Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002956

Physical Location & Seq

Genomic Coordinates Forward (+)

495381 .. 497497

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1008000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGTCATACATGATTTCTATTCTGCTTGTAGGGTCCTTCCATTGAAGAGGGCTGCTGAAGAAAAGGCTCAAGCAGAGTGTGCTGCTGCAGCAGCTGGTTTTAAGTCCATGCTTAAAGAGAAAGGAGATATTACTGTTAGTTCTCGTTGGTCCAGGGTGAAAGATAGTCTGCGGAATGACCCAAGGTACAAAAATGTTAGGCATGAGGATAGGGAAGTTTTATTCAATCAGTATATATCAGGACTAAAAGCTGTGGAAGAGGAAGCAGAACGAGAGGCAAAAGCTAAACGTGACGAGCAGGAAAAACTGAGGGAAAGGGAACGAGAACTGCGGAAGCGGAAGGAAAGAGAAGAGCAAGAAACAGAGAGGGTGCGACTGAAAGTTCGCAGGAAGGAGGCAGTTGCTACTTTTCAAGCTTTACTTGTGGAAACAATTAAAGATCCTCAGGCATCTTGGACAGGCTCTAAGCCTAAATTGGAGAAGGATCCGCAAAGGCGTGCAGCCAACCCTGATTTAGATCCATCTGACATGGATAAGCTCTTCCGGGAACATGTAAAGATGCTAAACGAGCGATGTGCACATGAGTTCAGAACTCTGTTGGCCGAAGTCTTGACTGCAGAAGCAGCGTCCCAAGAGACAGAAGATGGAAAAACAGTTCTTAATTCGTGGTCAACAGCTAAACGTATTCTAAGGACGGATCCCAGATACGACAAGACGCCAAGAAAAGAGAGGGAAGTTTTGTGGAGACGATATTCTGAGGAGATGCTGCGGAAGCAAAAGTCAGCAGTTGGTCGTAAGGAAGATAGGAAAACAGATGCTAAAAGTAGAAGTTCTATCGATGCTGGGAGGAATCCCTATGGATCTAGGGGTACTCACGATCGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0001085 GO:0001103 GO:0003674 GO:0003712 GO:0003713 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 ko04212 map03040 map04212

Pfam Domains

Protein Families

FF WW

Protein Analysis

296

Amino Acids

34.53

Weight (kDa)

9.66

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FF	PF01846	32 - 78	1.5e-13	FF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19840
fragaria_vesca	FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700
malus_domestica	MD13G1007900.v1.1 MD13G1008000.v1.1 MD16G1000200.v1.1
prunus_persica	Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1
pyrus_communis	pycom13g00650 pycom16g00500 pycom16g00510 pycom16g00520
rosa_chinensis	RchiOBHm_Chr4g0446421
rosa_laevigata	RLG00000005662
rosa_multiflora	Rmu_co8175444.1_g000001 Rmu_sc0008360.1_g000005 Rmu_sc0018208.1_g000001 Rmu_sc0025430.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386860
rosa_rugosa	Rorug04G0371200
rosa_samantha	Rh4AG432800 Rh4BG441900 Rh4CG459300 Rh4DG440700
rosa_wichuraiana	Rw4G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	172, 331, 337, 488, 769
AclWI	GGATC	7 cut(s)	434, 479, 492, 512, 692, 705, 868
AcoI	YGGCCR	1 cut(s)	600
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	716
AfaI	GTAC	2 cut(s)	188, 871
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	3 cut(s)	46, 226, 413
AjnI	CCWGG	1 cut(s)	152
AloI	GAACNNNNNNTCC	2 cut(s)	639, 671
AluBI	AGCT	6 cut(s)	95, 251, 284, 416, 538, 677
AluI	AGCT	6 cut(s)	95, 251, 284, 416, 538, 677
Alw21I	GWGCWC	1 cut(s)	580
Alw26I	GTCTC	2 cut(s)	629, 739
Alw44I	GTGCAC	1 cut(s)	576
AlwI	GGATC	7 cut(s)	434, 479, 492, 512, 692, 705, 868
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	600
ApaLI	GTGCAC	1 cut(s)	576
ApeKI	GCWGC	8 cut(s)	53, 83, 86, 89, 92, 500, 623, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	366, 398
AspS9I	GGNCC	2 cut(s)	34, 150
AsuC2I	CCSGG	1 cut(s)	545
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	2 cut(s)	34, 150
AxyI	CCTNAGG	1 cut(s)	444
BaeGI	GKGCMC	1 cut(s)	580
BamHI	GGATCC	2 cut(s)	484, 697
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	8 cut(s)	40, 70, 73, 101, 104, 512, 635, 753
BccI	CCATC	2 cut(s)	529, 638
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	545
BcoDI	GTCTC	2 cut(s)	629, 739
BfaI	CTAG	1 cut(s)	864
BfmI	CTRYAG	2 cut(s)	87, 615
BisI	GCNGC	8 cut(s)	54, 84, 87, 90, 93, 501, 624, 767
BlsI	GCNGC	8 cut(s)	55, 85, 88, 91, 94, 502, 625, 768
Bme1390I	CCNGG	2 cut(s)	154, 545
Bme18I	GGWCC	2 cut(s)	34, 150
BmgT120I	GGNCC	2 cut(s)	34, 150
BmiI	GGNNCC	3 cut(s)	35, 486, 699
BmrFI	CCNGG	2 cut(s)	154, 545
BmsI	GCATC	5 cut(s)	458, 549, 753, 805, 829
BpuEI	CTTGAG	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	545
Bsa29I	ATCGAT	1 cut(s)	837
BsaBI	GATNNNNATC	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	716
BsaJI	CCNNGG	2 cut(s)	153, 182
Bse21I	CCTNAGG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	154
BseCI	ATCGAT	1 cut(s)	837
BseDI	CCNNGG	2 cut(s)	153, 182
BseJI	GATNNNNATC	1 cut(s)	516
BseMII	CTCAG	3 cut(s)	299, 458, 747
BseRI	GAGGAG	1 cut(s)	773
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	8 cut(s)	40, 70, 73, 101, 104, 512, 635, 753
BseYI	CCCAGC	1 cut(s)	842
BsgI	GTGCAG	1 cut(s)	519
Bsh1285I	CGRYCG	1 cut(s)	880
BshFI	GGCC	1 cut(s)	602
BshVI	ATCGAT	1 cut(s)	837
BsiEI	CGRYCG	1 cut(s)	880
BsiHKAI	GWGCWC	1 cut(s)	580
BsiSI	CCGG	1 cut(s)	544
BslFI	GGGAC	1 cut(s)	613
BsmAI	GTCTC	2 cut(s)	629, 739
BsmBI	CGTCTC	1 cut(s)	739
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp143I	GATC	6 cut(s)	439, 484, 517, 697, 860, 877
BspACI	CCGC	5 cut(s)	172, 331, 337, 488, 769
BspANI	GGCC	1 cut(s)	602
BspCNI	CTCAG	3 cut(s)	300, 457, 748
BspDI	ATCGAT	1 cut(s)	837
BspLI	GGNNCC	3 cut(s)	35, 486, 699
BspMAI	CTGCAG	2 cut(s)	91, 619
BspPI	GGATC	7 cut(s)	434, 479, 492, 512, 692, 705, 868
BspQI	GCTCTTC	2 cut(s)	345, 545
BssECI	CCNNGG	2 cut(s)	153, 182
BssMI	GATC	6 cut(s)	439, 484, 517, 697, 860, 877
BssNI	GRCGYC	1 cut(s)	716
BssT1I	CCWWGG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	136, 655
Bst6I	CTCTTC	4 cut(s)	41, 252, 345, 545
BstACI	GRCGYC	1 cut(s)	716
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	5 cut(s)	308, 444, 465, 689, 756
BstKTI	GATC	6 cut(s)	442, 487, 520, 700, 863, 880
BstMAI	GTCTC	2 cut(s)	629, 739
BstMBI	GATC	6 cut(s)	439, 484, 517, 697, 860, 877
BstMCI	CGRYCG	1 cut(s)	880
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 89, 92, 568, 623, 772
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	2 cut(s)	152, 543
BstSFI	CTRYAG	2 cut(s)	87, 615
BstSLI	GKGCMC	1 cut(s)	580
BstV1I	GCAGC	8 cut(s)	40, 70, 73, 101, 104, 512, 635, 753
BstX2I	RGATCY	5 cut(s)	439, 484, 517, 697, 860
BstYI	RGATCY	5 cut(s)	439, 484, 517, 697, 860
Bsu15I	ATCGAT	1 cut(s)	837
Bsu36I	CCTNAGG	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	602
BsuTUI	ATCGAT	1 cut(s)	837
BtgZI	GCGATG	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	498
CaiI	CAGNNNCTG	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	34, 150
ClaI	ATCGAT	1 cut(s)	837
CseI	GACGC	2 cut(s)	615, 724
Csp6I	GTAC	2 cut(s)	187, 870
CviAII	CATG	6 cut(s)	11, 109, 203, 529, 551, 581
CviQI	GTAC	2 cut(s)	187, 870
DdeI	CTNAG	5 cut(s)	308, 444, 465, 689, 756
DpnI	GATC	6 cut(s)	441, 486, 519, 699, 862, 879
DpnII	GATC	6 cut(s)	439, 484, 517, 697, 860, 877
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	4 cut(s)	41, 252, 345, 545
EarI	CTCTTC	4 cut(s)	41, 252, 345, 545
Eco130I	CCWWGG	1 cut(s)	182
Eco47I	GGWCC	2 cut(s)	34, 150
Eco57I	CTGAAG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	182
Esp3I	CGTCTC	1 cut(s)	739
FaeI	CATG	6 cut(s)	14, 112, 206, 532, 554, 584
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	6 cut(s)	10, 108, 202, 528, 550, 580
Fnu4HI	GCNGC	8 cut(s)	54, 84, 87, 90, 93, 501, 624, 767
Fsp4HI	GCNGC	8 cut(s)	54, 84, 87, 90, 93, 501, 624, 767
FspBI	CTAG	1 cut(s)	864
GluI	GCNGC	8 cut(s)	54, 84, 87, 90, 93, 501, 624, 767
GsaI	CCCAGC	1 cut(s)	846
HaeIII	GGCC	1 cut(s)	602
HapII	CCGG	1 cut(s)	544
HgaI	GACGC	2 cut(s)	615, 724
Hin1I	GRCGYC	1 cut(s)	716
Hin1II	CATG	6 cut(s)	14, 112, 206, 532, 554, 584
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	1 cut(s)	850
HpaII	CCGG	1 cut(s)	544
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	578, 672
Hpy188I	TCNGA	3 cut(s)	526, 590, 757
Hpy188III	TCNNGA	3 cut(s)	240, 610, 875
Hpy8I	GTNNAC	2 cut(s)	578, 672
HpyAV	CCTTC	4 cut(s)	47, 334, 385, 475
HpyCH4III	ACNGT	2 cut(s)	136, 655
HpyCH4IV	ACGT	2 cut(s)	289, 682
HpyCH4V	TGCA	4 cut(s)	89, 500, 578, 617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 89, 92, 568, 623, 772
HpyF3I	CTNAG	5 cut(s)	308, 444, 465, 689, 756
HpySE526I	ACGT	2 cut(s)	289, 682
Hsp92I	GRCGYC	1 cut(s)	716
Hsp92II	CATG	6 cut(s)	14, 112, 206, 532, 554, 584
Kzo9I	GATC	6 cut(s)	439, 484, 517, 697, 860, 877
LguI	GCTCTTC	2 cut(s)	345, 545
Lsp1109I	GCAGC	8 cut(s)	40, 70, 73, 101, 104, 512, 635, 753
LweI	GCATC	5 cut(s)	458, 549, 753, 805, 829
MaeI	CTAG	1 cut(s)	864
MaeII	ACGT	2 cut(s)	289, 682
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	6 cut(s)	441, 486, 519, 699, 862, 879
MboI	GATC	6 cut(s)	439, 484, 517, 697, 860, 877
MboII	GAAGA	7 cut(s)	58, 71, 269, 362, 532, 653, 812
MflI	RGATCY	5 cut(s)	439, 484, 517, 697, 860
MhlI	GDGCHC	1 cut(s)	580
MluCI	AATT	3 cut(s)	432, 473, 661
MseI	TTAA	4 cut(s)	102, 114, 435, 660
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	2 cut(s)	154, 545
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	6 cut(s)	80, 89, 92, 568, 623, 772
NciI	CCSGG	1 cut(s)	545
NdeII	GATC	6 cut(s)	439, 484, 517, 697, 860, 877
NlaIII	CATG	6 cut(s)	14, 112, 206, 532, 554, 584
NlaIV	GGNNCC	3 cut(s)	35, 486, 699
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	554
PciI	ACATGT	1 cut(s)	550
PciSI	GCTCTTC	2 cut(s)	345, 545
PfeI	GAWTC	1 cut(s)	850
PfoI	TCCNGGA	1 cut(s)	543
PkrI	GCNGC	8 cut(s)	55, 85, 88, 91, 94, 502, 625, 768
Ple19I	CGATCG	1 cut(s)	880
PpuMI	RGGWCCY	1 cut(s)	34
PscI	ACATGT	1 cut(s)	550
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	35, 486, 699
PspPI	GGNCC	2 cut(s)	34, 150
PspPPI	RGGWCCY	1 cut(s)	34
PstI	CTGCAG	2 cut(s)	91, 619
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	5 cut(s)	439, 484, 517, 697, 860
PvuI	CGATCG	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	188, 871
RsaNI	GTAC	2 cut(s)	187, 870
SapI	GCTCTTC	2 cut(s)	345, 545
SaqAI	TTAA	4 cut(s)	102, 114, 435, 660
SatI	GCNGC	8 cut(s)	54, 84, 87, 90, 93, 501, 624, 767
Sau3AI	GATC	6 cut(s)	439, 484, 517, 697, 860, 877
Sau96I	GGNCC	2 cut(s)	34, 150
ScrFI	CCNGG	2 cut(s)	154, 545
SduI	GDGCHC	1 cut(s)	580
SetI	ASST	9 cut(s)	97, 188, 253, 286, 292, 418, 540, 679, 685
SfaNI	GCATC	5 cut(s)	458, 549, 753, 805, 829
SfcI	CTRYAG	2 cut(s)	87, 615
SinI	GGWCC	2 cut(s)	34, 150
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	3 cut(s)	432, 473, 661
SsiI	CCGC	5 cut(s)	172, 331, 337, 488, 769
SspMI	CTAG	1 cut(s)	864
StyD4I	CCNGG	2 cut(s)	152, 543
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	136, 655
TaiI	ACGT	2 cut(s)	292, 685
TaqI	TCGA	1 cut(s)	837
TasI	AATT	3 cut(s)	432, 473, 661
TfiI	GAWTC	1 cut(s)	850
Tru1I	TTAA	4 cut(s)	102, 114, 435, 660
Tru9I	TTAA	4 cut(s)	102, 114, 435, 660
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	8 cut(s)	53, 83, 86, 89, 92, 500, 623, 766
Tsp45I	GTSAC	1 cut(s)	290
TspGWI	ACGGA	1 cut(s)	710
VneI	GTGCAC	1 cut(s)	576
VpaK11BI	GGWCC	2 cut(s)	34, 150
XceI	RCATGY	1 cut(s)	554
XspI	CTAG	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.