Rmu_sc0003116.1_g000011

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003116.1
Physical Location & Seq
Forward (+)
57680 .. 60305
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003116.1_g000011.1.cds

Sequence Viewer

Length: 1083 bp
atgttggctttttgggttgctttggtcctgctggttgcttgtgctggtcgtcaagccgaggcacgagcattctttgttttcggagattcgctggtggacaatggcaacaatgactacttggtcaccactgcccgggccgactcgtacccttatgggatcgactacccgactcacataccaaccggacggttttctaatggcctcaacataccagacctcatcagtgagtcaattgggtcagaacccacattgccatacttgagtcctcacctcactggacaaaacctacttgttggtgccaactttgcttctgctgggattggaatcctcaatgacactggaatccagtttcttaacataatcagaatcaccaagcaactggaatacttcgaacaataccagacaagggtgagtgccctaatcggacctgatcagactcaaagccttgtgaacggagccctggtccttataacccttggtggaaatgactttgtaaacaactactacttggttccctactctgctaggtctcgccaatactctctcccagactacgtcgtctacctcatctctgagtatcgcaaaatcctcaacaggctgtacgaactgggagcccgtcaagtcctggtcacaggcacaggaccactaggctgtgtccccgccgagcttgccatgcatagccgaaacggggagtgctccgtggagctccaacgcgctgcctcgctcttcaacccgcagctagtccaaatgatcagctcgctcaacagcgatctcgggtccaacgtcttcattgccgcaaacgcctaccaaatgcacatggatttcgttagtaaccccgctgcctacgggtttgtaacatcaaagatagcctgttgtggccaaggaccttacaatgggatcggactatgcacacccctttcgaacctgtgcccgaaccgagacttgtacgcgttttgggatccgttccatccttcggagaaggctaataggatcattgtgcagcaaatcctgactgggaccgaagagtacatgcaccccatgaacctcagtactatgttggccttggacaactctaggacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

360

Amino Acids

39.53

Weight (kDa)

5.21

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010703)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 470
AasI GACNNNNNNGTC 2 cut(s) 119, 557
AccB1I GGYRCC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 561
AccII CGCG 2 cut(s) 714, 950
AciI CCGC 4 cut(s) 660, 734, 795, 837
AclWI GGATC 5 cut(s) 164, 905, 953, 966, 998
AcoI YGGCCR 1 cut(s) 877
AfaI GTAC 5 cut(s) 146, 602, 947, 1028, 1051
AfiI CCNNNNNNNGG 5 cut(s) 132, 406, 688, 893, 973
AflIII ACRYGT 1 cut(s) 948
AgsI TTSAA 1 cut(s) 730
AjnI CCWGG 2 cut(s) 459, 624
AluBI AGCT 4 cut(s) 667, 706, 739, 756
AluI AGCT 4 cut(s) 667, 706, 739, 756
Alw21I GWGCWC 2 cut(s) 698, 708
Alw26I GTCTC 2 cut(s) 534, 933
AlwI GGATC 5 cut(s) 164, 905, 953, 966, 998
Ama87I CYCGRG 2 cut(s) 132, 773
AoxI GGCC 4 cut(s) 135, 199, 877, 1059
ApeKI GCWGC 4 cut(s) 716, 736, 839, 1000
AspLEI GCGC 1 cut(s) 716
AspS9I GGNCC 9 cut(s) 25, 135, 425, 463, 641, 777, 884, 1017, 1077
AsuC2I CCSGG 2 cut(s) 133, 134
AsuHPI GGTGA 4 cut(s) 115, 260, 361, 421
AsuII TTCGAA 2 cut(s) 390, 920
AvaI CYCGRG 2 cut(s) 132, 773
AvaII GGWCC 8 cut(s) 25, 425, 463, 641, 777, 884, 1017, 1077
BaeGI GKGCMC 2 cut(s) 418, 932
BalI TGGCCA 1 cut(s) 879
BamHI GGATCC 1 cut(s) 958
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 3 cut(s) 460, 616, 708
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 778
Bbv12I GWGCWC 2 cut(s) 698, 708
BbvI GCAGC 4 cut(s) 703, 748, 826, 1012
BccI CCATC 1 cut(s) 975
BciT130I CCWGG 2 cut(s) 461, 626
BclI TGATCA 2 cut(s) 430, 750
BcnI CCSGG 2 cut(s) 133, 134
BcoDI GTCTC 2 cut(s) 534, 933
BfaI CTAG 5 cut(s) 525, 647, 740, 1074, 1081
BisI GCNGC 5 cut(s) 717, 737, 795, 840, 1001
BlsI GCNGC 5 cut(s) 718, 738, 796, 841, 1002
BmcAI AGTACT 1 cut(s) 1051
Bme1390I CCNGG 4 cut(s) 133, 134, 461, 626
Bme18I GGWCC 8 cut(s) 25, 425, 463, 641, 777, 884, 1017, 1077
BmeT110I CYCGRG 2 cut(s) 132, 773
BmgT120I GGNCC 9 cut(s) 25, 135, 425, 463, 641, 777, 884, 1017, 1077
BmiI GGNNCC 7 cut(s) 298, 457, 513, 613, 778, 960, 1018
BmrFI CCNGG 4 cut(s) 133, 134, 461, 626
BmrI ACTGGG 2 cut(s) 617, 1023
BmuI ACTGGG 2 cut(s) 617, 1023
BpiI GAAGAC 1 cut(s) 778
Bpu14I TTCGAA 2 cut(s) 390, 920
BpuEI CTTGAG 1 cut(s) 280
BpuMI CCSGG 2 cut(s) 133, 134
BsaBI GATNNNNATC 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 534
BsaJI CCNNGG 7 cut(s) 57, 132, 459, 475, 699, 880, 1062
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 5 cut(s) 132, 406, 688, 893, 973
Bse1I ACTGG 6 cut(s) 280, 343, 346, 384, 612, 1018
Bse3DI GCAATG 2 cut(s) 248, 789
Bse8I GATNNNNATC 1 cut(s) 323
BseBI CCWGG 2 cut(s) 461, 626
BseDI CCNNGG 7 cut(s) 57, 132, 459, 475, 699, 880, 1062
BseGI GGATG 1 cut(s) 967
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 5 cut(s) 132, 406, 688, 893, 973
BseMI GCAATG 2 cut(s) 248, 789
BseMII CTCAG 2 cut(s) 564, 1060
BseNI ACTGG 6 cut(s) 280, 343, 346, 384, 612, 1018
BseSI GKGCMC 2 cut(s) 418, 932
BseXI GCAGC 4 cut(s) 703, 748, 826, 1012
BseYI CCCAGC 1 cut(s) 314
BsgI GTGCAG 1 cut(s) 1019
Bsh1236I CGCG 2 cut(s) 714, 950
BshFI GGCC 4 cut(s) 137, 201, 879, 1061
BshNI GGYRCC 1 cut(s) 296
BsiHKAI GWGCWC 2 cut(s) 698, 708
BsiHKCI CYCGRG 2 cut(s) 132, 773
BsiSI CCGG 2 cut(s) 133, 183
BslFI GGGAC 2 cut(s) 641, 1030
BslI CCNNNNNNNGG 5 cut(s) 132, 406, 688, 893, 973
BsmAI GTCTC 2 cut(s) 534, 933
BsmFI GGGAC 2 cut(s) 641, 1030
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 4 cut(s) 137, 201, 879, 1061
Bso31I GGTCTC 1 cut(s) 534
BsoBI CYCGRG 2 cut(s) 132, 773
Bsp119I TTCGAA 2 cut(s) 390, 920
Bsp1286I GDGCHC 6 cut(s) 418, 460, 616, 698, 708, 932
Bsp143I GATC 7 cut(s) 156, 430, 750, 769, 897, 958, 990
BspACI CCGC 4 cut(s) 660, 734, 795, 837
BspANI GGCC 4 cut(s) 137, 201, 879, 1061
BspCNI CTCAG 2 cut(s) 565, 1059
BspFNI CGCG 2 cut(s) 714, 950
BspLI GGNNCC 7 cut(s) 298, 457, 513, 613, 778, 960, 1018
BspPI GGATC 5 cut(s) 164, 905, 953, 966, 998
BspQI GCTCTTC 1 cut(s) 731
BspT104I TTCGAA 2 cut(s) 390, 920
BspT107I GGYRCC 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 534
BsrDI GCAATG 2 cut(s) 248, 789
BsrI ACTGG 6 cut(s) 280, 343, 346, 384, 612, 1018
BssECI CCNNGG 7 cut(s) 57, 132, 459, 475, 699, 880, 1062
BssMI GATC 7 cut(s) 156, 430, 750, 769, 897, 958, 990
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 3 cut(s) 475, 880, 1062
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 461, 626
Bst4CI ACNGT 1 cut(s) 189
Bst6I CTCTTC 2 cut(s) 731, 1017
BstBI TTCGAA 2 cut(s) 390, 920
BstC8I GCNNGC 2 cut(s) 669, 758
BstDEI CTNAG 2 cut(s) 573, 1046
BstDSI CCRYGG 1 cut(s) 699
BstEII GGTNACC 1 cut(s) 121
BstF5I GGATG 1 cut(s) 967
BstFNI CGCG 2 cut(s) 714, 950
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 7 cut(s) 159, 433, 753, 772, 900, 961, 993
BstMAI GTCTC 2 cut(s) 534, 933
BstMBI GATC 7 cut(s) 156, 430, 750, 769, 897, 958, 990
BstMWI GCNNNNNNNGC 4 cut(s) 305, 668, 673, 800
BstNI CCWGG 2 cut(s) 461, 626
BstNSI RCATGY 1 cut(s) 1033
BstPI GGTNACC 1 cut(s) 121
BstSCI CCNGG 4 cut(s) 131, 132, 459, 624
BstSLI GKGCMC 2 cut(s) 418, 932
BstUI CGCG 2 cut(s) 714, 950
BstV1I GCAGC 4 cut(s) 703, 748, 826, 1012
BstV2I GAAGAC 1 cut(s) 778
BstX2I RGATCY 1 cut(s) 958
BstXI CCANNNNNNTGG 1 cut(s) 379
BstYI RGATCY 1 cut(s) 958
BsuRI GGCC 4 cut(s) 137, 201, 879, 1061
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 1 cut(s) 967
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 4 cut(s) 126, 229, 273, 336
Cac8I GCNNGC 2 cut(s) 669, 758
CfoI GCGC 1 cut(s) 716
Cfr13I GGNCC 9 cut(s) 25, 135, 425, 463, 641, 777, 884, 1017, 1077
Cfr9I CCCGGG 1 cut(s) 132
Csp6I GTAC 5 cut(s) 145, 601, 946, 1027, 1050
CviAII CATG 4 cut(s) 673, 817, 1030, 1039
CviQI GTAC 5 cut(s) 145, 601, 946, 1027, 1050
DdeI CTNAG 2 cut(s) 573, 1046
DpnI GATC 7 cut(s) 158, 432, 752, 771, 899, 960, 992
DpnII GATC 7 cut(s) 156, 430, 750, 769, 897, 958, 990
DrdI GACNNNNNNGTC 2 cut(s) 119, 557
DseDI GACNNNNNNGTC 2 cut(s) 119, 557
EaeI YGGCCR 1 cut(s) 877
Eam1104I CTCTTC 2 cut(s) 731, 1017
EarI CTCTTC 2 cut(s) 731, 1017
Ecl136II GAGCTC 1 cut(s) 706
Eco130I CCWWGG 3 cut(s) 475, 880, 1062
Eco24I GRGCYC 3 cut(s) 460, 616, 708
Eco31I GGTCTC 1 cut(s) 534
Eco47I GGWCC 8 cut(s) 25, 425, 463, 641, 777, 884, 1017, 1077
Eco53kI GAGCTC 1 cut(s) 706
Eco88I CYCGRG 2 cut(s) 132, 773
Eco91I GGTNACC 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 706
EcoO109I RGGNCCY 2 cut(s) 884, 1077
EcoO65I GGTNACC 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 459, 624
EcoT14I CCWWGG 3 cut(s) 475, 880, 1062
EcoT22I ATGCAT 1 cut(s) 678
EcoT38I GRGCYC 3 cut(s) 460, 616, 708
ErhI CCWWGG 3 cut(s) 475, 880, 1062
FaeI CATG 4 cut(s) 676, 820, 1033, 1042
FaqI GGGAC 2 cut(s) 641, 1030
FatI CATG 4 cut(s) 672, 816, 1029, 1038
FauI CCCGC 3 cut(s) 667, 741, 844
FbaI TGATCA 2 cut(s) 430, 750
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 5 cut(s) 717, 737, 795, 840, 1001
FokI GGATG 1 cut(s) 954
FriOI GRGCYC 3 cut(s) 460, 616, 708
Fsp4HI GCNGC 5 cut(s) 717, 737, 795, 840, 1001
FspBI CTAG 5 cut(s) 525, 647, 740, 1074, 1081
GlaI GCGC 1 cut(s) 715
GluI GCNGC 5 cut(s) 717, 737, 795, 840, 1001
GsaI CCCAGC 1 cut(s) 318
HaeIII GGCC 4 cut(s) 137, 201, 879, 1061
HapII CCGG 2 cut(s) 133, 183
HhaI GCGC 1 cut(s) 716
Hin1II CATG 4 cut(s) 676, 820, 1033, 1042
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HinfI GANTC 9 cut(s) 86, 140, 169, 227, 262, 324, 342, 366, 436
HpaII CCGG 2 cut(s) 133, 183
HphI GGTGA 4 cut(s) 115, 260, 361, 421
Hpy166II GTNNAC 4 cut(s) 97, 451, 496, 562
Hpy188I TCNGA 8 cut(s) 83, 241, 365, 425, 435, 574, 902, 976
Hpy188III TCNNGA 1 cut(s) 1009
Hpy8I GTNNAC 4 cut(s) 97, 451, 496, 562
Hpy99I CGWCG 1 cut(s) 560
HpyAV CCTTC 2 cut(s) 973, 981
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 2 cut(s) 555, 783
HpyCH4V TGCA 5 cut(s) 676, 814, 909, 1000, 1033
HpyF10VI GCNNNNNNNGC 4 cut(s) 305, 668, 673, 800
HpyF3I CTNAG 2 cut(s) 573, 1046
HpySE526I ACGT 2 cut(s) 555, 783
Hsp92II CATG 4 cut(s) 676, 820, 1033, 1042
HspAI GCGC 1 cut(s) 714
Ksp22I TGATCA 2 cut(s) 430, 750
Kzo9I GATC 7 cut(s) 156, 430, 750, 769, 897, 958, 990
LguI GCTCTTC 1 cut(s) 731
LmnI GCTCC 5 cut(s) 455, 611, 701, 703, 711
Lsp1109I GCAGC 4 cut(s) 703, 748, 826, 1012
MaeI CTAG 5 cut(s) 525, 647, 740, 1074, 1081
MaeII ACGT 2 cut(s) 555, 783
MaeIII GTNAC 4 cut(s) 121, 628, 830, 853
MalI GATC 7 cut(s) 158, 432, 752, 771, 899, 960, 992
MboI GATC 7 cut(s) 156, 430, 750, 769, 897, 958, 990
MboII GAAGA 3 cut(s) 718, 778, 1034
MfeI CAATTG 1 cut(s) 231
MflI RGATCY 1 cut(s) 958
MhlI GDGCHC 6 cut(s) 418, 460, 616, 698, 708, 932
MlsI TGGCCA 1 cut(s) 879
MluCI AATT 1 cut(s) 231
MluI ACGCGT 1 cut(s) 948
MluNI TGGCCA 1 cut(s) 879
MlyI GAGTC 5 cut(s) 134, 163, 236, 271, 430
MmeI TCCRAC 2 cut(s) 733, 804
Mox20I TGGCCA 1 cut(s) 879
Mph1103I ATGCAT 1 cut(s) 678
MscI TGGCCA 1 cut(s) 879
MseI TTAA 1 cut(s) 354
Msp20I TGGCCA 1 cut(s) 879
MspA1I CMGCKG 1 cut(s) 839
MspI CCGG 2 cut(s) 133, 183
MspR9I CCNGG 4 cut(s) 133, 134, 461, 626
MunI CAATTG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 68
MvaI CCWGG 2 cut(s) 461, 626
MvnI CGCG 2 cut(s) 714, 950
MwoI GCNNNNNNNGC 4 cut(s) 305, 668, 673, 800
NciI CCSGG 2 cut(s) 133, 134
NdeII GATC 7 cut(s) 156, 430, 750, 769, 897, 958, 990
NlaIII CATG 4 cut(s) 676, 820, 1033, 1042
NlaIV GGNNCC 7 cut(s) 298, 457, 513, 613, 778, 960, 1018
NmeAIII GCCGAG 2 cut(s) 82, 688
NmuCI GTSAC 2 cut(s) 121, 628
NsiI ATGCAT 1 cut(s) 678
NspI RCATGY 1 cut(s) 1033
NspV TTCGAA 2 cut(s) 390, 920
PciSI GCTCTTC 1 cut(s) 731
PcsI WCGNNNNNNNCGW 1 cut(s) 780
PctI GAATGC 1 cut(s) 68
PfeI GAWTC 4 cut(s) 86, 324, 342, 366
PflFI GACNNNGTC 1 cut(s) 554
PkrI GCNGC 5 cut(s) 718, 738, 796, 841, 1002
PleI GAGTC 5 cut(s) 134, 163, 235, 270, 430
PpsI GAGTC 5 cut(s) 134, 163, 235, 270, 430
PpuMI RGGWCCY 2 cut(s) 884, 1077
PsiI TTATAA 1 cut(s) 470
Psp124BI GAGCTC 1 cut(s) 708
Psp5II RGGWCCY 2 cut(s) 884, 1077
Psp6I CCWGG 2 cut(s) 459, 624
PspEI GGTNACC 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 2 cut(s) 459, 624
PspN4I GGNNCC 7 cut(s) 298, 457, 513, 613, 778, 960, 1018
PspPI GGNCC 9 cut(s) 25, 135, 425, 463, 641, 777, 884, 1017, 1077
PspPPI RGGWCCY 2 cut(s) 884, 1077
PsuI RGATCY 1 cut(s) 958
PsyI GACNNNGTC 1 cut(s) 554
RsaI GTAC 5 cut(s) 146, 602, 947, 1028, 1051
RsaNI GTAC 5 cut(s) 145, 601, 946, 1027, 1050
SacI GAGCTC 1 cut(s) 708
SapI GCTCTTC 1 cut(s) 731
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 5 cut(s) 717, 737, 795, 840, 1001
Sau3AI GATC 7 cut(s) 156, 430, 750, 769, 897, 958, 990
Sau96I GGNCC 9 cut(s) 25, 135, 425, 463, 641, 777, 884, 1017, 1077
ScaI AGTACT 1 cut(s) 1051
SchI GAGTC 5 cut(s) 134, 163, 236, 271, 430
ScrFI CCNGG 4 cut(s) 133, 134, 461, 626
SduI GDGCHC 6 cut(s) 418, 460, 616, 698, 708, 932
SfuI TTCGAA 2 cut(s) 390, 920
SinI GGWCC 8 cut(s) 25, 425, 463, 641, 777, 884, 1017, 1077
SmaI CCCGGG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
SrfI GCCCGGGC 1 cut(s) 134
Sse9I AATT 1 cut(s) 231
SsiI CCGC 4 cut(s) 660, 734, 795, 837
SspMI CTAG 5 cut(s) 525, 647, 740, 1074, 1081
SstI GAGCTC 1 cut(s) 708
StyD4I CCNGG 4 cut(s) 131, 132, 459, 624
StyI CCWWGG 3 cut(s) 475, 880, 1062
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 2 cut(s) 558, 786
TaqI TCGA 3 cut(s) 159, 390, 920
TaqII GACCGA 1 cut(s) 1034
TasI AATT 1 cut(s) 231
TatI WGTACW 2 cut(s) 1026, 1049
TauI GCSGC 1 cut(s) 797
TfiI GAWTC 4 cut(s) 86, 324, 342, 366
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 4 cut(s) 133, 229, 280, 343
TseFI GTSAC 2 cut(s) 121, 628
TseI GCWGC 4 cut(s) 716, 736, 839, 1000
Tsp45I GTSAC 2 cut(s) 121, 628
TspDTI ATGAA 2 cut(s) 778, 1055
TspGWI ACGGA 3 cut(s) 468, 688, 951
TspMI CCCGGG 1 cut(s) 132
TspRI CASTG 4 cut(s) 133, 229, 280, 343
Tth111I GACNNNGTC 1 cut(s) 554
VpaK11BI GGWCC 8 cut(s) 25, 425, 463, 641, 777, 884, 1017, 1077
XceI RCATGY 1 cut(s) 1033
XmaI CCCGGG 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 561
XspI CTAG 5 cut(s) 525, 647, 740, 1074, 1081
ZrmI AGTACT 1 cut(s) 1051
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.