Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025430.1

Orthogroup ID

OG0002956

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 303

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025430.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 190 bp

agctttacttgtggaaacaattaaagatcctcaggcatcttggacagaatctaagcccaagttggagaaggacccgcaaaggcgtgcagccaaccctgatctaaattcatctgacatggaaaagctcttccgcgaccacataaagatgctgcatgaggtaaatatgacaatgatgtacctgcgacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0001085 GO:0001103 GO:0003674 GO:0003712 GO:0003713 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 ko04212 map03040 map04212

Pfam Domains

Protein Families

FF WW

Protein Analysis

62

Amino Acids

7.33

Weight (kDa)

6.98

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19840
fragaria_vesca	FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700
malus_domestica	MD13G1007900.v1.1 MD13G1008000.v1.1 MD16G1000200.v1.1
prunus_persica	Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1
pyrus_communis	pycom13g00650 pycom16g00500 pycom16g00510 pycom16g00520
rosa_chinensis	RchiOBHm_Chr4g0446421
rosa_laevigata	RLG00000005662
rosa_multiflora	Rmu_co8175444.1_g000001 Rmu_sc0008360.1_g000005 Rmu_sc0018208.1_g000001 Rmu_sc0025430.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386860
rosa_rugosa	Rorug04G0371200
rosa_samantha	Rh4AG432800 Rh4BG441900 Rh4CG459300 Rh4DG440700
rosa_wichuraiana	Rw4G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	133
AciI	CCGC	2 cut(s)	75, 131
AclWI	GGATC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	1 cut(s)	177
AluBI	AGCT	2 cut(s)	3, 125
AluI	AGCT	2 cut(s)	3, 125
AlwI	GGATC	1 cut(s)	21
ApeKI	GCWGC	2 cut(s)	87, 149
ApoI	RAATTY	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	71
AxyI	CCTNAGG	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	99, 136
BisI	GCNGC	2 cut(s)	88, 150
BlsI	GCNGC	2 cut(s)	89, 151
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	73
BmsI	GCATC	2 cut(s)	45, 136
Bse21I	CCTNAGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	99, 136
BsgI	GTGCAG	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	26, 98
BspACI	CCGC	2 cut(s)	75, 131
BspCNI	CTCAG	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	132
BssMI	GATC	2 cut(s)	26, 98
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	2 cut(s)	31, 52
BstFNI	CGCG	1 cut(s)	133
BstKTI	GATC	2 cut(s)	29, 101
BstMBI	GATC	2 cut(s)	26, 98
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	99, 136
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
Bsu36I	CCTNAGG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	2 cut(s)	116, 153
CviJI	RGCY	4 cut(s)	3, 56, 90, 125
CviKI_1	RGCY	4 cut(s)	3, 56, 90, 125
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	2 cut(s)	31, 52
DpnI	GATC	2 cut(s)	28, 100
DpnII	GATC	2 cut(s)	26, 98
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	71
Eco81I	CCTNAGG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	71
FaeI	CATG	2 cut(s)	119, 156
FaiI	YATR	4 cut(s)	117, 141, 154, 165
FatI	CATG	2 cut(s)	115, 152
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	88, 150
Fsp4HI	GCNGC	2 cut(s)	88, 150
GluI	GCNGC	2 cut(s)	88, 150
Hin1II	CATG	2 cut(s)	119, 156
HinfI	GANTC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	87, 152
HpyF3I	CTNAG	2 cut(s)	31, 52
Hsp92II	CATG	2 cut(s)	119, 156
Kzo9I	GATC	2 cut(s)	26, 98
LguI	GCTCTTC	1 cut(s)	132
LpnPI	CCDG	2 cut(s)	18, 109
Lsp1109I	GCAGC	2 cut(s)	99, 136
LweI	GCATC	2 cut(s)	45, 136
MalI	GATC	2 cut(s)	28, 100
MboI	GATC	2 cut(s)	26, 98
MboII	GAAGA	1 cut(s)	119
MflI	RGATCY	1 cut(s)	26
MluCI	AATT	2 cut(s)	19, 104
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	2 cut(s)	40, 149
MseI	TTAA	1 cut(s)	22
MslI	CAYNNNNRTG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	133
NdeII	GATC	2 cut(s)	26, 98
NlaIII	CATG	2 cut(s)	119, 156
NlaIV	GGNNCC	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	89, 151
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	71
PspPPI	RGGWCCY	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	22
SatI	GCNGC	2 cut(s)	88, 150
Sau3AI	GATC	2 cut(s)	26, 98
Sau96I	GGNCC	1 cut(s)	71
SetI	ASST	3 cut(s)	127, 160, 181
SfaNI	GCATC	2 cut(s)	45, 136
SinI	GGWCC	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	144
Sse9I	AATT	2 cut(s)	19, 104
SsiI	CCGC	2 cut(s)	75, 131
TasI	AATT	2 cut(s)	19, 104
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	22
Tru9I	TTAA	1 cut(s)	22
TseI	GCWGC	2 cut(s)	87, 149
TspDTI	ATGAA	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.