I CCTNAGC 3 cut(s) 858, 1127, 1460
Bpu1102I GCTNAGC 1 cut(s) 595
BpuEI CTTGAG 2 cut(s) 563, 608
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 4 cut(s) 71, 240, 1121, 1230
BsaXI ACNNNNNCTCC 4 cut(s) 1064, 1094, 1305, 1335
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 1310
Bse1I ACTGG 1 cut(s) 1037
BseBI CCWGG 2 cut(s) 273, 1305
BseDI CCNNGG 4 cut(s) 71, 240, 1121, 1230
BseGI GGATG 4 cut(s) 307, 1019, 1133, 1460
BseLI CCNNNNNNNGG 2 cut(s) 382, 1310
BseMII CTCAG 4 cut(s) 107, 849, 1347, 1400
BseNI ACTGG 1 cut(s) 1037
BseRI GAGGAG 1 cut(s) 560
BseSI GKGCMC 2 cut(s) 471, 993
BseXI GCAGC 3 cut(s) 224, 398, 1348
BshNI GGYRCC 2 cut(s) 236, 990
BsiHKAI GWGCWC 2 cut(s) 471, 1351
BslFI GGGAC 4 cut(s) 805, 1053, 1257, 1402
BslI CCNNNNNNNGG 2 cut(s) 382, 1310
BsmAI GTCTC 3 cut(s) 56, 330, 347
BsmFI GGGAC 4 cut(s) 805, 1053, 1257, 1402
Bso31I GGTCTC 1 cut(s) 347
Bsp1286I GDGCHC 3 cut(s) 471, 993, 1351
Bsp143I GATC 3 cut(s) 418, 1089, 1273
Bsp1720I GCTNAGC 1 cut(s) 595
BspCNI CTCAG 4 cut(s) 108, 850, 1346, 1399
BspLI GGNNCC 5 cut(s) 238, 270, 549, 981, 992
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 1 cut(s) 413
BspQI GCTCTTC 1 cut(s) 181
BspT107I GGYRCC 2 cut(s) 236, 990
BspTI CTTAAG 2 cut(s) 899, 1379
BspTNI GGTCTC 1 cut(s) 347
BsrI ACTGG 1 cut(s) 1037
BssECI CCNNGG 4 cut(s) 71, 240, 1121, 1230
BssMI GATC 3 cut(s) 418, 1089, 1273
BssSI CACGAG 1 cut(s) 1188
BssT1I CCWWGG 2 cut(s) 1121, 1230
Bst2BI CACGAG 1 cut(s) 1188
Bst2UI CCWGG 2 cut(s) 273, 1305
Bst4CI ACNGT 5 cut(s) 222, 482, 570, 961, 1283
Bst6I CTCTTC 2 cut(s) 181, 783
BstAFI CTTAAG 2 cut(s) 899, 1379
BstDEI CTNAG 8 cut(s) 116, 595, 858, 1127, 1164, 1333, 1386, 1460
BstF5I GGATG 4 cut(s) 307, 1019, 1133, 1460
BstKTI GATC 3 cut(s) 421, 1092, 1276
BstMAI GTCTC 3 cut(s) 56, 330, 347
BstMBI GATC 3 cut(s) 418, 1089, 1273
BstMWI GCNNNNNNNGC 2 cut(s) 354, 386
BstNI CCWGG 2 cut(s) 273, 1305
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 271, 1303
BstSFI CTRYAG 1 cut(s) 1266
BstSLI GKGCMC 2 cut(s) 471, 993
BstV1I GCAGC 3 cut(s) 224, 398, 1348
BstV2I GAAGAC 2 cut(s) 777, 1035
BstX2I RGATCY 1 cut(s) 1273
BstXI CCANNNNNNTGG 2 cut(s) 223, 844
BstYI RGATCY 1 cut(s) 1273
BsuI GTATCC 1 cut(s) 1336
BtsCI GGATG 4 cut(s) 307, 1019, 1133, 1460
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 53, 396
BveI ACCTGC 1 cut(s) 397
Cfr13I GGNCC 2 cut(s) 120, 1208
Csp6I GTAC 2 cut(s) 747, 1200
CviAII CATG 4 cut(s) 34, 263, 844, 1183
CviQI GTAC 2 cut(s) 747, 1200
DdeI CTNAG 8 cut(s) 116, 595, 858, 1127, 1164, 1333, 1386, 1460
DpnI GATC 3 cut(s) 420, 1091, 1275
DpnII GATC 3 cut(s) 418, 1089, 1273
DraIII CACNNNGTG 1 cut(s) 895
Eam1104I CTCTTC 2 cut(s) 181, 783
EarI CTCTTC 2 cut(s) 181, 783
Eco130I CCWWGG 2 cut(s) 1121, 1230
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 2 cut(s) 120, 1208
Eco57I CTGAAG 3 cut(s) 84, 554, 855
EcoRII CCWGG 2 cut(s) 271, 1303
EcoT14I CCWWGG 2 cut(s) 1121, 1230
ErhI CCWWGG 2 cut(s) 1121, 1230
FaeI CATG 4 cut(s) 37, 266, 847, 1186
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FaqI GGGAC 4 cut(s) 805, 1053, 1257, 1402
FatI CATG 4 cut(s) 33, 262, 843, 1182
FauNDI CATATG 3 cut(s) 931, 1084, 1405
FbaI TGATCA 1 cut(s) 1089
Fnu4HI GCNGC 3 cut(s) 213, 387, 1362
FokI GGATG 4 cut(s) 314, 1006, 1120, 1467
Fsp4HI GCNGC 3 cut(s) 213, 387, 1362
FspBI CTAG 4 cut(s) 66, 602, 635, 1047
GluI GCNGC 3 cut(s) 213, 387, 1362
GsuI CTGGAG 1 cut(s) 966
Hin1II CATG 4 cut(s) 37, 266, 847, 1186
HinfI GANTC 4 cut(s) 323, 968, 1041, 1061
HphI GGTGA 5 cut(s) 53, 187, 421, 664, 1301
Hpy166II GTNNAC 2 cut(s) 469, 1193
Hpy188I TCNGA 9 cut(s) 103, 117, 423, 496, 579, 694, 804, 874, 1398
Hpy188III TCNNGA 8 cut(s) 334, 587, 635, 965, 983, 1047, 1190, 1335
Hpy8I GTNNAC 2 cut(s) 469, 1193
HpyAV CCTTC 6 cut(s) 788, 879, 980, 1063, 1339, 1448
HpyCH4III ACNGT 5 cut(s) 222, 482, 570, 961, 1283
HpyCH4V TGCA 5 cut(s) 37, 212, 406, 469, 566
HpyF10VI GCNNNNNNNGC 2 cut(s) 354, 386
HpyF3I CTNAG 8 cut(s) 116, 595, 858, 1127, 1164, 1333, 1386, 1460
Hsp92II CATG 4 cut(s) 37, 266, 847, 1186
Ksp22I TGATCA 1 cut(s) 1089
Kzo9I GATC 3 cut(s) 418, 1089, 1273
LguI GCTCTTC 1 cut(s) 181
LmnI GCTCC 5 cut(s) 34, 279, 547, 985, 1072
Lsp1109I GCAGC 3 cut(s) 224, 398, 1348
LweI GCATC 1 cut(s) 393
MaeI CTAG 4 cut(s) 66, 602, 635, 1047
MaeIII GTNAC 1 cut(s) 537
MalI GATC 3 cut(s) 420, 1091, 1275
MboI GATC 3 cut(s) 418, 1089, 1273
MflI RGATCY 1 cut(s) 1273
MhlI GDGCHC 3 cut(s) 471, 993, 1351
MluCI AATT 5 cut(s) 195, 364, 485, 704, 1100
MlyI GAGTC 2 cut(s) 332, 1035
MmeI TCCRAC 3 cut(s) 446, 900, 980
MroXI GAANNNNTTC 2 cut(s) 524, 798
MseI TTAA 7 cut(s) 641, 764, 816, 900, 1146, 1317, 1380
MslI CAYNNNNRTG 3 cut(s) 842, 846, 1471
MspCI CTTAAG 2 cut(s) 899, 1379
MspR9I CCNGG 2 cut(s) 273, 1305
MvaI CCWGG 2 cut(s) 273, 1305
MwoI GCNNNNNNNGC 2 cut(s) 354, 386
NdeI CATATG 3 cut(s) 931, 1084, 1405
NdeII GATC 3 cut(s) 418, 1089, 1273
NlaIII CATG 4 cut(s) 37, 266, 847, 1186
NlaIV GGNNCC 5 cut(s) 238, 270, 549, 981, 992
NmeAIII GCCGAG 2 cut(s) 265, 324
NmuCI GTSAC 1 cut(s) 537
NspI RCATGY 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 846
PaqCI CACCTGC 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 181
PdmI GAANNNNTTC 2 cut(s) 524, 798
PfeI GAWTC 2 cut(s) 968, 1061
PflMI CCANNNNNTGG 1 cut(s) 382
PfoI TCCNGGA 1 cut(s) 1303
PkrI GCNGC 3 cut(s) 214, 388, 1363
PleI GAGTC 2 cut(s) 331, 1035
PpsI GAGTC 2 cut(s) 331, 1035
Psp6I CCWGG 2 cut(s) 271, 1303
PspGI CCWGG 2 cut(s) 271, 1303
PspN4I GGNNCC 5 cut(s) 238, 270, 549, 981, 992
PspPI GGNCC 2 cut(s) 120, 1208
PsuI RGATCY 1 cut(s) 1273
RsaI GTAC 2 cut(s) 748, 1201
RsaNI GTAC 2 cut(s) 747, 1200
RseI CAYNNNNRTG 3 cut(s) 842, 846, 1471
SapI GCTCTTC 1 cut(s) 181
SaqAI TTAA 7 cut(s) 641, 764, 816, 900, 1146, 1317, 1380
SatI GCNGC 3 cut(s) 213, 387, 1362
Sau3AI GATC 3 cut(s) 418, 1089, 1273
Sau96I GGNCC 2 cut(s) 120, 1208
SchI GAGTC 2 cut(s) 332, 1035
ScrFI CCNGG 2 cut(s) 273, 1305
SduI GDGCHC 3 cut(s) 471, 993, 1351
SfaNI GCATC 1 cut(s) 393
SfcI CTRYAG 1 cut(s) 1266
SinI GGWCC 2 cut(s) 120, 1208
SmiMI CAYNNNNRTG 3 cut(s) 842, 846, 1471
SmlI CTYRAG 4 cut(s) 542, 587, 899, 1379
SmoI CTYRAG 4 cut(s) 542, 587, 899, 1379
Sse9I AATT 5 cut(s) 195, 364, 485, 704, 1100
SspI AATATT 1 cut(s) 1425
SspMI CTAG 4 cut(s) 66, 602, 635, 1047
StyD4I CCNGG 2 cut(s) 271, 1303
StyI CCWWGG 2 cut(s) 1121, 1230
TaaI ACNGT 5 cut(s) 222, 482, 570, 961, 1283
TaqI TCGA 5 cut(s) 315, 321, 463, 1354, 1444
TasI AATT 5 cut(s) 195, 364, 485, 704, 1100
TfiI GAWTC 2 cut(s) 968, 1061
Tru1I TTAA 7 cut(s) 641, 764, 816, 900, 1146, 1317, 1380
Tru9I TTAA 7 cut(s) 641, 764, 816, 900, 1146, 1317, 1380
TscAI CASTG 2 cut(s) 53, 396
TseFI GTSAC 1 cut(s) 537
TseI GCWGC 3 cut(s) 212, 386, 1361
Tsp45I GTSAC 1 cut(s) 537
TspDTI ATGAA 5 cut(s) 422, 934, 960, 1074, 1422
TspRI CASTG 2 cut(s) 53, 396
Van91I CCANNNNNTGG 1 cut(s) 382
Vha464I CTTAAG 2 cut(s) 899, 1379
VneI GTGCAC 1 cut(s) 467
VpaK11BI GGWCC 2 cut(s) 120, 1208
XapI RAATTY 2 cut(s) 364, 704
XbaI TCTAGA 2 cut(s) 634, 1046
XceI RCATGY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 1237
XmnI GAANNNNTTC 2 cut(s) 524, 798
XspI CTAG 4 cut(s) 66, 602, 635, 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.