Prupe.6G354100_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
30115222 .. 30117945
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G354100.1

Sequence Viewer

Length: 1092 bp
ATGCATAGCATTTTTGCTTCTTGGGTAATTATCCTAGGCCTGCTCGGTGCTTGTGCTAGCCGTCGGGCTGAGGCACGGGCATTCTTCGTTTTCGGAGATTCTCTGGTGGACAATGGCAACAATGACTACTTGGCCACCACTGCCCGGGCAGACTCTTACCCTTATGGCATAGATTATCCAACTCACAGACCCACCGGCCGTTTTTCTAATGGCCTTAACATACCAGACATTATCAGTGAGCAACTTGGCTCAGAACCCACATTGCCATATTTGAGCCCTCACCTCACTGGACAAAACCTACTTGTCGGTGCTAACTTTGCTTCTGCTGGGATTGGAATTCTCAACGACACAGGGATCCAGTTTCTCAATATAATCCGAATCTTCAAGCAATTGGAATATTTCGAGCAATACCAGACAAGGGTGGCTGCCCTAGTTGGACCTGAACAAACTGAACGACTTGTTAACCAAGCACTTGTTCTTATTACCCTTGGTGGCAATGATTTTGTCAACAACTACTACTTGGTGCCCTTCTCTGCTAGATCTCGCCAATTCTCTCTGCCAGACTATGTTGTGTACCTCATTTCCGAGTATCGCAAAGTTCTAGCGAGGCTATATGAATTAGGAGCTCGGAGGGTTTTGGTGACAGGAACAGGACCACTAGGGTGTGTTCCTGCAGAATTGGCTCAGCATAGCAGAGCCGGTGAATGCTCGGTTGAGCTGGAGCGAGCTGCTTCTTTGTTCAACCCACAACTCGTCCAAATGATCAATGGTCTCAACAGCCAGCTTGGCTCAGATGTCTTTGTTGCTGCAAATGCATATGAAATGCACATGGATTTTATTTCTAACCCTCGAGCTTATGGATTTGTGACTTCAAAGATAGCATGCTGTGGGCAAGGGCCCTACAATGGGATTGGGCTATGCACAATGGTCTCCAACTTGTGCCCAAACAGAGATTTGTACGCGTTTTGGGATGCATTCCATCCCTCCGAGAAGGCCAACAGAATCATTGCGCAGCAAATCCTGACAGGGTCCAACAAGTACATGAACCCAATGAATCTCAGTACTATTTTGGCCTTGGACTCTAGGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

364

Amino Acids

39.97

Weight (kDa)

6.08

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010703)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1011
AccB1I GGYRCC 1 cut(s) 523
AccII CGCG 1 cut(s) 962
AclWI GGATC 2 cut(s) 349, 362
AcoI YGGCCR 2 cut(s) 132, 196
AcsI RAATTY 1 cut(s) 336
AfaI GTAC 4 cut(s) 575, 959, 1040, 1063
AfiI CCNNNNNNNGG 4 cut(s) 144, 418, 905, 906
AflIII ACRYGT 1 cut(s) 960
AgsI TTSAA 3 cut(s) 385, 742, 873
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AleI CACNNNNGTG 1 cut(s) 661
AluBI AGCT 5 cut(s) 626, 718, 728, 784, 854
AluI AGCT 5 cut(s) 626, 718, 728, 784, 854
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 2 cut(s) 776, 934
AlwI GGATC 2 cut(s) 349, 362
Ama87I CYCGRG 2 cut(s) 144, 849
AoxI GGCC 7 cut(s) 37, 132, 196, 211, 896, 993, 1071
ApaI GGGCCC 1 cut(s) 900
ApeKI GCWGC 4 cut(s) 425, 728, 806, 1012
ApoI RAATTY 1 cut(s) 336
AspA2I CCTAGG 1 cut(s) 34
AspLEI GCGC 1 cut(s) 1012
AspS9I GGNCC 6 cut(s) 437, 653, 896, 897, 1029, 1086
AsuC2I CCSGG 2 cut(s) 145, 146
AsuHPI GGTGA 3 cut(s) 272, 652, 713
AsuNHI GCTAGC 1 cut(s) 56
AvaI CYCGRG 2 cut(s) 144, 849
AvaII GGWCC 4 cut(s) 437, 653, 1029, 1086
AvrII CCTAGG 1 cut(s) 34
BaeGI GKGCMC 3 cut(s) 528, 900, 944
BalI TGGCCA 1 cut(s) 134
BamHI GGATCC 1 cut(s) 354
BanI GGYRCC 1 cut(s) 523
BanII GRGCYC 3 cut(s) 278, 628, 900
Bbv12I GWGCWC 1 cut(s) 628
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 4 cut(s) 412, 715, 793, 1024
BccI CCATC 1 cut(s) 987
BceAI ACGGC 2 cut(s) 45, 183
BclI TGATCA 1 cut(s) 762
BcnI CCSGG 2 cut(s) 145, 146
BcoDI GTCTC 2 cut(s) 776, 934
BfaI CTAG 8 cut(s) 35, 57, 431, 537, 602, 659, 1083, 1090
BfmI CTRYAG 1 cut(s) 672
BglI GCCNNNNNGGC 1 cut(s) 786
BglII AGATCT 1 cut(s) 539
BisI GCNGC 4 cut(s) 426, 729, 807, 1013
BlnI CCTAGG 1 cut(s) 34
BlpI GCTNAGC 1 cut(s) 684
BlsI GCNGC 4 cut(s) 427, 730, 808, 1014
BmcAI AGTACT 1 cut(s) 1063
Bme1390I CCNGG 2 cut(s) 145, 146
Bme18I GGWCC 4 cut(s) 437, 653, 1029, 1086
BmeT110I CYCGRG 2 cut(s) 144, 849
BmgT120I GGNCC 6 cut(s) 437, 653, 896, 897, 1029, 1086
BmiI GGNNCC 4 cut(s) 356, 525, 898, 1030
BmrFI CCNGG 2 cut(s) 145, 146
BmsI GCATC 1 cut(s) 961
BmtI GCTAGC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 740
Bpu10I CCTNAGC 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 684
BpuMI CCSGG 2 cut(s) 145, 146
BsaI GGTCTC 2 cut(s) 776, 934
BsaJI CCNNGG 4 cut(s) 34, 144, 487, 1074
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 418, 905, 906
Bse118I RCCGGY 2 cut(s) 194, 698
Bse1I ACTGG 2 cut(s) 292, 358
Bse3DI GCAATG 3 cut(s) 260, 502, 1005
BseDI CCNNGG 4 cut(s) 34, 144, 487, 1074
BseGI GGATG 2 cut(s) 976, 979
BseLI CCNNNNNNNGG 4 cut(s) 144, 418, 905, 906
BseMI GCAATG 3 cut(s) 260, 502, 1005
BseMII CTCAG 5 cut(s) 60, 264, 698, 804, 1072
BseNI ACTGG 2 cut(s) 292, 358
BseSI GKGCMC 3 cut(s) 528, 900, 944
BseX3I CGGCCG 1 cut(s) 196
BseXI GCAGC 4 cut(s) 412, 715, 793, 1024
BseYI CCCAGC 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 962
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 7 cut(s) 39, 134, 198, 213, 898, 995, 1073
BshNI GGYRCC 1 cut(s) 523
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 628
BsiHKCI CYCGRG 2 cut(s) 144, 849
BsiSI CCGG 3 cut(s) 145, 195, 699
BslI CCNNNNNNNGG 4 cut(s) 144, 418, 905, 906
BsmAI GTCTC 2 cut(s) 776, 934
BsmI GAATGC 3 cut(s) 80, 710, 974
BsnI GGCC 7 cut(s) 39, 134, 198, 213, 898, 995, 1073
Bso31I GGTCTC 2 cut(s) 776, 934
BsoBI CYCGRG 2 cut(s) 144, 849
Bsp120I GGGCCC 1 cut(s) 896
Bsp1286I GDGCHC 5 cut(s) 278, 528, 628, 900, 944
Bsp143I GATC 3 cut(s) 354, 539, 762
Bsp1720I GCTNAGC 1 cut(s) 684
BspANI GGCC 7 cut(s) 39, 134, 198, 213, 898, 995, 1073
BspCNI CTCAG 5 cut(s) 61, 263, 697, 803, 1071
BspFNI CGCG 1 cut(s) 962
BspLI GGNNCC 4 cut(s) 356, 525, 898, 1030
BspMAI CTGCAG 1 cut(s) 676
BspOI GCTAGC 1 cut(s) 60
BspPI GGATC 2 cut(s) 349, 362
BspT107I GGYRCC 1 cut(s) 523
BspTNI GGTCTC 2 cut(s) 776, 934
BsrDI GCAATG 3 cut(s) 260, 502, 1005
BsrFI RCCGGY 2 cut(s) 194, 698
BsrI ACTGG 2 cut(s) 292, 358
BssAI RCCGGY 2 cut(s) 194, 698
BssECI CCNNGG 4 cut(s) 34, 144, 487, 1074
BssMI GATC 3 cut(s) 354, 539, 762
BssT1I CCWWGG 3 cut(s) 34, 487, 1074
BstC8I GCNNGC 5 cut(s) 41, 58, 726, 782, 883
BstDEI CTNAG 5 cut(s) 69, 250, 684, 790, 1058
BstF5I GGATG 2 cut(s) 976, 979
BstFNI CGCG 1 cut(s) 962
BstHHI GCGC 1 cut(s) 1012
BstKTI GATC 3 cut(s) 357, 542, 765
BstMAI GTCTC 2 cut(s) 776, 934
BstMBI GATC 3 cut(s) 354, 539, 762
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 5 cut(s) 140, 317, 680, 786, 812
BstNSI RCATGY 1 cut(s) 885
BstSCI CCNGG 2 cut(s) 143, 144
BstSFI CTRYAG 1 cut(s) 672
BstSLI GKGCMC 3 cut(s) 528, 900, 944
BstUI CGCG 1 cut(s) 962
BstV1I GCAGC 4 cut(s) 412, 715, 793, 1024
BstX2I RGATCY 2 cut(s) 354, 539
BstYI RGATCY 2 cut(s) 354, 539
BstZI CGGCCG 1 cut(s) 196
BsuRI GGCC 7 cut(s) 39, 134, 198, 213, 898, 995, 1073
BtsCI GGATG 2 cut(s) 976, 979
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 3 cut(s) 138, 241, 285
Cac8I GCNNGC 5 cut(s) 41, 58, 726, 782, 883
CfoI GCGC 1 cut(s) 1012
Cfr10I RCCGGY 2 cut(s) 194, 698
Cfr13I GGNCC 6 cut(s) 437, 653, 896, 897, 1029, 1086
Cfr9I CCCGGG 1 cut(s) 144
Csp6I GTAC 4 cut(s) 574, 958, 1039, 1062
CviAII CATG 3 cut(s) 829, 882, 1042
CviQI GTAC 4 cut(s) 574, 958, 1039, 1062
DdeI CTNAG 5 cut(s) 69, 250, 684, 790, 1058
DpnI GATC 3 cut(s) 356, 541, 764
DpnII GATC 3 cut(s) 354, 539, 762
EaeI YGGCCR 2 cut(s) 132, 196
EagI CGGCCG 1 cut(s) 196
Ecl136II GAGCTC 1 cut(s) 626
EclXI CGGCCG 1 cut(s) 196
Eco130I CCWWGG 3 cut(s) 34, 487, 1074
Eco147I AGGCCT 1 cut(s) 39
Eco24I GRGCYC 3 cut(s) 278, 628, 900
Eco31I GGTCTC 2 cut(s) 776, 934
Eco47I GGWCC 4 cut(s) 437, 653, 1029, 1086
Eco52I CGGCCG 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 626
Eco88I CYCGRG 2 cut(s) 144, 849
EcoICRI GAGCTC 1 cut(s) 626
EcoO109I RGGNCCY 3 cut(s) 896, 897, 1086
EcoRI GAATTC 1 cut(s) 336
EcoT14I CCWWGG 3 cut(s) 34, 487, 1074
EcoT22I ATGCAT 3 cut(s) 6, 817, 976
EcoT38I GRGCYC 3 cut(s) 278, 628, 900
ErhI CCWWGG 3 cut(s) 34, 487, 1074
FaeI CATG 3 cut(s) 832, 885, 1045
FatI CATG 3 cut(s) 828, 881, 1041
FauNDI CATATG 1 cut(s) 817
FbaI TGATCA 1 cut(s) 762
Fnu4HI GCNGC 4 cut(s) 426, 729, 807, 1013
FokI GGATG 2 cut(s) 966, 983
FriOI GRGCYC 3 cut(s) 278, 628, 900
Fsp4HI GCNGC 4 cut(s) 426, 729, 807, 1013
FspBI CTAG 8 cut(s) 35, 57, 431, 537, 602, 659, 1083, 1090
FspI TGCGCA 1 cut(s) 1011
GlaI GCGC 1 cut(s) 1011
GluI GCNGC 4 cut(s) 426, 729, 807, 1013
GsaI CCCAGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 740
HaeIII GGCC 7 cut(s) 39, 134, 198, 213, 898, 995, 1073
HapII CCGG 3 cut(s) 145, 195, 699
HhaI GCGC 1 cut(s) 1012
Hin1II CATG 3 cut(s) 832, 885, 1045
Hin6I GCGC 1 cut(s) 1010
HinP1I GCGC 1 cut(s) 1010
HincII GTYRAC 2 cut(s) 463, 508
HindII GTYRAC 2 cut(s) 463, 508
HinfI GANTC 6 cut(s) 98, 152, 378, 1002, 1054, 1079
HpaI GTTAAC 1 cut(s) 463
HpaII CCGG 3 cut(s) 145, 195, 699
HphI GGTGA 3 cut(s) 272, 652, 713
Hpy166II GTNNAC 4 cut(s) 109, 463, 508, 574
Hpy188I TCNGA 7 cut(s) 95, 253, 377, 586, 630, 793, 988
Hpy188III TCNNGA 1 cut(s) 1021
Hpy8I GTNNAC 4 cut(s) 109, 463, 508, 574
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 538, 985
HpyCH4V TGCA 7 cut(s) 4, 674, 809, 815, 826, 921, 974
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 317, 680, 786, 812
HpyF3I CTNAG 5 cut(s) 69, 250, 684, 790, 1058
Hsp92II CATG 3 cut(s) 832, 885, 1045
HspAI GCGC 1 cut(s) 1010
Ksp22I TGATCA 1 cut(s) 762
KspAI GTTAAC 1 cut(s) 463
Kzo9I GATC 3 cut(s) 354, 539, 762
LmnI GCTCC 2 cut(s) 623, 721
Lsp1109I GCAGC 4 cut(s) 412, 715, 793, 1024
LweI GCATC 1 cut(s) 961
MaeI CTAG 8 cut(s) 35, 57, 431, 537, 602, 659, 1083, 1090
MaeIII GTNAC 2 cut(s) 640, 865
MalI GATC 3 cut(s) 356, 541, 764
MboI GATC 3 cut(s) 354, 539, 762
MboII GAAGA 2 cut(s) 76, 373
MfeI CAATTG 1 cut(s) 389
MflI RGATCY 2 cut(s) 354, 539
MhlI GDGCHC 5 cut(s) 278, 528, 628, 900, 944
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 6 cut(s) 27, 336, 389, 548, 617, 677
MluI ACGCGT 1 cut(s) 960
MluNI TGGCCA 1 cut(s) 134
MlyI GAGTC 2 cut(s) 146, 1073
MmeI TCCRAC 4 cut(s) 203, 415, 957, 1056
MnlI CCTC 8 cut(s) 64, 288, 293, 587, 600, 624, 858, 994
Mox20I TGGCCA 1 cut(s) 134
Mph1103I ATGCAT 3 cut(s) 6, 817, 976
MscI TGGCCA 1 cut(s) 134
MseI TTAA 2 cut(s) 216, 462
MslI CAYNNNNRTG 1 cut(s) 661
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 3 cut(s) 145, 195, 699
MspR9I CCNGG 2 cut(s) 145, 146
MunI CAATTG 1 cut(s) 389
Mva1269I GAATGC 3 cut(s) 80, 710, 974
MvnI CGCG 1 cut(s) 962
MwoI GCNNNNNNNGC 5 cut(s) 140, 317, 680, 786, 812
NciI CCSGG 2 cut(s) 145, 146
NdeI CATATG 1 cut(s) 817
NdeII GATC 3 cut(s) 354, 539, 762
NheI GCTAGC 1 cut(s) 56
NlaIII CATG 3 cut(s) 832, 885, 1045
NlaIV GGNNCC 4 cut(s) 356, 525, 898, 1030
NmuCI GTSAC 2 cut(s) 640, 865
NsbI TGCGCA 1 cut(s) 1011
NsiI ATGCAT 3 cut(s) 6, 817, 976
NspI RCATGY 1 cut(s) 885
OliI CACNNNNGTG 1 cut(s) 661
PaeI GCATGC 1 cut(s) 885
PaeR7I CTCGAG 1 cut(s) 849
PceI AGGCCT 1 cut(s) 39
PctI GAATGC 3 cut(s) 80, 710, 974
PfeI GAWTC 4 cut(s) 98, 378, 1002, 1054
PflFI GACNNNGTC 1 cut(s) 1027
PkrI GCNGC 4 cut(s) 427, 730, 808, 1014
PleI GAGTC 2 cut(s) 146, 1073
PpsI GAGTC 2 cut(s) 146, 1073
PpuMI RGGWCCY 1 cut(s) 1086
Psp124BI GAGCTC 1 cut(s) 628
Psp5II RGGWCCY 1 cut(s) 1086
PspFI CCCAGC 1 cut(s) 326
PspN4I GGNNCC 4 cut(s) 356, 525, 898, 1030
PspOMI GGGCCC 1 cut(s) 896
PspPI GGNCC 6 cut(s) 437, 653, 896, 897, 1029, 1086
PspPPI RGGWCCY 1 cut(s) 1086
PspXI VCTCGAGB 1 cut(s) 849
PstI CTGCAG 1 cut(s) 676
PsuI RGATCY 2 cut(s) 354, 539
PsyI GACNNNGTC 1 cut(s) 1027
RsaI GTAC 4 cut(s) 575, 959, 1040, 1063
RsaNI GTAC 4 cut(s) 574, 958, 1039, 1062
RseI CAYNNNNRTG 1 cut(s) 661
SacI GAGCTC 1 cut(s) 628
SaqAI TTAA 2 cut(s) 216, 462
SatI GCNGC 4 cut(s) 426, 729, 807, 1013
Sau3AI GATC 3 cut(s) 354, 539, 762
Sau96I GGNCC 6 cut(s) 437, 653, 896, 897, 1029, 1086
ScaI AGTACT 1 cut(s) 1063
SchI GAGTC 2 cut(s) 146, 1073
ScrFI CCNGG 2 cut(s) 145, 146
SduI GDGCHC 5 cut(s) 278, 528, 628, 900, 944
SfaNI GCATC 1 cut(s) 961
SfcI CTRYAG 1 cut(s) 672
Sfr274I CTCGAG 1 cut(s) 849
SinI GGWCC 4 cut(s) 437, 653, 1029, 1086
SlaI CTCGAG 1 cut(s) 849
SmaI CCCGGG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 661
SmlI CTYRAG 1 cut(s) 849
SmoI CTYRAG 1 cut(s) 849
SphI GCATGC 1 cut(s) 885
SrfI GCCCGGGC 1 cut(s) 146
Sse9I AATT 6 cut(s) 27, 336, 389, 548, 617, 677
SseBI AGGCCT 1 cut(s) 39
SspI AATATT 1 cut(s) 398
SspMI CTAG 8 cut(s) 35, 57, 431, 537, 602, 659, 1083, 1090
SstI GAGCTC 1 cut(s) 628
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 2 cut(s) 143, 144
StyI CCWWGG 3 cut(s) 34, 487, 1074
TaqI TCGA 2 cut(s) 402, 850
TasI AATT 6 cut(s) 27, 336, 389, 548, 617, 677
TatI WGTACW 2 cut(s) 1038, 1061
TfiI GAWTC 4 cut(s) 98, 378, 1002, 1054
Tru1I TTAA 2 cut(s) 216, 462
Tru9I TTAA 2 cut(s) 216, 462
TscAI CASTG 3 cut(s) 145, 241, 292
TseFI GTSAC 2 cut(s) 640, 865
TseI GCWGC 4 cut(s) 425, 728, 806, 1012
Tsp45I GTSAC 2 cut(s) 640, 865
TspDTI ATGAA 4 cut(s) 630, 834, 1058, 1067
TspMI CCCGGG 1 cut(s) 144
TspRI CASTG 3 cut(s) 145, 241, 292
Tth111I GACNNNGTC 1 cut(s) 1027
VpaK11BI GGWCC 4 cut(s) 437, 653, 1029, 1086
XapI RAATTY 1 cut(s) 336
XceI RCATGY 1 cut(s) 885
XcmI CCANNNNNNNNNTGG 1 cut(s) 764
XhoI CTCGAG 1 cut(s) 849
XmaI CCCGGG 1 cut(s) 144
XmaJI CCTAGG 1 cut(s) 34
XspI CTAG 8 cut(s) 35, 57, 431, 537, 602, 659, 1083, 1090
ZrmI AGTACT 1 cut(s) 1063
Zsp2I ATGCAT 3 cut(s) 6, 817, 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.