Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8175444.1

Orthogroup ID

OG0002956

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 622

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8175444.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgagaaagaagcaggatggtgacacgccaaaagaacatccagagtcagtgccaaataatagtcaaatggttgaaaaggaatctgctccaatcagtttgagtgctccggccattagcacaggtggtcgtgaagccatggcttacaaggcctcaactgtgcagggatcatcatctgcactcgacctgattaaaaagaagttgcaggattctggagctcctgttacttcatcaccagtttcaggaccttcagagttaaatggctcaagaggagttgagagtacacctaaggtccagcagagtgagaatagcaaggataagctaaatgacactaatggggatggtaacatgtctgactcctcatcagattcagaggacgcagatagtgggccaacaaaagaggagggtattattcaattcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0001085 GO:0001103 GO:0003674 GO:0003712 GO:0003713 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 ko04212 map03040 map04212

Pfam Domains

Protein Families

FF WW

Protein Analysis

140

Amino Acids

14.63

Weight (kDa)

4.8

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19840
fragaria_vesca	FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700
malus_domestica	MD13G1007900.v1.1 MD13G1008000.v1.1 MD16G1000200.v1.1
prunus_persica	Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1
pyrus_communis	pycom13g00650 pycom16g00500 pycom16g00510 pycom16g00520
rosa_chinensis	RchiOBHm_Chr4g0446421
rosa_laevigata	RLG00000005662
rosa_multiflora	Rmu_co8175444.1_g000001 Rmu_sc0008360.1_g000005 Rmu_sc0018208.1_g000001 Rmu_sc0025430.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386860
rosa_rugosa	Rorug04G0371200
rosa_samantha	Rh4AG432800 Rh4BG441900 Rh4CG459300 Rh4DG440700
rosa_wichuraiana	Rw4G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	74, 413, 418
AluBI	AGCT	2 cut(s)	215, 319
AluI	AGCT	2 cut(s)	215, 319
Alw21I	GWGCWC	2 cut(s)	106, 217
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	3 cut(s)	108, 147, 386
AspS9I	GGNCC	3 cut(s)	242, 289, 386
AsuHPI	GGTGA	2 cut(s)	32, 222
AvaII	GGWCC	2 cut(s)	242, 289
AxyI	CCTNAGG	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	217
Bbv12I	GWGCWC	2 cut(s)	106, 217
BccI	CCATC	2 cut(s)	11, 332
Bme18I	GGWCC	2 cut(s)	242, 289
BmgT120I	GGNCC	3 cut(s)	242, 289, 386
BpmI	CTGGAG	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	233
Bse21I	CCTNAGG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	3 cut(s)	22, 37, 343
BseJI	GATNNNNATC	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	3 cut(s)	282, 346, 413
BsgI	GTGCAG	2 cut(s)	159, 179
BshFI	GGCC	3 cut(s)	110, 149, 388
BsiHKAI	GWGCWC	2 cut(s)	106, 217
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	239
BsnI	GGCC	3 cut(s)	110, 149, 388
Bsp1286I	GDGCHC	2 cut(s)	106, 217
Bsp143I	GATC	1 cut(s)	164
Bsp19I	CCATGG	1 cut(s)	135
BspANI	GGCC	3 cut(s)	110, 149, 388
BspPI	GGATC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	3 cut(s)	22, 37, 343
BstKTI	GATC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	349
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	110, 149, 388
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	22, 37, 343
BtsIMutI	CAGTG	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	242, 289, 386
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	2 cut(s)	136, 346
CviJI	RGCY	8 cut(s)	110, 134, 140, 149, 215, 261, 319, 388
CviKI_1	RGCY	8 cut(s)	110, 134, 140, 149, 215, 261, 319, 388
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	217
Eco47I	GGWCC	2 cut(s)	242, 289
Eco53kI	GAGCTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	231
Eco81I	CCTNAGG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	139, 349
FaiI	YATR	2 cut(s)	137, 347
FatI	CATG	2 cut(s)	135, 345
FokI	GGATG	3 cut(s)	24, 29, 350
FriOI	GRGCYC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	3 cut(s)	110, 149, 388
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	383
Hin1II	CATG	2 cut(s)	139, 349
HinfI	GANTC	5 cut(s)	44, 80, 206, 353, 365
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	2 cut(s)	32, 222
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	4 cut(s)	250, 352, 364, 370
Hpy188III	TCNNGA	5 cut(s)	41, 128, 210, 240, 264
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	3 cut(s)	160, 176, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	139, 349
Kzo9I	GATC	1 cut(s)	164
LmnI	GCTCC	4 cut(s)	91, 109, 212, 220
MaeIII	GTNAC	3 cut(s)	20, 220, 341
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MhlI	GDGCHC	2 cut(s)	106, 217
MluCI	AATT	1 cut(s)	413
MlyI	GAGTC	2 cut(s)	53, 347
MnlI	CCTC	6 cut(s)	160, 260, 364, 367, 391, 394
MseI	TTAA	2 cut(s)	189, 254
MspI	CCGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	2 cut(s)	139, 349
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	149
PciI	ACATGT	1 cut(s)	345
PfeI	GAWTC	3 cut(s)	80, 206, 365
PleI	GAGTC	2 cut(s)	52, 347
PpsI	GAGTC	2 cut(s)	52, 347
PpuMI	RGGWCCY	1 cut(s)	242
PscI	ACATGT	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	242
PspPI	GGNCC	3 cut(s)	242, 289, 386
PspPPI	RGGWCCY	1 cut(s)	242
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SacI	GAGCTC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	189, 254
Sau3AI	GATC	1 cut(s)	164
Sau96I	GGNCC	3 cut(s)	242, 289, 386
SchI	GAGTC	2 cut(s)	53, 347
SduI	GDGCHC	2 cut(s)	106, 217
SetI	ASST	7 cut(s)	124, 186, 217, 247, 286, 291, 321
SinI	GGWCC	2 cut(s)	242, 289
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
Sse9I	AATT	1 cut(s)	413
SseBI	AGGCCT	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	217
StuI	AGGCCT	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	413
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	3 cut(s)	80, 206, 365
Tru1I	TTAA	2 cut(s)	189, 254
Tru9I	TTAA	2 cut(s)	189, 254
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	216
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	2 cut(s)	242, 289
XceI	RCATGY	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.