Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00006

Orthogroup ID

OG0003452

Physical Location & Seq

Genomic Coordinates Forward (+)

197639 .. 199874

Gene Structure 2236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCACCTTTCTCAGTTTCCCAGTCACCACAGCCAGTTATCTGGCCATGTTCAGAGTCCCCACTTGGGTAAAACCAGACCCAGAAGTCAACAACCTCCGATTTCCACTTTAGGATGTTGCAATGTTAAAGACTACTTTCAGACTCAAACACCCAGAAGGAAATTGAATCAAGGAAGTGGGTTGAGATATTCGAATTCGAAAAATTGGAGCTTTGCAGTGAGGTCCAGTTCAACATTGAGCGTAGATAAAGTGTTGGAGAGTGATGGAAAGGCAGGTGGGAAGAGTAAATATGATGCTATTGTTATAGGGTCAGGGATTGGAGGGTTGGTTGCAGCTACACAGTTGGCTGTGAAGGGTGCCAAGGTTTTGGTTTTGGAGAAGTATGTGATTCCTGGTGGGAGTTCTGGGTACTATGAGAGGGATGGTTATACTTTCGATGTTGGGTCTTCTGTCATGTTCGGTTTCAGCGATAAGGGCAATCTAAACTTGATAACACAAGCATTGGCAGCAGTGGGTTGTGAGATGCAGGTGATACCTGATCCAACTACTGTCCATTATCATCTACCGGATAATCTTTCTGTTCGAGTACACAGAGAATACAGTGAATTTATTTCAGAACTTACTGCTAAATTTCCCCATGAAAAGAATGGGATCCTAAAATTCTTCGGTGAATGTTGGAAGGTTTTCAATGCCTTGAACTCTTTGGAACTGAAGTCACTTGAGGAGCCTATCTATCTTTTTGGACAGTTCTTTCAGAAGCCTCTTGAATGCTTGACACTAGCCTATTATTTGCCTCAAAATGCTGGGGACATAGCTCGTAGGTACATTCAGGATCCCCAACTGTTGTCTTTCATTGATGCGGAGTGTTTTATTGTGAGCACAGTCAAGGCTTTGCAGACACCGATGATCAATGCGAGCATGGTGATGTGTGACAGGCATTATGGTGGAATTAACTACCCTGTTGGTGGCGTTGGGGGAATTGCAAAGTCCTTGGCGAAAGGTCTGGTGGAGCTGGGCAGTGAGATACTTTACAAGGCCAATGTTACTGGCATCATACTTGATCAGGGTAGAGCT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

358

Amino Acids

39.18

Weight (kDa)

8.68

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	98 - 351	7.5e-07	FAD dependent oxidoreductase
NAD_binding_8	PF13450	101 - 162	8.2e-14	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	106 - 353	4.6e-12	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06820 AT1G06820 AT1G06820 AT1G06820
fragaria_vesca	FvH4_6g21000 FvH4_6g21000 FvH4_6g21000
malus_domestica	MD12G1045500.v1.1 MD12G1045600.v1.1 MD14G1044400.v1.1
prunus_persica	Prupe.7G089400_v2.0.a1 Prupe.7G089400_v2.0.a1 Prupe.7G089400_v2.0.a1
pyrus_communis	pycom14g03760
rosa_chinensis	RchiOBHm_Chr3g0477381 RchiOBHm_Chr7g0212011
rosa_laevigata	RLG00000002945 RLG00000023727
rosa_multiflora	Rmu_sc0014812.1_g000005 Rmu_ssc0000341.1_g000031
rosa_roxburghii	Rroxscaffold_3G00247190 Rroxscaffold_6G00404240 Rroxscaffold_6G00404710
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159800
rosa_samantha	Rh3AG210300 Rh3AG210500 Rh3BG243700 Rh3DG237200 Rh3DG237300 Rh7AG263000 Rh7CG279600
rosa_wichuraiana	Rw0G000310 Rw0G000320 Rw7G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	263, 517
AasI	GACNNNNNNGTC	1 cut(s)	84
Acc36I	ACCTGC	2 cut(s)	263, 517
AccB1I	GGYRCC	1 cut(s)	356
AciI	CCGC	1 cut(s)	860
AclWI	GGATC	5 cut(s)	533, 646, 659, 827, 840
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	4 cut(s)	193, 605, 629, 659
AcuI	CTGAAG	1 cut(s)	731
AfaI	GTAC	3 cut(s)	410, 588, 824
AfiI	CCNNNNNNNGG	2 cut(s)	65, 965
AgsI	TTSAA	5 cut(s)	166, 231, 688, 697, 767
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	5 cut(s)	210, 335, 815, 1012, 1073
AluI	AGCT	5 cut(s)	210, 335, 815, 1012, 1073
Alw21I	GWGCWC	1 cut(s)	881
AlwI	GGATC	5 cut(s)	533, 646, 659, 827, 840
AoxI	GGCC	2 cut(s)	43, 1035
ApeKI	GCWGC	2 cut(s)	332, 506
ApoI	RAATTY	4 cut(s)	193, 605, 629, 659
Asp700I	GAANNNNTTC	1 cut(s)	683
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	4 cut(s)	17, 541, 680, 934
AsuII	TTCGAA	2 cut(s)	191, 197
AvaII	GGWCC	1 cut(s)	222
BalI	TGGCCA	1 cut(s)	45
BamHI	GGATCC	2 cut(s)	651, 832
BanI	GGYRCC	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	881
BbvI	GCAGC	2 cut(s)	344, 518
BccI	CCATC	2 cut(s)	257, 416
BciT130I	CCWGG	1 cut(s)	393
BclI	TGATCA	2 cut(s)	906, 1060
BfaI	CTAG	1 cut(s)	779
BfuAI	ACCTGC	2 cut(s)	263, 517
BisI	GCNGC	2 cut(s)	333, 507
BlsI	GCNGC	2 cut(s)	334, 508
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	4 cut(s)	358, 653, 726, 834
BmrFI	CCNGG	1 cut(s)	393
BmrI	ACTGGG	1 cut(s)	15
BmsI	GCATC	4 cut(s)	283, 513, 847, 1059
BmuI	ACTGGG	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	438
Bpu14I	TTCGAA	2 cut(s)	191, 197
BpuEI	CTTGAG	1 cut(s)	740
BsaJI	CCNNGG	2 cut(s)	360, 990
BsaWI	WCCGGW	1 cut(s)	565
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 965
Bse1I	ACTGG	4 cut(s)	21, 34, 225, 1051
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	360, 990
BseGI	GGATG	2 cut(s)	119, 427
BseLI	CCNNNNNNNGG	2 cut(s)	65, 965
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	4 cut(s)	21, 34, 225, 1051
BseRI	GAGGAG	1 cut(s)	737
BseXI	GCAGC	2 cut(s)	344, 518
BseYI	CCCAGC	2 cut(s)	803, 1012
BshFI	GGCC	2 cut(s)	45, 1037
BshNI	GGYRCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	881
BsiSI	CCGG	1 cut(s)	566
BslFI	GGGAC	2 cut(s)	42, 821
BslI	CCNNNNNNNGG	2 cut(s)	65, 965
BsmFI	GGGAC	2 cut(s)	42, 821
BsmI	GAATGC	1 cut(s)	773
BsnI	GGCC	2 cut(s)	45, 1037
Bsp119I	TTCGAA	2 cut(s)	191, 197
Bsp1286I	GDGCHC	1 cut(s)	881
Bsp143I	GATC	5 cut(s)	538, 651, 832, 906, 1060
BspACI	CCGC	1 cut(s)	860
BspANI	GGCC	2 cut(s)	45, 1037
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	4 cut(s)	358, 653, 726, 834
BspMI	ACCTGC	2 cut(s)	263, 517
BspPI	GGATC	5 cut(s)	533, 646, 659, 827, 840
BspT104I	TTCGAA	2 cut(s)	191, 197
BspT107I	GGYRCC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	4 cut(s)	21, 34, 225, 1051
BssECI	CCNNGG	2 cut(s)	360, 990
BssMI	GATC	5 cut(s)	538, 651, 832, 906, 1060
BssT1I	CCWWGG	2 cut(s)	360, 990
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	6 cut(s)	342, 550, 602, 747, 843, 883
Bst6I	CTCTTC	1 cut(s)	275
BstBI	TTCGAA	2 cut(s)	191, 197
BstC8I	GCNNGC	1 cut(s)	916
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	119, 427
BstKTI	GATC	5 cut(s)	541, 654, 835, 909, 1063
BstMBI	GATC	5 cut(s)	538, 651, 832, 906, 1060
BstMWI	GCNNNNNNNGC	2 cut(s)	474, 506
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	344, 518
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	651, 832
BstXI	CCANNNNNNTGG	2 cut(s)	41, 367
BstYI	RGATCY	2 cut(s)	651, 832
BsuRI	GGCC	2 cut(s)	45, 1037
BtsCI	GGATG	2 cut(s)	119, 427
BtsI	GCAGTG	3 cut(s)	222, 516, 1024
BtsIMutI	CAGTG	4 cut(s)	222, 516, 607, 1024
BveI	ACCTGC	2 cut(s)	263, 517
Cac8I	GCNNGC	1 cut(s)	916
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	3 cut(s)	409, 587, 823
CviAII	CATG	4 cut(s)	47, 454, 638, 919
CviQI	GTAC	3 cut(s)	409, 587, 823
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	5 cut(s)	540, 653, 834, 908, 1062
DpnII	GATC	5 cut(s)	538, 651, 832, 906, 1060
DrdI	GACNNNNNNGTC	1 cut(s)	84
DseDI	GACNNNNNNGTC	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	2 cut(s)	360, 990
Eco47I	GGWCC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	731
EcoRI	GAATTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	360, 990
ErhI	CCWWGG	2 cut(s)	360, 990
FaeI	CATG	4 cut(s)	50, 457, 641, 922
FaqI	GGGAC	2 cut(s)	42, 821
FatI	CATG	4 cut(s)	46, 453, 637, 918
FbaI	TGATCA	2 cut(s)	906, 1060
Fnu4HI	GCNGC	2 cut(s)	333, 507
FokI	GGATG	2 cut(s)	126, 434
Fsp4HI	GCNGC	2 cut(s)	333, 507
FspBI	CTAG	1 cut(s)	779
GluI	GCNGC	2 cut(s)	333, 507
GsaI	CCCAGC	2 cut(s)	807, 1016
HaeIII	GGCC	2 cut(s)	45, 1037
HapII	CCGG	1 cut(s)	566
Hin1II	CATG	4 cut(s)	50, 457, 641, 922
HincII	GTYRAC	1 cut(s)	89
HindII	GTYRAC	1 cut(s)	89
HinfI	GANTC	4 cut(s)	55, 142, 166, 388
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	4 cut(s)	17, 541, 680, 934
Hpy166II	GTNNAC	2 cut(s)	89, 589
Hpy188I	TCNGA	5 cut(s)	54, 99, 141, 616, 756
Hpy188III	TCNNGA	2 cut(s)	764, 830
Hpy8I	GTNNAC	2 cut(s)	89, 589
HpyAV	CCTTC	3 cut(s)	150, 346, 673
HpyCH4III	ACNGT	6 cut(s)	342, 550, 602, 747, 843, 883
HpyCH4V	TGCA	7 cut(s)	4, 120, 215, 332, 526, 895, 983
HpyF10VI	GCNNNNNNNGC	2 cut(s)	474, 506
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	4 cut(s)	50, 457, 641, 922
Ksp22I	TGATCA	2 cut(s)	906, 1060
Kzo9I	GATC	5 cut(s)	538, 651, 832, 906, 1060
LmnI	GCTCC	3 cut(s)	207, 724, 1009
Lsp1109I	GCAGC	2 cut(s)	344, 518
LweI	GCATC	4 cut(s)	283, 513, 847, 1059
MaeI	CTAG	1 cut(s)	779
MaeIII	GTNAC	4 cut(s)	23, 714, 929, 1042
MalI	GATC	5 cut(s)	540, 653, 834, 908, 1062
MboI	GATC	5 cut(s)	538, 651, 832, 906, 1060
MboII	GAAGA	3 cut(s)	292, 438, 655
MflI	RGATCY	2 cut(s)	651, 832
MhlI	GDGCHC	1 cut(s)	881
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	8 cut(s)	161, 193, 202, 605, 629, 659, 948, 978
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	64, 136
MmeI	TCCRAC	3 cut(s)	234, 566, 656
MnlI	CCTC	7 cut(s)	105, 213, 314, 411, 715, 771, 804
Mox20I	TGGCCA	1 cut(s)	45
MroXI	GAANNNNTTC	1 cut(s)	683
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	2 cut(s)	126, 951
MslI	CAYNNNNRTG	2 cut(s)	923, 942
Msp20I	TGGCCA	1 cut(s)	45
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	393
Mva1269I	GAATGC	1 cut(s)	773
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	474, 506
NdeII	GATC	5 cut(s)	538, 651, 832, 906, 1060
NlaIII	CATG	4 cut(s)	50, 457, 641, 922
NlaIV	GGNNCC	4 cut(s)	358, 653, 726, 834
NmuCI	GTSAC	3 cut(s)	23, 714, 929
NspV	TTCGAA	2 cut(s)	191, 197
PaqCI	CACCTGC	2 cut(s)	263, 517
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PctI	GAATGC	1 cut(s)	773
PdmI	GAANNNNTTC	1 cut(s)	683
PfeI	GAWTC	2 cut(s)	166, 388
PkrI	GCNGC	2 cut(s)	334, 508
PleI	GAGTC	2 cut(s)	63, 136
PpsI	GAGTC	2 cut(s)	63, 136
Psp6I	CCWGG	1 cut(s)	391
PspFI	CCCAGC	2 cut(s)	803, 1012
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	4 cut(s)	358, 653, 726, 834
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	2 cut(s)	651, 832
RsaI	GTAC	3 cut(s)	410, 588, 824
RsaNI	GTAC	3 cut(s)	409, 587, 823
RseI	CAYNNNNRTG	2 cut(s)	923, 942
SaqAI	TTAA	2 cut(s)	126, 951
SatI	GCNGC	2 cut(s)	333, 507
Sau3AI	GATC	5 cut(s)	538, 651, 832, 906, 1060
Sau96I	GGNCC	1 cut(s)	222
SchI	GAGTC	2 cut(s)	64, 136
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	881
SfaNI	GCATC	4 cut(s)	283, 513, 847, 1059
SfuI	TTCGAA	2 cut(s)	191, 197
SinI	GGWCC	1 cut(s)	222
SmiMI	CAYNNNNRTG	2 cut(s)	923, 942
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	8 cut(s)	161, 193, 202, 605, 629, 659, 948, 978
SsiI	CCGC	1 cut(s)	860
SspMI	CTAG	1 cut(s)	779
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	2 cut(s)	360, 990
TaaI	ACNGT	6 cut(s)	342, 550, 602, 747, 843, 883
TaqI	TCGA	4 cut(s)	191, 197, 435, 583
TasI	AATT	8 cut(s)	161, 193, 202, 605, 629, 659, 948, 978
TatI	WGTACW	1 cut(s)	586
TfiI	GAWTC	2 cut(s)	166, 388
Tru1I	TTAA	2 cut(s)	126, 951
Tru9I	TTAA	2 cut(s)	126, 951
TscAI	CASTG	4 cut(s)	222, 516, 607, 1024
TseFI	GTSAC	3 cut(s)	23, 714, 929
TseI	GCWGC	2 cut(s)	332, 506
Tsp45I	GTSAC	3 cut(s)	23, 714, 929
TspDTI	ATGAA	2 cut(s)	654, 841
TspRI	CASTG	4 cut(s)	222, 516, 607, 1024
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	4 cut(s)	193, 605, 629, 659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
XmnI	GAANNNNTTC	1 cut(s)	683
XspI	CTAG	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.