MD12G1252200.v1.1

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
32155853 .. 32158936
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1252200.v1.1.491

Sequence Viewer

Length: 1089 bp
ATGCATACCATTTTTGTTTCTTGGGTTGTTCTAGGTCTGCTTGCTGCTTGTGCTGGCCGTCAAGCCGAGGCACGAGCTTTCTTTGTGTTCGGAGATTCATTGGTGGACAGCGGCAACAATGACTACTTGGCCACCACTGCCAGGGCTGACAACTACCCTTATGGCATAGATTATCCTACTCACCGACCCACCGGTCGTTTTTCGAATGGCCTTAACATACCAGATCTTATCAGCGAGCAAATTGGCTCAGAACCCACGTTGCCCTACTTGAGCCCACATCTCACTGGACAAAAACTACTCGTTGGTGCCAACTTTGCTTCTGCTGGGATTGGAATTCTCAATGACACTGGAATCCAGTTTCTCAACATAATCCGAATCTACAAACAACTGAAGTACTTTCAGCAATACCAGACTAGAGTGAATGCTTTAGTTGGACCTGAGCAGGCTCAGCGACTTGTCAACGAAGCACTTGTTCTGATTACCCTTGGAGGCAATGATTTTGTCAACAACTACTACTTGGTGCCCTTCTCTGCTAGATCTCGACAATTCTCTCTCCCGGACTATGTCGTCTACCTCATCTCCGAGTATCGCAAAGTTCTAGCGAGGCTGTATGAATTAGGAGCTCGTAAGGTTTTGGTGACAGGCACAGGGCCACTAGGGTGTGCTCCAGCAGAGTTGGCTCAGCGCAGCAGAAGAGGCGAATGTGCGGTGGAGCTGCAGCGAGCTGCTTCTTTATTTAACCCACAGCTAGTCGATATGATCAACAGCCTGAATGGCCAAATTGGCTCAGATGTATTTGTTGCTGCAAATGCATTTCAAATGCACATGGATTTTATCTCCAATCCTCAAGCTTATGGATTTGTGACTTCAAAGATAGCTTGCTGTGGCCAAGGACCCTACAATGGGATCGGACTCTGCACAATTGCCTCCAACTTGTGCCCAAATAGAGATTTGTACGCGTTTTGGGATGCATTCCATCCTTCTGAGAAGGCAAGCAGAATTATTGCGCAGCAAATCCTTACTGGGTCCAACAAGTACATGAATCCAATGAACCTCAGCACTATTTTGGCCTTGGACTCTAAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

363

Amino Acids

39.75

Weight (kDa)

8.1

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 28 - 339 6.6e-35 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010703)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 192, 566
Acc16I TGCGCA 1 cut(s) 1008
AccB1I GGYRCC 2 cut(s) 305, 520
AccI GTMKAC 1 cut(s) 570
AccII CGCG 1 cut(s) 959
AciI CCGC 2 cut(s) 111, 707
AclWI GGATC 1 cut(s) 914
AcoI YGGCCR 4 cut(s) 55, 129, 775, 886
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 410
AfaI GTAC 3 cut(s) 395, 956, 1037
AfiI CCNNNNNNNGG 3 cut(s) 141, 902, 903
AflIII ACRYGT 1 cut(s) 957
AgeI ACCGGT 1 cut(s) 191
AgsI TTSAA 2 cut(s) 818, 870
AjnI CCWGG 1 cut(s) 140
AleI CACNNNNGTG 1 cut(s) 658
AluBI AGCT 7 cut(s) 77, 623, 715, 725, 748, 851, 878
AluI AGCT 7 cut(s) 77, 623, 715, 725, 748, 851, 878
Alw21I GWGCWC 2 cut(s) 625, 667
AlwI GGATC 1 cut(s) 914
AoxI GGCC 7 cut(s) 55, 129, 208, 650, 775, 886, 1068
ApeKI GCWGC 7 cut(s) 44, 687, 715, 718, 725, 803, 1009
ApoI RAATTY 1 cut(s) 333
AsiGI ACCGGT 1 cut(s) 191
AspLEI GCGC 2 cut(s) 687, 1009
AspS9I GGNCC 4 cut(s) 434, 650, 893, 1026
AsuC2I CCSGG 1 cut(s) 557
AsuHPI GGTGA 2 cut(s) 173, 649
AsuII TTCGAA 1 cut(s) 203
AvaII GGWCC 3 cut(s) 434, 893, 1026
BaeGI GKGCMC 2 cut(s) 525, 941
BalI TGGCCA 3 cut(s) 131, 777, 888
BanI GGYRCC 2 cut(s) 305, 520
BanII GRGCYC 2 cut(s) 275, 625
BauI CACGAG 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 625, 667
BbvCI CCTCAGC 1 cut(s) 1055
BbvI GCAGC 7 cut(s) 31, 699, 702, 712, 730, 790, 1021
BccI CCATC 1 cut(s) 984
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 142
BclI TGATCA 1 cut(s) 759
BcnI CCSGG 1 cut(s) 557
BfaI CTAG 7 cut(s) 32, 414, 534, 599, 656, 749, 1087
BfmI CTRYAG 1 cut(s) 716
BglI GCCNNNNNGGC 2 cut(s) 774, 783
BglII AGATCT 2 cut(s) 223, 536
BisI GCNGC 8 cut(s) 45, 112, 688, 716, 719, 726, 804, 1010
BlpI GCTNAGC 2 cut(s) 447, 681
BlsI GCNGC 8 cut(s) 46, 113, 689, 717, 720, 727, 805, 1011
BmcAI AGTACT 1 cut(s) 395
Bme1390I CCNGG 2 cut(s) 142, 557
Bme18I GGWCC 3 cut(s) 434, 893, 1026
BmgT120I GGNCC 4 cut(s) 434, 650, 893, 1026
BmiI GGNNCC 4 cut(s) 307, 522, 895, 1027
BmrFI CCNGG 2 cut(s) 142, 557
BmrI ACTGGG 1 cut(s) 1032
BmsI GCATC 1 cut(s) 958
BmuI ACTGGG 1 cut(s) 1032
BpmI CTGGAG 1 cut(s) 651
Bpu10I CCTNAGC 2 cut(s) 438, 1055
Bpu1102I GCTNAGC 2 cut(s) 447, 681
Bpu14I TTCGAA 1 cut(s) 203
BpuEI CTTGAG 2 cut(s) 289, 831
BpuMI CCSGG 1 cut(s) 557
BsaJI CCNNGG 5 cut(s) 66, 141, 484, 889, 1071
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 563, 593
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 902, 903
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 4 cut(s) 289, 352, 355, 1027
Bse3DI GCAATG 1 cut(s) 499
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 5 cut(s) 66, 141, 484, 889, 1071
BseGI GGATG 2 cut(s) 973, 976
BseLI CCNNNNNNNGG 3 cut(s) 141, 902, 903
BseMI GCAATG 1 cut(s) 499
BseMII CTCAG 7 cut(s) 261, 429, 461, 695, 801, 975, 1069
BseNI ACTGG 4 cut(s) 289, 352, 355, 1027
BseSI GKGCMC 2 cut(s) 525, 941
BseXI GCAGC 7 cut(s) 31, 699, 702, 712, 730, 790, 1021
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 901
Bsh1236I CGCG 1 cut(s) 959
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 7 cut(s) 57, 131, 210, 652, 777, 888, 1070
BshNI GGYRCC 2 cut(s) 305, 520
BshTI ACCGGT 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 2 cut(s) 625, 667
BsiSI CCGG 2 cut(s) 192, 557
BslI CCNNNNNNNGG 3 cut(s) 141, 902, 903
BsmI GAATGC 2 cut(s) 427, 971
BsnI GGCC 7 cut(s) 57, 131, 210, 652, 777, 888, 1070
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 5 cut(s) 275, 525, 625, 667, 941
Bsp143I GATC 4 cut(s) 223, 536, 759, 906
Bsp1720I GCTNAGC 2 cut(s) 447, 681
BspACI CCGC 2 cut(s) 111, 707
BspANI GGCC 7 cut(s) 57, 131, 210, 652, 777, 888, 1070
BspCNI CTCAG 7 cut(s) 260, 430, 460, 694, 800, 976, 1068
BspFNI CGCG 1 cut(s) 959
BspLI GGNNCC 4 cut(s) 307, 522, 895, 1027
BspMAI CTGCAG 1 cut(s) 720
BspPI GGATC 1 cut(s) 914
BspT104I TTCGAA 1 cut(s) 203
BspT107I GGYRCC 2 cut(s) 305, 520
BsrDI GCAATG 1 cut(s) 499
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 4 cut(s) 289, 352, 355, 1027
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 5 cut(s) 66, 141, 484, 889, 1071
BssMI GATC 4 cut(s) 223, 536, 759, 906
BssSI CACGAG 1 cut(s) 72
BssT1I CCWWGG 3 cut(s) 484, 889, 1071
Bst2BI CACGAG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 688
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 7 cut(s) 42, 55, 236, 444, 723, 880, 994
BstDEI CTNAG 8 cut(s) 247, 438, 447, 681, 787, 984, 1055, 1080
BstF5I GGATG 2 cut(s) 973, 976
BstFNI CGCG 1 cut(s) 959
BstHHI GCGC 2 cut(s) 687, 1009
BstKTI GATC 4 cut(s) 226, 539, 762, 909
BstMBI GATC 4 cut(s) 223, 536, 759, 906
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 9 cut(s) 50, 137, 314, 448, 677, 696, 774, 783, 809
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 140, 555
BstSFI CTRYAG 1 cut(s) 716
BstSLI GKGCMC 2 cut(s) 525, 941
BstUI CGCG 1 cut(s) 959
BstV1I GCAGC 7 cut(s) 31, 699, 702, 712, 730, 790, 1021
BstX2I RGATCY 2 cut(s) 223, 536
BstYI RGATCY 2 cut(s) 223, 536
BsuRI GGCC 7 cut(s) 57, 131, 210, 652, 777, 888, 1070
BtsCI GGATG 2 cut(s) 973, 976
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 3 cut(s) 135, 282, 345
Cac8I GCNNGC 7 cut(s) 42, 55, 236, 444, 723, 880, 994
CfoI GCGC 2 cut(s) 687, 1009
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 4 cut(s) 434, 650, 893, 1026
Csp6I GTAC 3 cut(s) 394, 955, 1036
CspAI ACCGGT 1 cut(s) 191
CviAII CATG 2 cut(s) 826, 1039
CviQI GTAC 3 cut(s) 394, 955, 1036
DdeI CTNAG 8 cut(s) 247, 438, 447, 681, 787, 984, 1055, 1080
DpnI GATC 4 cut(s) 225, 538, 761, 908
DpnII GATC 4 cut(s) 223, 536, 759, 906
DrdI GACNNNNNNGTC 2 cut(s) 192, 566
DseDI GACNNNNNNGTC 2 cut(s) 192, 566
EaeI YGGCCR 4 cut(s) 55, 129, 775, 886
Eam1104I CTCTTC 1 cut(s) 688
EarI CTCTTC 1 cut(s) 688
Ecl136II GAGCTC 1 cut(s) 623
Eco130I CCWWGG 3 cut(s) 484, 889, 1071
Eco24I GRGCYC 2 cut(s) 275, 625
Eco47I GGWCC 3 cut(s) 434, 893, 1026
Eco53kI GAGCTC 1 cut(s) 623
Eco57I CTGAAG 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 623
EcoO109I RGGNCCY 1 cut(s) 893
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 3 cut(s) 484, 889, 1071
EcoT22I ATGCAT 3 cut(s) 6, 814, 973
EcoT38I GRGCYC 2 cut(s) 275, 625
ErhI CCWWGG 3 cut(s) 484, 889, 1071
FaeI CATG 2 cut(s) 829, 1042
FatI CATG 2 cut(s) 825, 1038
FbaI TGATCA 1 cut(s) 759
FblI GTMKAC 1 cut(s) 570
Fnu4HI GCNGC 8 cut(s) 45, 112, 688, 716, 719, 726, 804, 1010
FokI GGATG 2 cut(s) 963, 980
FriOI GRGCYC 2 cut(s) 275, 625
Fsp4HI GCNGC 8 cut(s) 45, 112, 688, 716, 719, 726, 804, 1010
FspBI CTAG 7 cut(s) 32, 414, 534, 599, 656, 749, 1087
FspI TGCGCA 1 cut(s) 1008
GlaI GCGC 2 cut(s) 686, 1008
GluI GCNGC 8 cut(s) 45, 112, 688, 716, 719, 726, 804, 1010
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 7 cut(s) 57, 131, 210, 652, 777, 888, 1070
HapII CCGG 2 cut(s) 192, 557
HhaI GCGC 2 cut(s) 687, 1009
Hin1II CATG 2 cut(s) 829, 1042
Hin6I GCGC 2 cut(s) 685, 1007
HinP1I GCGC 2 cut(s) 685, 1007
HincII GTYRAC 2 cut(s) 460, 505
HindII GTYRAC 2 cut(s) 460, 505
HindIII AAGCTT 1 cut(s) 849
HinfI GANTC 6 cut(s) 95, 351, 375, 912, 1042, 1076
HpaII CCGG 2 cut(s) 192, 557
HphI GGTGA 2 cut(s) 173, 649
Hpy166II GTNNAC 4 cut(s) 106, 460, 505, 571
Hpy188I TCNGA 8 cut(s) 92, 250, 374, 477, 583, 790, 911, 985
Hpy188III TCNNGA 1 cut(s) 540
Hpy8I GTNNAC 4 cut(s) 106, 460, 505, 571
HpyAV CCTTC 3 cut(s) 535, 982, 990
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 7 cut(s) 4, 718, 806, 812, 823, 918, 971
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 137, 314, 448, 677, 696, 774, 783, 809
HpyF3I CTNAG 8 cut(s) 247, 438, 447, 681, 787, 984, 1055, 1080
HpySE526I ACGT 1 cut(s) 257
Hsp92II CATG 2 cut(s) 829, 1042
HspAI GCGC 2 cut(s) 685, 1007
Ksp22I TGATCA 1 cut(s) 759
Kzo9I GATC 4 cut(s) 223, 536, 759, 906
LmnI GCTCC 3 cut(s) 620, 670, 712
Lsp1109I GCAGC 7 cut(s) 31, 699, 702, 712, 730, 790, 1021
LweI GCATC 1 cut(s) 958
MaeI CTAG 7 cut(s) 32, 414, 534, 599, 656, 749, 1087
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 2 cut(s) 637, 862
MalI GATC 4 cut(s) 225, 538, 761, 908
MboI GATC 4 cut(s) 223, 536, 759, 906
MboII GAAGA 1 cut(s) 705
MfeI CAATTG 1 cut(s) 921
MflI RGATCY 2 cut(s) 223, 536
MhlI GDGCHC 5 cut(s) 275, 525, 625, 667, 941
MlsI TGGCCA 3 cut(s) 131, 777, 888
MluCI AATT 7 cut(s) 240, 333, 545, 614, 780, 921, 999
MluI ACGCGT 1 cut(s) 957
MluNI TGGCCA 3 cut(s) 131, 777, 888
MlyI GAGTC 2 cut(s) 906, 1070
MmeI TCCRAC 3 cut(s) 412, 954, 1053
MnlI CCTC 8 cut(s) 61, 482, 584, 597, 689, 855, 937, 1064
Mox20I TGGCCA 3 cut(s) 131, 777, 888
Mph1103I ATGCAT 3 cut(s) 6, 814, 973
MscI TGGCCA 3 cut(s) 131, 777, 888
MseI TTAA 2 cut(s) 213, 738
MslI CAYNNNNRTG 1 cut(s) 658
Msp20I TGGCCA 3 cut(s) 131, 777, 888
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 2 cut(s) 192, 557
MspR9I CCNGG 2 cut(s) 142, 557
MunI CAATTG 1 cut(s) 921
Mva1269I GAATGC 2 cut(s) 427, 971
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 1 cut(s) 959
MwoI GCNNNNNNNGC 9 cut(s) 50, 137, 314, 448, 677, 696, 774, 783, 809
NciI CCSGG 1 cut(s) 557
NdeII GATC 4 cut(s) 223, 536, 759, 906
NlaIII CATG 2 cut(s) 829, 1042
NlaIV GGNNCC 4 cut(s) 307, 522, 895, 1027
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 2 cut(s) 637, 862
NsbI TGCGCA 1 cut(s) 1008
NsiI ATGCAT 3 cut(s) 6, 814, 973
NspV TTCGAA 1 cut(s) 203
OliI CACNNNNGTG 1 cut(s) 658
PctI GAATGC 2 cut(s) 427, 971
PfeI GAWTC 4 cut(s) 95, 351, 375, 1042
PflFI GACNNNGTC 1 cut(s) 563
PfoI TCCNGGA 1 cut(s) 555
PinAI ACCGGT 1 cut(s) 191
PkrI GCNGC 8 cut(s) 46, 113, 689, 717, 720, 727, 805, 1011
PleI GAGTC 2 cut(s) 906, 1070
PpsI GAGTC 2 cut(s) 906, 1070
PpuMI RGGWCCY 1 cut(s) 893
Psp124BI GAGCTC 1 cut(s) 625
Psp5II RGGWCCY 1 cut(s) 893
Psp6I CCWGG 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 4 cut(s) 307, 522, 895, 1027
PspPI GGNCC 4 cut(s) 434, 650, 893, 1026
PspPPI RGGWCCY 1 cut(s) 893
PstI CTGCAG 1 cut(s) 720
PsuI RGATCY 2 cut(s) 223, 536
PsyI GACNNNGTC 1 cut(s) 563
RsaI GTAC 3 cut(s) 395, 956, 1037
RsaNI GTAC 3 cut(s) 394, 955, 1036
RseI CAYNNNNRTG 1 cut(s) 658
SacI GAGCTC 1 cut(s) 625
SaqAI TTAA 2 cut(s) 213, 738
SatI GCNGC 8 cut(s) 45, 112, 688, 716, 719, 726, 804, 1010
Sau3AI GATC 4 cut(s) 223, 536, 759, 906
Sau96I GGNCC 4 cut(s) 434, 650, 893, 1026
ScaI AGTACT 1 cut(s) 395
SchI GAGTC 2 cut(s) 906, 1070
ScrFI CCNGG 2 cut(s) 142, 557
SduI GDGCHC 5 cut(s) 275, 525, 625, 667, 941
SfaNI GCATC 1 cut(s) 958
SfcI CTRYAG 1 cut(s) 716
SfuI TTCGAA 1 cut(s) 203
SinI GGWCC 3 cut(s) 434, 893, 1026
SmiMI CAYNNNNRTG 1 cut(s) 658
SmlI CTYRAG 2 cut(s) 268, 846
SmoI CTYRAG 2 cut(s) 268, 846
Sse9I AATT 7 cut(s) 240, 333, 545, 614, 780, 921, 999
SsiI CCGC 2 cut(s) 111, 707
SspMI CTAG 7 cut(s) 32, 414, 534, 599, 656, 749, 1087
SstI GAGCTC 1 cut(s) 625
StyD4I CCNGG 2 cut(s) 140, 555
StyI CCWWGG 3 cut(s) 484, 889, 1071
TaiI ACGT 1 cut(s) 260
TaqI TCGA 3 cut(s) 203, 541, 753
TasI AATT 7 cut(s) 240, 333, 545, 614, 780, 921, 999
TatI WGTACW 2 cut(s) 393, 1035
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 4 cut(s) 95, 351, 375, 1042
Tru1I TTAA 2 cut(s) 213, 738
Tru9I TTAA 2 cut(s) 213, 738
TscAI CASTG 3 cut(s) 142, 289, 352
TseFI GTSAC 2 cut(s) 637, 862
TseI GCWGC 7 cut(s) 44, 687, 715, 718, 725, 803, 1009
Tsp45I GTSAC 2 cut(s) 637, 862
TspDTI ATGAA 4 cut(s) 87, 627, 1055, 1064
TspRI CASTG 3 cut(s) 142, 289, 352
Tth111I GACNNNGTC 1 cut(s) 563
VpaK11BI GGWCC 3 cut(s) 434, 893, 1026
XapI RAATTY 1 cut(s) 333
XmiI GTMKAC 1 cut(s) 570
XspI CTAG 7 cut(s) 32, 414, 534, 599, 656, 749, 1087
ZrmI AGTACT 1 cut(s) 395
Zsp2I ATGCAT 3 cut(s) 6, 814, 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.