Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002956

Physical Location & Seq

Genomic Coordinates Forward (+)

492101 .. 495378

Gene Structure 3278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1007900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGACTCCCGGAATGCCTGGAACTCCCAGGACACCTGGCCTCCCTGGAATAGCTCACTCAGTGCAAATATCTTTTAATCCGACTGCACCATCTGCACGTATTGATTCTTCTTCAGTAGCCCTTAGACCAAACATGCAAGCAGTACCTGTTGCGTCATCAGCAGTTCACCCACATGTAGGTCCTCCTTACCCATCTTTATCTGCTATGGGTGCTCCCTGGCTTCCATCCCCACAGATAGGAGGCTTACCTAGGCCACCGTTTTTGCCATATCCTGCTGCCTTTCCTGGTCCCTTTCCTTTGCCTGTACATGTTATGCCTCTCTCTTCTGTTCCTTTACCTGATTCTCAGCCTCCTGGTGTCACTCCTGTGGGAAATACTGTAGCAAATTCTTTGTCTTCCGTTGGTTCTCGTCATCAGTTGGCAGGGTCTTCAGGGATGCAGAAAGAATTACCTCATCCTGGCGTTGGTACCGATGGTAGAGCTGTTGTCAATGAACAGTTGGATGCCTGGACTGCCCACAAGACAGAGACAGGTGTTGTATACTATTATAATGCTTTGACCGGTGAATCAACTTGTGATAAGCCTCCTGGATTTAGGGAGGAGCCTGGTAAGGTTTCTATGCAGCCAACTCCAGTTTCAACGGTGAATTTGACTGGAACTGATTGGGTATTAGTCACAACCAGTGATGGGAAAAAGTTTTACCATAACAGCAAAACCAAGGTAAGTAGCTGGCAGATCCCAGATGAAGTGATTGAATTGAGAAATAAACAGGATAGTGACGTGCCAAAAGAACATACAATATCAGTGCCAAATAATAATTTAATGATTGAAAAGGGATCTGCACCAGTTAGTTTGAGTGCTCCAGCCATTAACACGGGTGGTCGTGAAGCCATGCCTTTTAAACCCTCAGTTGTGCAGGGAACATCTTCTGCACTTGATCTGATTAAAAGGAAGTTGCAGGATCCTGTTACGTCTTCGCCAATTTCAGCACCATCAGAATCAAATGGTGCAAGAGGAGTTGAGAGTACACCTAAGGGCCAGCAAAGTGAGAATATCGAAGATAAGCTAAAAGACACTAATGGAGATGGAAACTTGTCTGATTCCTCATCTGATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0001085 GO:0001103 GO:0003674 GO:0003712 GO:0003713 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 ko04212 map03040 map04212

Pfam Domains

Protein Families

FF WW

Protein Analysis

373

Amino Acids

38.97

Weight (kDa)

6.14

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	169 - 195	4.1e-08	WW domain
WW_TCERG1	PF23517	209 - 252	8.4e-10	TCERG1 WW domain
WW	PF00397	220 - 247	5.2e-07	WW domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19840
fragaria_vesca	FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700
malus_domestica	MD13G1007900.v1.1 MD13G1008000.v1.1 MD16G1000200.v1.1
prunus_persica	Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1
pyrus_communis	pycom13g00650 pycom16g00500 pycom16g00510 pycom16g00520
rosa_chinensis	RchiOBHm_Chr4g0446421
rosa_laevigata	RLG00000005662
rosa_multiflora	Rmu_co8175444.1_g000001 Rmu_sc0008360.1_g000005 Rmu_sc0018208.1_g000001 Rmu_sc0025430.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386860
rosa_rugosa	Rorug04G0371200
rosa_samantha	Rh4AG432800 Rh4BG441900 Rh4CG459300 Rh4DG440700
rosa_wichuraiana	Rw4G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	467
AccI	GTMKAC	1 cut(s)	540
AclWI	GGATC	4 cut(s)	730, 844, 956, 969
AcsI	RAATTY	2 cut(s)	385, 646
AcuI	CTGAAG	2 cut(s)	96, 414
AdeI	CACNNNGTG	1 cut(s)	61
AfaI	GTAC	4 cut(s)	144, 306, 469, 1027
AfiI	CCNNNNNNNGG	5 cut(s)	176, 236, 458, 464, 687
AflIII	ACRYGT	2 cut(s)	172, 307
AgeI	ACCGGT	1 cut(s)	560
AgsI	TTSAA	3 cut(s)	639, 755, 830
AjiI	CACGTC	1 cut(s)	781
AjuI	GAANNNNNNNTTGG	2 cut(s)	619, 651
AleI	CACNNNNGTG	1 cut(s)	365
AluBI	AGCT	4 cut(s)	53, 482, 729, 1066
AluI	AGCT	4 cut(s)	53, 482, 729, 1066
Alw21I	GWGCWC	2 cut(s)	214, 862
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	4 cut(s)	730, 844, 956, 969
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	37, 251, 1036
ApeKI	GCWGC	2 cut(s)	275, 622
ApoI	RAATTY	2 cut(s)	385, 646
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AsiGI	ACCGGT	1 cut(s)	560
Asp700I	GAANNNNTTC	1 cut(s)	925
Asp718I	GGTACC	1 cut(s)	467
AspA2I	CCTAGG	1 cut(s)	248
AspS9I	GGNCC	3 cut(s)	179, 287, 1036
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	3 cut(s)	158, 575, 655
AvaII	GGWCC	2 cut(s)	179, 287
AvrII	CCTAGG	1 cut(s)	248
AxyI	CCTNAGG	1 cut(s)	1032
BamHI	GGATCC	1 cut(s)	961
BanI	GGYRCC	1 cut(s)	467
BarI	GAAGNNNNNNTAC	2 cut(s)	91, 123
BbsI	GAAGAC	3 cut(s)	387, 420, 966
Bbv12I	GWGCWC	2 cut(s)	214, 862
BbvI	GCAGC	2 cut(s)	262, 634
BccI	CCATC	7 cut(s)	97, 199, 232, 467, 680, 1000, 1079
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	378
BisI	GCNGC	2 cut(s)	276, 623
BlnI	CCTAGG	1 cut(s)	248
BlsI	GCNGC	2 cut(s)	277, 624
Bme18I	GGWCC	2 cut(s)	179, 287
BmgBI	CACGTC	1 cut(s)	781
BmgT120I	GGNCC	3 cut(s)	179, 287, 1036
BmiI	GGNNCC	4 cut(s)	289, 469, 603, 963
BmsI	GCATC	2 cut(s)	426, 493
BpiI	GAAGAC	3 cut(s)	387, 420, 966
BpmI	CTGGAG	2 cut(s)	615, 846
BpuMI	CCSGG	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	98
BsaJI	CCNNGG	5 cut(s)	26, 43, 215, 248, 717
BsaWI	WCCGGW	1 cut(s)	560
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	5 cut(s)	176, 236, 458, 464, 687
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	4 cut(s)	632, 658, 681, 845
Bse21I	CCTNAGG	1 cut(s)	1032
BseDI	CCNNGG	5 cut(s)	26, 43, 215, 248, 717
BseGI	GGATG	4 cut(s)	224, 441, 454, 508
BseLI	CCNNNNNNNGG	5 cut(s)	176, 236, 458, 464, 687
BseMII	CTCAG	3 cut(s)	72, 359, 921
BseNI	ACTGG	4 cut(s)	632, 658, 681, 845
BseRI	GAGGAG	2 cut(s)	614, 1029
BseXI	GCAGC	2 cut(s)	262, 634
BsgI	GTGCAG	5 cut(s)	69, 78, 825, 915, 935
BshFI	GGCC	3 cut(s)	39, 253, 1038
BshNI	GGYRCC	1 cut(s)	467
BshTI	ACCGGT	1 cut(s)	560
BsiHKAI	GWGCWC	2 cut(s)	214, 862
BsiSI	CCGG	2 cut(s)	9, 561
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	5 cut(s)	176, 236, 458, 464, 687
BsmAI	GTCTC	1 cut(s)	521
BsmFI	GGGAC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	3 cut(s)	39, 253, 1038
Bsp1286I	GDGCHC	2 cut(s)	214, 862
Bsp1407I	TGTACA	1 cut(s)	304
Bsp143I	GATC	4 cut(s)	735, 836, 937, 961
BspANI	GGCC	3 cut(s)	39, 253, 1038
BspCNI	CTCAG	3 cut(s)	71, 358, 920
BspLI	GGNNCC	4 cut(s)	289, 469, 603, 963
BspPI	GGATC	4 cut(s)	730, 844, 956, 969
BspT107I	GGYRCC	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	560
BsrGI	TGTACA	1 cut(s)	304
BsrI	ACTGG	4 cut(s)	632, 658, 681, 845
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	5 cut(s)	26, 43, 215, 248, 717
BssMI	GATC	4 cut(s)	735, 836, 937, 961
BssNAI	GTATAC	1 cut(s)	541
BssT1I	CCWWGG	2 cut(s)	248, 717
Bst1107I	GTATAC	1 cut(s)	541
Bst4CI	ACNGT	4 cut(s)	258, 379, 498, 643
Bst6I	CTCTTC	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstAUI	TGTACA	1 cut(s)	304
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	138, 731, 1040
BstDEI	CTNAG	5 cut(s)	58, 122, 345, 907, 1032
BstF5I	GGATG	4 cut(s)	224, 441, 454, 508
BstKTI	GATC	4 cut(s)	738, 839, 940, 964
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	4 cut(s)	735, 836, 937, 961
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 158, 209, 512
BstNSI	RCATGY	3 cut(s)	136, 176, 311
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	262, 634
BstV2I	GAAGAC	3 cut(s)	387, 420, 966
BstX2I	RGATCY	3 cut(s)	735, 836, 961
BstYI	RGATCY	3 cut(s)	735, 836, 961
BstZ17I	GTATAC	1 cut(s)	541
Bsu36I	CCTNAGG	1 cut(s)	1032
BsuRI	GGCC	3 cut(s)	39, 253, 1038
BtrI	CACGTC	1 cut(s)	781
BtsCI	GGATG	4 cut(s)	224, 441, 454, 508
BtsIMutI	CAGTG	3 cut(s)	66, 688, 810
Cac8I	GCNNGC	3 cut(s)	138, 731, 1040
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	3 cut(s)	179, 287, 1036
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	4 cut(s)	143, 305, 468, 1026
CspAI	ACCGGT	1 cut(s)	560
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	4 cut(s)	133, 173, 308, 892
CviQI	GTAC	4 cut(s)	143, 305, 468, 1026
DdeI	CTNAG	5 cut(s)	58, 122, 345, 907, 1032
DpnI	GATC	4 cut(s)	737, 838, 939, 963
DpnII	GATC	4 cut(s)	735, 836, 937, 961
DraI	TTTAAA	1 cut(s)	901
DraIII	CACNNNGTG	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
Eco130I	CCWWGG	2 cut(s)	248, 717
Eco47I	GGWCC	2 cut(s)	179, 287
Eco57I	CTGAAG	2 cut(s)	96, 414
Eco81I	CCTNAGG	1 cut(s)	1032
EcoO109I	RGGNCCY	1 cut(s)	179
EcoT14I	CCWWGG	2 cut(s)	248, 717
ErhI	CCWWGG	2 cut(s)	248, 717
FaeI	CATG	4 cut(s)	136, 176, 311, 895
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	4 cut(s)	132, 172, 307, 891
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	2 cut(s)	276, 623
FokI	GGATG	4 cut(s)	211, 441, 448, 515
Fsp4HI	GCNGC	2 cut(s)	276, 623
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	2 cut(s)	276, 623
GsuI	CTGGAG	2 cut(s)	615, 846
HaeIII	GGCC	3 cut(s)	39, 253, 1038
HapII	CCGG	2 cut(s)	9, 561
HgaI	GACGC	1 cut(s)	141
Hin1II	CATG	4 cut(s)	136, 176, 311, 895
HinfI	GANTC	7 cut(s)	4, 104, 341, 566, 998, 1100, 1112
HpaII	CCGG	2 cut(s)	9, 561
HphI	GGTGA	3 cut(s)	158, 575, 655
Hpy166II	GTNNAC	3 cut(s)	166, 541, 1028
Hpy188I	TCNGA	5 cut(s)	81, 942, 997, 1099, 1111
Hpy188III	TCNNGA	1 cut(s)	884
Hpy8I	GTNNAC	3 cut(s)	166, 541, 1028
HpyCH4III	ACNGT	4 cut(s)	258, 379, 498, 643
HpyCH4IV	ACGT	3 cut(s)	97, 780, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 158, 209, 512
HpyF3I	CTNAG	5 cut(s)	58, 122, 345, 907, 1032
HpySE526I	ACGT	3 cut(s)	97, 780, 971
Hsp92II	CATG	4 cut(s)	136, 176, 311, 895
KpnI	GGTACC	1 cut(s)	471
Kzo9I	GATC	4 cut(s)	735, 836, 937, 961
LmnI	GCTCC	3 cut(s)	217, 601, 865
Lsp1109I	GCAGC	2 cut(s)	262, 634
LweI	GCATC	2 cut(s)	426, 493
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	3 cut(s)	97, 780, 971
MaeIII	GTNAC	4 cut(s)	358, 673, 776, 967
MalI	GATC	4 cut(s)	737, 838, 939, 963
MboI	GATC	4 cut(s)	735, 836, 937, 961
MboII	GAAGA	8 cut(s)	99, 102, 315, 387, 420, 918, 966, 1070
MflI	RGATCY	3 cut(s)	735, 836, 961
MhlI	GDGCHC	2 cut(s)	214, 862
MluCI	AATT	6 cut(s)	385, 446, 646, 755, 817, 981
MmeI	TCCRAC	2 cut(s)	104, 480
MroXI	GAANNNNTTC	1 cut(s)	925
MseI	TTAA	5 cut(s)	75, 821, 870, 900, 945
MslI	CAYNNNNRTG	2 cut(s)	171, 365
MspI	CCGG	2 cut(s)	9, 561
Mva1269I	GAATGC	1 cut(s)	18
MwoI	GCNNNNNNNGC	4 cut(s)	92, 158, 209, 512
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	4 cut(s)	735, 836, 937, 961
NlaIII	CATG	4 cut(s)	136, 176, 311, 895
NlaIV	GGNNCC	4 cut(s)	289, 469, 603, 963
NmuCI	GTSAC	3 cut(s)	358, 673, 776
NspI	RCATGY	3 cut(s)	136, 176, 311
OliI	CACNNNNGTG	1 cut(s)	365
PciI	ACATGT	2 cut(s)	172, 307
PctI	GAATGC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	925
PfeI	GAWTC	6 cut(s)	104, 341, 566, 998, 1100, 1112
PfoI	TCCNGGA	2 cut(s)	7, 586
PinAI	ACCGGT	1 cut(s)	560
PkrI	GCNGC	2 cut(s)	277, 624
Ppu21I	YACGTR	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	179
PscI	ACATGT	2 cut(s)	172, 307
PsiI	TTATAA	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	179
PspN4I	GGNNCC	4 cut(s)	289, 469, 603, 963
PspPI	GGNCC	3 cut(s)	179, 287, 1036
PspPPI	RGGWCCY	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	3 cut(s)	735, 836, 961
RsaI	GTAC	4 cut(s)	144, 306, 469, 1027
RsaNI	GTAC	4 cut(s)	143, 305, 468, 1026
RseI	CAYNNNNRTG	2 cut(s)	171, 365
SaqAI	TTAA	5 cut(s)	75, 821, 870, 900, 945
SatI	GCNGC	2 cut(s)	276, 623
Sau3AI	GATC	4 cut(s)	735, 836, 937, 961
Sau96I	GGNCC	3 cut(s)	179, 287, 1036
SduI	GDGCHC	2 cut(s)	214, 862
SfaNI	GCATC	2 cut(s)	426, 493
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	2 cut(s)	179, 287
SmiMI	CAYNNNNRTG	2 cut(s)	171, 365
Sse9I	AATT	6 cut(s)	385, 446, 646, 755, 817, 981
SspMI	CTAG	1 cut(s)	249
StyI	CCWWGG	2 cut(s)	248, 717
TaaI	ACNGT	4 cut(s)	258, 379, 498, 643
TaiI	ACGT	3 cut(s)	100, 783, 974
TaqI	TCGA	1 cut(s)	1056
TasI	AATT	6 cut(s)	385, 446, 646, 755, 817, 981
TatI	WGTACW	2 cut(s)	304, 1025
TfiI	GAWTC	6 cut(s)	104, 341, 566, 998, 1100, 1112
Tru1I	TTAA	5 cut(s)	75, 821, 870, 900, 945
Tru9I	TTAA	5 cut(s)	75, 821, 870, 900, 945
TscAI	CASTG	3 cut(s)	66, 688, 810
TseFI	GTSAC	3 cut(s)	358, 673, 776
TseI	GCWGC	2 cut(s)	275, 622
Tsp45I	GTSAC	3 cut(s)	358, 673, 776
TspDTI	ATGAA	2 cut(s)	507, 759
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	3 cut(s)	66, 688, 810
VpaK11BI	GGWCC	2 cut(s)	179, 287
XapI	RAATTY	2 cut(s)	385, 646
XceI	RCATGY	3 cut(s)	136, 176, 311
XmaJI	CCTAGG	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	540
XmnI	GAANNNNTTC	1 cut(s)	925
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.