Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006265

Physical Location & Seq

Genomic Coordinates Forward (+)

3807357 .. 3807875

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1054200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCTATTGCTCACAAATTCTCTCTCTTTCCTGCATGGCAAGAGGTCCCTGTCTTTCCCGCGCACAACGAGGCCACCGCCGCCGCCCTTCTTATTCCTCAACCCAGACTCCCGCCGTTTTCGACTCCCTCAAAAGTCTTTTTTTTTTCTCCACTCTCATTTATTTCCACTTAAATTATGTCACTTTTATTTTCTTTTTCGTATTATTTTTGTTTTTAAGGCCGTTGGAGGAGTAAGATTCGACGGCCCGGAGATCGAAGTCGGCGAGGTGTCGGAAACGGAGGACGGTGACTTGGTGATCGAGACCGGCGTCACGTGGACGCTGACTCCGGCGTTGACTCTTCCTCAAGGACTTGAAAAGATCAGAGAGGCCGTTGAGGAGTTGAAGCTCAATCCTCCTTCCACTTGTACCGGAATTCATAGGTTTCAAGTAATTAAAAATCTCCGGTTTCATACTGGTTTATCACACAATGTGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0010109 GO:0019222 GO:0031323 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042548 GO:0042550 GO:0043467 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0065007 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01053 ko01100 ko01110 ko01130 map00130 map01053 map01100 map01110 map01130

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Chorismate_bind MR_MLE_C TPP_enzyme_C TPP_enzyme_M_2 TPP_enzyme_N

Protein Analysis

160

Amino Acids

18.26

Weight (kDa)

9.62

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68890 AT1G68890
fragaria_vesca	FvH4_4g28800 FvH4_4g28800 FvH4_4g28800 FvH4_4g28800 FvH4_4g28800
malus_domestica	MD13G1054200.v1.1 MD16G1052600.v1.1
prunus_persica	Prupe.1G298000_v2.0.a1 Prupe.1G298000_v2.0.a1 Prupe.1G298000_v2.0.a1 Prupe.1G298000_v2.0.a1
pyrus_communis	pycom16g04620
rosa_chinensis	RchiOBHm_Chr4g0436931 RchiOBHm_Chr4g0436941
rosa_laevigata	RLG00000006485
rosa_multiflora	Rmu_sc0011344.1_g000001 Rmu_ssc0000302.1_g000001 Rmu_ssc0000328.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378000
rosa_rugosa	Rorug04G0297600
rosa_samantha	Rh4AG351800 Rh4BG360800 Rh4CG375100 Rh4DG355000
rosa_wichuraiana	Rw4G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	61
AciI	CCGC	5 cut(s)	59, 77, 80, 83, 112
AcsI	RAATTY	2 cut(s)	16, 414
AcvI	CACGTG	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	309
AdeI	CACNNNGTG	1 cut(s)	472
AfaI	GTAC	1 cut(s)	409
AgsI	TTSAA	3 cut(s)	356, 385, 428
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	296
AoxI	GGCC	4 cut(s)	71, 219, 244, 369
ApoI	RAATTY	2 cut(s)	16, 414
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	45, 245
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	299, 307
AvaII	GGWCC	1 cut(s)	45
BbrPI	CACGTG	1 cut(s)	315
BceAI	ACGGC	4 cut(s)	99, 206, 259, 356
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	296
BisI	GCNGC	2 cut(s)	80, 83
BlsI	GCNGC	2 cut(s)	81, 84
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	45
BmgT120I	GGNCC	2 cut(s)	45, 245
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	248
BoxI	GACNNNNGTC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	248
BsaAI	YACGTR	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	296
BsaWI	WCCGGW	2 cut(s)	410, 444
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 310, 340
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	460
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	2 cut(s)	243, 392
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	4 cut(s)	73, 221, 246, 371
BsiSI	CCGG	5 cut(s)	248, 306, 329, 411, 445
BslFI	GGGAC	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	4 cut(s)	73, 221, 246, 371
Bso31I	GGTCTC	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	252, 297, 360
BspACI	CCGC	5 cut(s)	59, 77, 80, 83, 112
BspANI	GGCC	4 cut(s)	73, 221, 246, 371
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	305
BssMI	GATC	3 cut(s)	252, 297, 360
BssNI	GRCGYC	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	315
BstFNI	CGCG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	3 cut(s)	255, 300, 363
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	3 cut(s)	252, 297, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstPAI	GACNNNNGTC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	61
BsuRI	GGCC	4 cut(s)	73, 221, 246, 371
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	45, 245
CseI	GACGC	2 cut(s)	298, 328
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	5 cut(s)	73, 221, 246, 371, 388
CviKI_1	RGCY	5 cut(s)	73, 221, 246, 371, 388
CviQI	GTAC	1 cut(s)	408
DpnI	GATC	3 cut(s)	254, 299, 362
DpnII	GATC	3 cut(s)	252, 297, 360
DraIII	CACNNNGTG	1 cut(s)	472
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	45
Eco72I	CACGTG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	414
FaeI	CATG	1 cut(s)	38
FaiI	YATR	4 cut(s)	36, 178, 420, 453
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	1 cut(s)	34
FauI	CCCGC	2 cut(s)	66, 119
Fnu4HI	GCNGC	2 cut(s)	80, 83
Fsp4HI	GCNGC	2 cut(s)	80, 83
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	2 cut(s)	80, 83
HaeIII	GGCC	4 cut(s)	73, 221, 246, 371
HapII	CCGG	5 cut(s)	248, 306, 329, 411, 445
HgaI	GACGC	2 cut(s)	298, 328
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	5 cut(s)	107, 123, 237, 325, 337
HpaII	CCGG	5 cut(s)	248, 306, 329, 411, 445
HphI	GGTGA	2 cut(s)	299, 307
Hpy166II	GTNNAC	2 cut(s)	318, 336
Hpy188I	TCNGA	2 cut(s)	274, 365
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	2 cut(s)	318, 336
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	97, 408
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpySE526I	ACGT	1 cut(s)	314
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	252, 297, 360
LpnPI	CCDG	9 cut(s)	44, 62, 117, 261, 319, 342, 424, 441, 458
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	3 cut(s)	179, 287, 310
MalI	GATC	3 cut(s)	254, 299, 362
MboI	GATC	3 cut(s)	252, 297, 360
MboII	GAAGA	1 cut(s)	332
MluCI	AATT	4 cut(s)	16, 173, 414, 432
MlyI	GAGTC	4 cut(s)	101, 117, 319, 331
MmeI	TCCRAC	2 cut(s)	205, 252
MseI	TTAA	3 cut(s)	171, 216, 435
MspI	CCGG	5 cut(s)	248, 306, 329, 411, 445
MspR9I	CCNGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	79
NciI	CCSGG	1 cut(s)	248
NdeII	GATC	3 cut(s)	252, 297, 360
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	47
NmuCI	GTSAC	3 cut(s)	179, 287, 310
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 306
PfeI	GAWTC	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	81, 84
PleI	GAGTC	4 cut(s)	101, 117, 319, 331
PmaCI	CACGTG	1 cut(s)	315
PmlI	CACGTG	1 cut(s)	315
PpsI	GAGTC	4 cut(s)	101, 117, 319, 331
Ppu21I	YACGTR	1 cut(s)	315
PpuMI	RGGWCCY	1 cut(s)	45
PshAI	GACNNNNGTC	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	45
PspCI	CACGTG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	2 cut(s)	45, 245
PspPPI	RGGWCCY	1 cut(s)	45
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	171, 216, 435
SatI	GCNGC	2 cut(s)	80, 83
Sau3AI	GATC	3 cut(s)	252, 297, 360
Sau96I	GGNCC	2 cut(s)	45, 245
SchI	GAGTC	4 cut(s)	101, 117, 319, 331
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	5 cut(s)	47, 270, 317, 390, 425
SinI	GGWCC	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	4 cut(s)	16, 173, 414, 432
SsiI	CCGC	5 cut(s)	59, 77, 80, 83, 112
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	4 cut(s)	121, 240, 255, 300
TasI	AATT	4 cut(s)	16, 173, 414, 432
TauI	GCSGC	2 cut(s)	82, 85
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	3 cut(s)	171, 216, 435
Tru9I	TTAA	3 cut(s)	171, 216, 435
TseFI	GTSAC	3 cut(s)	179, 287, 310
Tsp45I	GTSAC	3 cut(s)	179, 287, 310
TspDTI	ATGAA	2 cut(s)	407, 440
TspGWI	ACGGA	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	45
XapI	RAATTY	2 cut(s)	16, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.