Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000328.1

Orthogroup ID

OG0006265

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1616

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000328.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgctactactcacaaaccctctctccttcctacactccaacacaaggtctctccctcacaccaaaccctcgccgcctttcccgttcctccacccaaactcccgccatctccgcctccctcctaactccaaggtcgttcgaggcgtgagattcgacggcccggccatcgatatcagccaagtgacgcacaccgacgacggcgatttgataatcgagacttgcctcacgcggaacttgactccggcgttgtctattgagcaagggcttgagagtatcaaggaggcggttgaggagttgaagctccatcctccttcaacttgtagtggaattctcaggtttcaggtggctgtgccgccgagtgcgaaagccttgaactggttttgctgccagccggagtcgtctgcggtctatccactgttttttgtttccaaggaaactgaaaatccgagctataaatcattgtatgtgaatgaaactcgaggagttttcggaatcggtgccgcaatttacttcacaccttcttctaattcttcttcttcttcgatcaaaagaattctatcaaatgaatcagcttttgtaatagcttatggttttatggatattaattacgaccaagagtcgtcttatatgaagcatgagccaggttcatattacttttttattcctcagattgagttacatgagcatgagggcgcttctgtattagcagcaactattggttggagtgagtcttccctttgtacatttgaggaagctgttctttcttatgagttatgtttcaaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0010109 GO:0019222 GO:0031323 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042548 GO:0042550 GO:0043467 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0065007 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 MR_MLE_C TPP_enzyme_C TPP_enzyme_M_2 TPP_enzyme_N

Protein Analysis

262

Amino Acids

29.14

Weight (kDa)

5.45

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68890 AT1G68890
fragaria_vesca	FvH4_4g28800 FvH4_4g28800 FvH4_4g28800 FvH4_4g28800 FvH4_4g28800
malus_domestica	MD13G1054200.v1.1 MD16G1052600.v1.1
prunus_persica	Prupe.1G298000_v2.0.a1 Prupe.1G298000_v2.0.a1 Prupe.1G298000_v2.0.a1 Prupe.1G298000_v2.0.a1
pyrus_communis	pycom16g04620
rosa_chinensis	RchiOBHm_Chr4g0436931 RchiOBHm_Chr4g0436941
rosa_laevigata	RLG00000006485
rosa_multiflora	Rmu_sc0011344.1_g000001 Rmu_ssc0000302.1_g000001 Rmu_ssc0000328.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378000
rosa_rugosa	Rorug04G0297600
rosa_samantha	Rh4AG351800 Rh4BG360800 Rh4CG375100 Rh4DG355000
rosa_wichuraiana	Rw4G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	497
AccII	CGCG	1 cut(s)	229
AciI	CCGC	8 cut(s)	74, 103, 112, 229, 284, 353, 404, 501
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	2 cut(s)	327, 552
AfaI	GTAC	1 cut(s)	742
AfiI	CCNNNNNNNGG	2 cut(s)	45, 375
AgsI	TTSAA	4 cut(s)	298, 315, 373, 781
AhdI	GACNNNNNGTC	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	640
AluBI	AGCT	5 cut(s)	301, 450, 572, 584, 755
AluI	AGCT	5 cut(s)	301, 450, 572, 584, 755
Alw26I	GTCTC	2 cut(s)	54, 209
Ama87I	CYCGRG	1 cut(s)	477
AoxI	GGCC	2 cut(s)	157, 162
ApeKI	GCWGC	2 cut(s)	384, 707
ApoI	RAATTY	2 cut(s)	327, 552
AseI	ATTAAT	1 cut(s)	603
Asp700I	GAANNNNTTC	1 cut(s)	756
AspLEI	GCGC	1 cut(s)	695
AspS9I	GGNCC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	723
BbvI	GCAGC	2 cut(s)	371, 719
BccI	CCATC	3 cut(s)	114, 173, 312
BceAI	ACGGC	2 cut(s)	172, 214
BciT130I	CCWGG	1 cut(s)	642
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	54, 209
BfoI	RGCGCY	1 cut(s)	696
BisI	GCNGC	5 cut(s)	74, 353, 385, 501, 708
BlsI	GCNGC	5 cut(s)	75, 354, 386, 502, 709
Bme1390I	CCNGG	2 cut(s)	161, 642
BmeRI	GACNNNNNGTC	1 cut(s)	616
BmeT110I	CYCGRG	1 cut(s)	477
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	2 cut(s)	161, 642
BpiI	GAAGAC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	129, 429
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 83, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 375
Bse1I	ACTGG	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	642
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	129, 429
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	45, 375
BseMII	CTCAG	2 cut(s)	346, 680
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	2 cut(s)	305, 495
BseXI	GCAGC	2 cut(s)	371, 719
Bsh1236I	CGCG	1 cut(s)	229
BshFI	GGCC	2 cut(s)	159, 164
BshNI	GGYRCC	1 cut(s)	497
BshVI	ATCGAT	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	477
BsiSI	CCGG	3 cut(s)	161, 242, 392
BslI	CCNNNNNNNGG	2 cut(s)	45, 375
BsmAI	GTCTC	2 cut(s)	54, 209
BsnI	GGCC	2 cut(s)	159, 164
Bso31I	GGTCTC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	477
Bsp1407I	TGTACA	1 cut(s)	740
Bsp143I	GATC	1 cut(s)	543
BspACI	CCGC	8 cut(s)	74, 103, 112, 229, 284, 353, 404, 501
BspANI	GGCC	2 cut(s)	159, 164
BspCNI	CTCAG	2 cut(s)	345, 679
BspDI	ATCGAT	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	499
BspT107I	GGYRCC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	740
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	2 cut(s)	129, 429
BssMI	GATC	1 cut(s)	543
BssT1I	CCWWGG	2 cut(s)	129, 429
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	1 cut(s)	417
BstAUI	TGTACA	1 cut(s)	740
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	2 cut(s)	332, 666
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	1 cut(s)	546
BstMAI	GTCTC	2 cut(s)	54, 209
BstMBI	GATC	1 cut(s)	543
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	642
BstSCI	CCNGG	2 cut(s)	159, 640
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	371, 719
BstV2I	GAAGAC	1 cut(s)	723
Bsu15I	ATCGAT	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	159, 164
BsuTUI	ATCGAT	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	389
CfoI	GCGC	1 cut(s)	695
Cfr13I	GGNCC	1 cut(s)	158
ClaI	ATCGAT	1 cut(s)	168
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	741
CviAII	CATG	3 cut(s)	635, 680, 686
CviQI	GTAC	1 cut(s)	741
DdeI	CTNAG	2 cut(s)	332, 666
DpnI	GATC	1 cut(s)	545
DpnII	GATC	1 cut(s)	543
DriI	GACNNNNNGTC	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	162
Eam1105I	GACNNNNNGTC	1 cut(s)	616
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	129, 429
Eco31I	GGTCTC	1 cut(s)	54
Eco32I	GATATC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	477
EcoRI	GAATTC	2 cut(s)	327, 552
EcoRII	CCWGG	1 cut(s)	640
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	129, 429
ErhI	CCWWGG	2 cut(s)	129, 429
FaeI	CATG	3 cut(s)	638, 683, 689
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FatI	CATG	3 cut(s)	634, 679, 685
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	5 cut(s)	74, 353, 385, 501, 708
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	5 cut(s)	74, 353, 385, 501, 708
GlaI	GCGC	1 cut(s)	694
GluI	GCNGC	5 cut(s)	74, 353, 385, 501, 708
HaeII	RGCGCY	1 cut(s)	696
HaeIII	GGCC	2 cut(s)	159, 164
HapII	CCGG	3 cut(s)	161, 242, 392
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	695
Hin1II	CATG	3 cut(s)	638, 683, 689
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HinfI	GANTC	7 cut(s)	150, 238, 395, 492, 566, 617, 728
HpaII	CCGG	3 cut(s)	161, 242, 392
Hpy188I	TCNGA	3 cut(s)	447, 491, 669
Hpy188III	TCNNGA	1 cut(s)	214
Hpy99I	CGWCG	3 cut(s)	158, 197, 200
HpyAV	CCTTC	3 cut(s)	37, 321, 528
HpyCH4III	ACNGT	1 cut(s)	417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	2 cut(s)	332, 666
Hsp92II	CATG	3 cut(s)	638, 683, 689
HspAI	GCGC	1 cut(s)	693
Kzo9I	GATC	1 cut(s)	543
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	9 cut(s)	174, 255, 319, 326, 361, 401, 405, 627, 654
Lsp1109I	GCAGC	2 cut(s)	371, 719
MaeIII	GTNAC	2 cut(s)	181, 675
MalI	GATC	1 cut(s)	545
MboI	GATC	1 cut(s)	543
MboII	GAAGA	6 cut(s)	513, 522, 525, 528, 531, 723
MluCI	AATT	5 cut(s)	327, 504, 526, 552, 604
MlyI	GAGTC	4 cut(s)	232, 404, 626, 737
MmeI	TCCRAC	2 cut(s)	63, 701
MroXI	GAANNNNTTC	1 cut(s)	756
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	684
MspI	CCGG	3 cut(s)	161, 242, 392
MspR9I	CCNGG	2 cut(s)	161, 642
MvaI	CCWGG	1 cut(s)	642
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	1 cut(s)	543
NlaIII	CATG	3 cut(s)	638, 683, 689
NlaIV	GGNNCC	1 cut(s)	499
NmeAIII	GCCGAG	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	181
PaeR7I	CTCGAG	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	3 cut(s)	150, 492, 566
PkrI	GCNGC	5 cut(s)	75, 354, 386, 502, 709
PleI	GAGTC	4 cut(s)	232, 403, 625, 736
PpsI	GAGTC	4 cut(s)	232, 403, 625, 736
PshBI	ATTAAT	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	1 cut(s)	158
PspXI	VCTCGAGB	1 cut(s)	477
RsaI	GTAC	1 cut(s)	742
RsaNI	GTAC	1 cut(s)	741
RseI	CAYNNNNRTG	1 cut(s)	684
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	5 cut(s)	74, 353, 385, 501, 708
Sau3AI	GATC	1 cut(s)	543
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	4 cut(s)	232, 404, 626, 737
ScrFI	CCNGG	2 cut(s)	161, 642
Sfr274I	CTCGAG	1 cut(s)	477
SlaI	CTCGAG	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	2 cut(s)	266, 477
SmoI	CTYRAG	2 cut(s)	266, 477
Sse9I	AATT	5 cut(s)	327, 504, 526, 552, 604
SsiI	CCGC	8 cut(s)	74, 103, 112, 229, 284, 353, 404, 501
StyD4I	CCNGG	2 cut(s)	159, 640
StyI	CCWWGG	2 cut(s)	129, 429
TaaI	ACNGT	1 cut(s)	417
TaqI	TCGA	6 cut(s)	139, 153, 168, 213, 478, 542
TasI	AATT	5 cut(s)	327, 504, 526, 552, 604
TatI	WGTACW	1 cut(s)	740
TauI	GCSGC	3 cut(s)	76, 355, 503
TfiI	GAWTC	3 cut(s)	150, 492, 566
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	384, 707
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	4 cut(s)	486, 579, 636, 644
TspRI	CASTG	1 cut(s)	420
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	2 cut(s)	327, 552
XhoI	CTCGAG	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.